INFO  : Successfully started log file 'model.loop_uber.log'
________________________________________________________________________________

                                     Assembler

                 Protein structure prediction by fragment assembly
                                   (Ver. 0.6.6)
________________________________________________________________________________

INFO  : Printing configuration for program 'assembler'
INFO  : Configuration file '//bmm/www/servers/phyre2/bin/loop_uber_local.config'
________________________________________________________________________________

[Query Input]
FASTA_FILE                               = /bmm/www/servers/phyre2/public_html/phyre2_output/1df4f8c6c13e8619/input.fasta
PSSM_FILE                                = /bmm/www/servers/phyre2/public_html/phyre2_output/1df4f8c6c13e8619/assembler.pssm
MODEL_START_LIST                         = model_start.list
BUILD_INITIAL_REFERENCE                  = 0
BUILD_UP_MAX_MODELS                      = 1
________________________________________________________________________________

[Energy Functions]
PP_STUB                                  = /bmm/www/servers/phyre2/bin/assembler_data/default.pp
SP_STUB                                  = /bmm/www/servers/phyre2/bin/assembler_data/default.sp
BBDEP_LIBRARY_THRESHOLD                  = 0.9
RADIUS_OF_GYRATION_THRESHOLD             = 2
RADIUS_OF_GYRATION_ABSOLUTE              = 0
CBCB_CONTACT_DIST                        = 7.5
CONTACT_GAP                              = 5
MAXSUB_DIST                              = 6
MAXSUB_ITER                              = 1
RMSD_DIST                                = 6
HBOND_SEPARATION                         = 5
RESIDUE_PROB_CUT_OFF                     = 0.2
PP_RESIDUE_PROB_CUT_OFF                  = 0.4
MAX_CALIBRATE_ENERGY                     = 500
CUTOFF_PHI_PSI                           = 0.001
TORSION_BILINEAR                         = 1
LJ_SWITCH_RATIO                          = 0.7
ENERGY_SET_MODE                          = 0
NUMBER_OF_ENERGY_SETS                    = 1
________________________________________________________________________________

[Energy Set 1]
T_LIMIT                                  = 0
WEIGHT_PAIR_POTENTIAL                    = 0.215
WEIGHT_SOLVATION_POTENTIAL               = 1
WEIGHT_STERIC_ENERGY                     = 5.03
WEIGHT_RADIUS_OF_GYRATION                = 2.83
WEIGHT_TORSION_ENERGY                    = 1.14
WEIGHT_HBONDS_ORIENT                     = 5.27
STERIC_CLASH                             = 1
PAIR_SEPARATION_MIN                      = 3
SS_METHOD                                = 0
ENERGY_SCALE_FACTOR                      = 0
PROB_REFINE_HELIX                        = 0.3
PROB_REFINE_SHEET                        = 0.5
PROB_REFINE_COIL                         = 1
PROB_SHEAR_STRAND                        = 0.05
PROB_PHI_PSI_TWIST                       = 0.1
PROB_PHI_PSI_TILT                        = 0.15
PROB_TEMPLATE_SPLICE                     = 0
PROB_FRAG_3                              = 1
PROB_GUNN_COST_9                         = 0
PROB_GUNN_COST_3                         = 0
PROB_STABILISE_TWIST                     = 0
PROB_STABILISE_TILT                      = 0
PROB_STABILISE_TEMPLATE                  = 0
PROB_STABILISE_FRAG_9                    = 0
PROB_STABILISE_FRAG_3                    = 0
PROB_STABILISE_GUNN_9                    = 0
PROB_STABILISE_GUNN_3                    = 0
FULL_ATOM_MODEL                          = 0
________________________________________________________________________________

[Model Building]
MAX_MODELS                               = 1000
MAX_BUILD_ITERATIONS                     = 100
MAX_JOIN_ITERATIONS                      = 5
MAX_JOIN_REFINE_ITERATIONS               = 5
MAX_REFINE_ITERATIONS                    = 5
MAX_SPLICE_ITERATIONS                    = 5
SHEAR_STRAND_DISTANCE                    = 3.8
PHI_PSI_TWIST_LENGTH                     = 3
PHI_PSI_TWIST_RANGE                      = 5
PHI_PSI_TILT_LENGTH                      = 5
PHI_PSI_TILT_RANGE                       = 15
STABILISE_SIZE                           = 5
STABILISE_RESTRICT                       = 1
STABILISE_ITERATIONS                     = 3
STABILISE_BREAK_THRESHOLD                = 1
STABILISE_HELIX                          = 0
STABILISE_STRAND                         = 1
STABILISE_MAX_ANGLE_UPDATE               = 15
SHEAR_LOOP_SIZE                          = 8
SHEAR_LOOP_COIL_SIZE                     = 5
SHEAR_MAX_CCD_ITERATIONS                 = 300
SHEAR_CCD_THRESHOLD                      = 0.3
SHEAR_CCD_NC_THRESHOLD                   = 0.1
SHEAR_CCD_RESTRICT                       = 0
SHEAR_MAX_ANGLE_UPDATE                   = 15
REPACK_FREQUENCY                         = 25
REPACK_RANDOM                            = 2
REPACK_THRESHOLD                         = 0.7
GUNN_COST_UPPER                          = 0.03
GUNN_COST_LOWER                          = 11.4701
MAX_MSD_DEVIATION                        = 16
RESEED_RESTRICTION_INTERVAL              = 0
RANDOM_LIST_L                            = 0
RANDOM_LIST_9                            = 0
RANDOM_LIST_3                            = 0
RANDOM_LIST_TEMPLATE                     = 0
RANDOM_BUILD                             = 0
________________________________________________________________________________

[Simulated Annealing]
T_START_TEMP                             = 10
T_END_TEMP                               = 0
CALIBRATION_SEED                         = 0
T_CALIBRATION_FACTOR                     = 10
ENERGY_CALIBRATION_FACTOR                = 4
MAX_CALIBRATE_START                      = 500
T_CALIBRATION_FACTOR                     = 10
T_REDUCE_FACTOR_EXP                      = 0.5
T_REDUCE_FACTOR_STEPS                    = 50
RATIO_EXP_TO_LINEAR_SWITCH               = 1
MIN_TEMP_THRESHOLD                       = 0
MAX_TEMP_ITER                            = 1000
MAX_TEMP_REFINE                          = 100
MAX_STOP_ITER                            = 30000
MAX_STOP_REFINE                          = 2000
DELTA_ROLL_SIZE                          = 0
DELTA_STOP_THRESHOLD                     = 0
MAX_QUENCH                               = 5000
NO_TEMPLATE_RATIO                        = 0.2
________________________________________________________________________________

[Loop Modelling]
MODEL_LOOPS                              = 1
LOOP_DATABASE                            = /data/data/blast/loopdb
MIN_LOOP_SIZE                            = 2
MAX_LOOP_SIZE                            = 15
POSITIONAL_GAPS                          = 1
TRIM_BACK                                = 1
TRIM_BACK_STERIC_CHECKS                  = 1
MAX_TRIM_RES                             = 5
MAX_TRIM_EDGE                            = 3
TRIM_BACK_GOODNESS                       = 1
SIZE_TRIM_BACK_AV                        = 0
MAX_SELECT_LOOPS                         = 500
TOLERANCE                                = 0.75
RMSD_WEIGHT                              = 80.5
RMSD_BENCHMARK                           = 0
FIT_ON_TRIANGLE                          = 0
CHECK_STERIC_CLASH                       = 1
CHECK_STERIC_ENERGY                      = 0
STERIC_ENERGY_THRESHOLD                  = 0.5
ABINITIO_LOOPS                           = 0
ABINITIO_ENDS                            = 0
ABINITIO_TRIM_COUNT                      = 0
MAX_LOOP_MODELS                          = 1000
CCD_LOOP_CLOSURE_TOLERANCE               = 6
CCD_FAILURE_TOLERANCE                    = 0
LOOP_SELECTION_TOLERANCE                 = 9
MAX_CCD_LOOPS                            = 20
CCD_DIRECTION                            = 1
CCD_CLOSURE_RMSD                         = 0.08
CCD_CLOSURE_NC_DEVIATION                 = 0.1
CCD_MAX_ITER                             = 5000
CCD_RESTRICT                             = 1
CCD_MAX_ANGLE_UPDATE                     = 15
MAX_COMBINE_LOOPS                        = 10
START_T                                  = 2
STEPS_PER_LOOP                           = 100
REPLACE_TRIMMED                          = 1
________________________________________________________________________________

[Logging]
LOG_LEVEL                                = 1
LOG_TIME                                 = 0
LOG_FILE                                 = 0
LOG_FILE_NAME                            = model.loop_uber.log
FOLDING_PATH                             = 0
OUTPUT_DIR                               = loop
USE_COMPRESSION                          = 0
FIT_ON_PREVIOUS                          = 0
USAGE_FILE                               = assembler.model_usage
MODEL_START_NO                           = 1
MODEL_END_NO                             = 0
OUTPUT_FREQUENCY                         = 100
UNWEIGHTED_OUTPUT                        = 0
SPLICE_INFO                              = 1
SPLICE_FILE                              = assembler.splice_info
FRAGVAR_INFO                             = 0
BAD_FRAG_DIR                             = assembler_bad
REFINE_RRG_LIMIT                         = 0
STOP_FILE                                = assembler.stop
OUTPUT_LOOPS                             = 0
________________________________________________________________________________

[Benchmark]
BACKBONE_RMSD                            = 0
OUTPUT_RMSD                              = 0
OUTPUT_MAXSUB                            = 0
MAXSUB_DIST                              = 6
MAXSUB_ITER                              = 0
________________________________________________________________________________

INFO  : Reading FASTA sequence file
INFO  : Reading query PSSM file
INFO  : Reading Pair-potential file
INFO  : Reading Solvation-potential file
INFO  : Reading PDB list file 'model_start.list'
INFO  : Successfully read 0 PDBs
INFO  : Successfully read 1 / 1 PDBs from list file 'model_start.list'
________________________________________________________________________________

INFO  : Entering build loops routine
________________________________________________________________________________

INFO  : Processing starting model 1 - hh.d1svia_.model.1.pdb
________________________________________________________________________________

INFO  : Performing trim back
INFO  : Chain break between residues 49 - 50
INFO  : Trim Back   49 -   50 : Calculating loop extraction success
INFO  : Trim Back   49 -   50 : Extraction identifed 0 loops
INFO  : Trim Back   49 -   51 : Calculating loop extraction success
INFO  : Trim Back   49 -   51 : Extraction identifed 0 loops
INFO  : Trim Back   49 -   52 : Calculating loop extraction success
INFO  : Trim Back   49 -   52 : Extraction identifed 0 loops
INFO  : Trim Back   49 -   53 : Calculating loop extraction success
INFO  : Trim Back   49 -   53 : Extraction identifed 0 loops
INFO  : Trim Back   48 -   50 : Calculating loop extraction success
INFO  : Trim Back   48 -   50 : Extraction identifed 0 loops
INFO  : Trim Back   48 -   51 : Calculating loop extraction success
INFO  : Trim Back   48 -   51 : Extraction identifed 0 loops
INFO  : Trim Back   48 -   52 : Calculating loop extraction success
INFO  : Trim Back   48 -   52 : Extraction identifed 0 loops
INFO  : Trim Back   48 -   53 : Calculating loop extraction success
INFO  : Trim Back   48 -   53 : Extraction identifed 0 loops
INFO  : Trim Back   47 -   50 : Calculating loop extraction success
INFO  : Trim Back   47 -   50 : Extraction identifed 0 loops
INFO  : Trim Back   47 -   51 : Calculating loop extraction success
INFO  : Trim Back   47 -   51 : Extraction identifed 0 loops
INFO  : Trim Back   47 -   52 : Calculating loop extraction success
INFO  : Trim Back   47 -   52 : Extraction identifed 0 loops
INFO  : Trim Back   47 -   53 : Calculating loop extraction success
INFO  : Trim Back   47 -   53 : Extraction identifed 0 loops
INFO  : Trim Back   46 -   50 : Calculating loop extraction success
INFO  : Trim Back   46 -   50 : Extraction identifed 0 loops
INFO  : Trim Back   46 -   51 : Calculating loop extraction success
INFO  : Trim Back   46 -   51 : Extraction identifed 0 loops
INFO  : Trim Back   46 -   52 : Calculating loop extraction success
INFO  : Trim Back   46 -   52 : Extraction identifed 0 loops
INFO  : Trim back to residues 46 - 50
WARN  : Positional gap in chain between position 53 and 67
INFO  : Chain break between residues 53 - 67
INFO  : Trim Back   53 -   67 : Calculating loop extraction success
INFO  : Trim Back   53 -   67 : Extraction identifed 0 loops
INFO  : Trim Back   53 -   68 : Calculating loop extraction success
ERROR : Trim Back failed to transform database loops to fit model
INFO  : Trim Back   53 -   68 : Extraction identifed 0 loops
INFO  : Trim Back   52 -   67 : Calculating loop extraction success
ERROR : Trim Back failed to transform database loops to fit model
INFO  : Trim Back   52 -   67 : Extraction identifed 0 loops
INFO  : Trim back to residues 52 - 67
________________________________________________________________________________

INFO  : Modelling loops
________________________________________________________________________________

INFO  : Gap size 4 between position 46 and 50 : Seq = 'LTNQK'
INFO  : Stem parameters: x = -4.99; y = 21.77; beta = 2.32; gamma = -1.77
INFO  : Identified 0 potential loops
ERROR : Failed to identify any loops within database
________________________________________________________________________________

INFO  : Gap size 15 between position 52 and 67 : Seq = 'LARTSKTPGRTQLINL'
INFO  : Stem parameters: x = 3.58; y = 1.82; beta = 2.51; gamma = 0.44
INFO  : Searching loop database file '/data/data/blast/loopdb/3/2/size.15.b'
INFO  : Searching loop database file '/data/data/blast/loopdb/3/3/size.15.b'
INFO  : Searching loop database file '/data/data/blast/loopdb/4/2/size.15.b'
INFO  : Searching loop database file '/data/data/blast/loopdb/4/3/size.15.b'
INFO  : Identified 108 potential loops
INFO  : Ranking by goodness
INFO  : Extracting 1 / 108 from database
INFO  : Extracting 21 / 108 from database
INFO  : Extracting 41 / 108 from database
INFO  : Extracting 61 / 108 from database
INFO  : Extracting 81 / 108 from database
INFO  : Extracting 101 / 108 from database
INFO  : Ranking by loop score
INFO  : Rank   Score    = Seq     - 80.50 *    rms^2 (goodness) : Target seq = LARTSKTPGRTQLINL
INFO  :    1     -9.251 =   1.000 - 80.50 *  0.357^2 ( 2.965) : AQFWTSYNGVTVSVGN : Loop ID =   43 : 8PRN_.pdb.bin (  68 -   83)
INFO  :    2    -10.093 =   1.000 - 80.50 *  0.371^2 ( 2.785) : AQFWTSYNGVTVSVGN : Loop ID =   53 : 3PRN_.pdb.bin (  68 -   83)
INFO  :    3    -10.171 =   1.000 - 80.50 *  0.373^2 ( 2.575) : AQFWTSYNGVTVSVGN : Loop ID =   70 : 1BH3_.pdb.bin (  68 -   83)
INFO  :    4    -10.546 =   1.000 - 80.50 *  0.379^2 ( 2.743) : AQFWTSYNGVTVSVGN : Loop ID =   63 : 6PRN_.pdb.bin (  68 -   83)
INFO  :    5    -10.763 =   1.000 - 80.50 *  0.382^2 ( 2.584) : AQFWTSYNGVTVSVGN : Loop ID =   21 : 7PRN_.pdb.bin (  68 -   83)
INFO  :    6    -10.822 =   1.000 - 80.50 *  0.383^2 ( 2.783) : AQFWTSYNGVTVSVGN : Loop ID =   58 : 5PRN_.pdb.bin (  68 -   83)
INFO  :    7    -14.040 =  -1.000 - 80.50 *  0.402^2 ( 7.908) : YEQVYSYGGAQNRGCA : Loop ID =   51 : 1XWTA.pdb.bin ( 324 -  339)
INFO  :    8    -14.259 =  -1.000 - 80.50 *  0.406^2 ( 7.842) : YEQVYSYGGAQNRGCA : Loop ID =   38 : 1H14A.pdb.bin ( 324 -  339)
INFO  :    9    -15.080 =  -1.000 - 80.50 *  0.418^2 ( 8.054) : YEQVYSYGGAQNRGCA : Loop ID =   18 : 1H12A.pdb.bin ( 324 -  339)
INFO  :   10    -15.519 =  -7.000 - 80.50 *  0.325^2 ( 6.401) : TIIASGYRSALPHGVA : Loop ID =   13 : 1WY2A.pdb.bin ( 182 -  197)
INFO  :   11    -16.794 =  -6.000 - 80.50 *  0.366^2 ( 4.435) : RLVEFKIGTTEVIPGL : Loop ID =   65 : 1DPE_.pdb.bin (  34 -   49)
INFO  :   12    -17.186 =  -6.000 - 80.50 *  0.373^2 ( 7.774) : KEGYLQIGATTQAAQK : Loop ID =   74 : 1K4YA.pdb.bin ( 466 -  481)
INFO  :   13    -20.461 = -12.000 - 80.50 *  0.324^2 ( 6.316) : TIIASGHRSALPHGVA : Loop ID =   14 : 1PV9A.pdb.bin ( 171 -  186)
INFO  :   14    -23.158 = -14.000 - 80.50 *  0.337^2 ( 7.345) : PSVYCQSQACTSHSRF : Loop ID =    4 : 1HTRB.pdb.bin (  40 -   55)
INFO  :   15    -24.278 = -10.000 - 80.50 *  0.421^2 ( 7.862) : PSVYCSSLACTNHNRF : Loop ID =   15 : 1QRPE.pdb.bin (  40 -   55)
INFO  :   16    -25.246 = -15.000 - 80.50 *  0.357^2 ( 7.855) : IGYSFTVGGSEILFEV : Loop ID =   10 : 1B09A.pdb.bin (  70 -   85)
INFO  :   17    -25.507 =  -4.000 - 80.50 *  0.517^2 ( 5.865) : GGWSQVYKGLTLVSVR : Loop ID =   23 : 1WHSB.pdb.bin ( 107 -  122)
INFO  :   18    -25.851 = -16.000 - 80.50 *  0.350^2 ( 7.230) : FSSETTASEVDGQTIY : Loop ID =   28 : 1OD1A.pdb.bin (  43 -   58)
INFO  :   19    -26.520 = -15.000 - 80.50 *  0.378^2 ( 6.574) : TYAAFQVGDEALILEE : Loop ID =    2 : 1ILE_.pdb.bin ( 246 -  261)
INFO  :   20    -27.391 = -11.000 - 80.50 *  0.451^2 (10.798) : DAIILESNGHFAMVDT : Loop ID =  107 : 2BIBA.pdb.bin (  18 -   33)
INFO  :   21    -29.118 = -22.000 - 80.50 *  0.297^2 ( 5.961) : NVFPSTTKPESTPFSS : Loop ID =   62 : 1LL7A.pdb.bin ( 218 -  233)
INFO  :   22    -29.641 = -22.000 - 80.50 *  0.308^2 ( 6.204) : NVFPSTTKPESTPFSS : Loop ID =   69 : 1D2KA.pdb.bin ( 218 -  233)
INFO  :   23    -30.580 = -14.000 - 80.50 *  0.454^2 ( 6.568) : GGWSVQYEGLTYVTVR : Loop ID =   66 : 1GXSB.pdb.bin ( 112 -  127)
INFO  :   24    -31.081 = -19.000 - 80.50 *  0.387^2 ( 7.073) : PSIYCKSNACKNHQRF : Loop ID =   42 : 4CMS_.pdb.bin (  42 -   57)
INFO  :   25    -31.350 = -23.000 - 80.50 *  0.322^2 ( 6.590) : NVYNDTSNPLSTPFNT : Loop ID =    9 : 1W9PA.pdb.bin ( 221 -  236)
INFO  :   26    -31.928 = -24.000 - 80.50 *  0.314^2 ( 4.696) : KGRVYEKDYALYIYLF : Loop ID =   55 : 1LUZA.pdb.bin (  12 -   27)
INFO  :   27    -31.944 = -21.000 - 80.50 *  0.369^2 ( 7.261) : PSVYCSSLACSDHNQF : Loop ID =   41 : 1F34A.pdb.bin (  40 -   55)
INFO  :   28    -32.068 = -19.000 - 80.50 *  0.403^2 ( 3.681) : QGECLETIGNYTCSCY : Loop ID =   54 : 1G1SA.pdb.bin ( 129 -  144)
INFO  :   29    -32.192 = -21.000 - 80.50 *  0.373^2 ( 6.813) : PSVYCSSLACSDHNQF : Loop ID =   40 : 5PEP_.pdb.bin (  40 -   55)
INFO  :   30    -32.681 = -22.000 - 80.50 *  0.364^2 ( 8.059) : FSSQTPSSERSGHDYY : Loop ID =   20 : 1IZDA.pdb.bin (  41 -   56)
INFO  :   31    -32.770 = -23.000 - 80.50 *  0.348^2 ( 7.519) : NVYNDTSNPLSTPFNT : Loop ID =   68 : 1WNOA.pdb.bin ( 221 -  236)
INFO  :   32    -34.887 = -23.000 - 80.50 *  0.384^2 ( 4.538) : AIASVDASSGQVTLKE : Loop ID =   83 : 1F00I.pdb.bin ( 143 -  158)
INFO  :   33    -35.280 = -30.000 - 80.50 *  0.256^2 ( 4.174) : GGIESYNDPYQVRDCQ : Loop ID =   82 : 1BVNP.pdb.bin ( 145 -  160)
INFO  :   34    -36.636 = -15.000 - 80.50 *  0.518^2 (11.309) : SCAPGADPKSRLCALC : Loop ID =   98 : 2B6DA.pdb.bin ( 148 -  163)
INFO  :   35    -36.832 = -27.000 - 80.50 *  0.349^2 ( 8.491) : HGLLVKKNHEYEINHV : Loop ID =   39 : 1E4EB.pdb.bin (  74 -   89)
INFO  :   36    -37.331 = -28.000 - 80.50 *  0.340^2 ( 6.069) : GDIENYNDATQVRDCR : Loop ID =   79 : 1HNY_.pdb.bin ( 144 -  159)
INFO  :   37    -37.343 = -28.000 - 80.50 *  0.341^2 ( 6.483) : GDIENYNDATQVRDCR : Loop ID =   31 : 1Q4NX.pdb.bin ( 144 -  159)
INFO  :   38    -37.435 = -28.000 - 80.50 *  0.342^2 ( 6.864) : GDIENYNDATQVRDCR : Loop ID =    8 : 1SMD_.pdb.bin ( 144 -  159)
INFO  :   39    -37.442 = -28.000 - 80.50 *  0.342^2 ( 6.054) : GDIENYNDATQVRDCR : Loop ID =   88 : 1KGUA.pdb.bin ( 144 -  159)
INFO  :   40    -37.698 = -28.000 - 80.50 *  0.347^2 ( 6.619) : GDIENYNDATQVRDCR : Loop ID =   90 : 1KBBA.pdb.bin ( 144 -  159)
INFO  :   41    -38.050 = -28.000 - 80.50 *  0.353^2 ( 6.875) : GDIENYNDATQVRDCR : Loop ID =   36 : 1NM9A.pdb.bin ( 144 -  159)
INFO  :   42    -38.136 = -28.000 - 80.50 *  0.355^2 ( 7.057) : GDIENYNDATQVRDCR : Loop ID =   89 : 2CPUA.pdb.bin ( 144 -  159)
INFO  :   43    -38.178 = -22.000 - 80.50 *  0.448^2 ( 1.638) : LGRIHADFNHVWFTGF : Loop ID =   46 : 1W18A.pdb.bin ( 204 -  219)
INFO  :   44    -38.186 = -28.000 - 80.50 *  0.356^2 ( 6.994) : GDIENYNDATQVRDCR : Loop ID =   99 : 1XGZA.pdb.bin ( 144 -  159)
INFO  :   45    -38.210 = -28.000 - 80.50 *  0.356^2 ( 7.124) : GDIENYNDATQVRDCR : Loop ID =   27 : 1KBKA.pdb.bin ( 144 -  159)
INFO  :   46    -38.228 = -28.000 - 80.50 *  0.356^2 ( 6.359) : GDIENYNDATQVRDCR : Loop ID =   35 : 1JXJA.pdb.bin ( 144 -  159)
INFO  :   47    -38.231 = -28.000 - 80.50 *  0.356^2 ( 6.271) : GDIENYNDATQVRDCR : Loop ID =   91 : 1KGWA.pdb.bin ( 144 -  159)
INFO  :   48    -38.264 = -30.000 - 80.50 *  0.320^2 ( 5.331) : GGIESYNDPYQVRDCQ : Loop ID =   34 : 1VAHA.pdb.bin ( 145 -  160)
INFO  :   49    -38.723 = -28.000 - 80.50 *  0.365^2 ( 7.123) : GDIENYNDATQVRDCR : Loop ID =   30 : 1KB3A.pdb.bin ( 144 -  159)
INFO  :   50    -38.878 = -28.000 - 80.50 *  0.368^2 ( 7.135) : GDIENYNDATQVRDCR : Loop ID =   32 : 1KGXA.pdb.bin ( 144 -  159)
INFO  :   51    -38.911 = -15.000 - 80.50 *  0.545^2 (10.208) : SCAPGADPKSRLCALC : Loop ID =  104 : 1NKXA.pdb.bin ( 148 -  163)
INFO  :   52    -39.069 = -28.000 - 80.50 *  0.371^2 ( 7.084) : GDIENYNDATQVRDCR : Loop ID =   37 : 1JXKA.pdb.bin ( 144 -  159)
INFO  :   53    -39.204 = -30.000 - 80.50 *  0.338^2 ( 5.869) : GGIESYNDPYQVRDCQ : Loop ID =   24 : 1HX0A.pdb.bin ( 144 -  159)
INFO  :   54    -39.278 = -27.000 - 80.50 *  0.391^2 ( 8.104) : TYGDHPGLPKVEDTIG : Loop ID =   85 : 1SB8A.pdb.bin ( 144 -  159)
INFO  :   55    -39.894 = -31.000 - 80.50 *  0.332^2 ( 4.097) : PLFLYDPLNDKFEPWL : Loop ID =   75 : 1VR5A.pdb.bin (  38 -   53)
INFO  :   56    -40.057 = -30.000 - 80.50 *  0.353^2 ( 6.068) : GGIESYNDPYQVRDCQ : Loop ID =   67 : 1JFH_.pdb.bin ( 144 -  159)
INFO  :   57    -40.061 = -27.000 - 80.50 *  0.403^2 (10.885) : HGLLVKKNHEYEINHV : Loop ID =    3 : 1E4EA.pdb.bin (  74 -   89)
INFO  :   58    -40.887 = -30.000 - 80.50 *  0.368^2 ( 6.751) : GGIESYNDPYQVRDCQ : Loop ID =    7 : 1DHKA.pdb.bin ( 144 -  159)
INFO  :   59    -40.915 = -31.000 - 80.50 *  0.351^2 ( 6.658) : GDIENMNDATQVRDCR : Loop ID =   47 : 1Z32X.pdb.bin ( 144 -  159)
INFO  :   60    -40.952 = -30.000 - 80.50 *  0.369^2 ( 7.157) : GGIESYNDPYQVRDCQ : Loop ID =   29 : 1PIG_.pdb.bin ( 144 -  159)
INFO  :   61    -41.119 = -17.000 - 80.50 *  0.547^2 (10.989) : SCAPGSDPRSNLCALC : Loop ID =   87 : 1LCF_.pdb.bin ( 491 -  506)
INFO  :   62    -41.412 = -32.000 - 80.50 *  0.342^2 ( 5.943) : PFVVLAPWHTWEGAEI : Loop ID =   25 : 1UFKA.pdb.bin (  73 -   88)
INFO  :   63    -41.584 = -30.000 - 80.50 *  0.379^2 ( 6.641) : GGIESYNDPYQVRDCQ : Loop ID =   33 : 1KXQA.pdb.bin ( 145 -  160)
INFO  :   64    -42.205 = -30.000 - 80.50 *  0.389^2 ( 6.139) : IGHIRAEGKGYRFVPV : Loop ID =   59 : 1P9EA.pdb.bin ( 272 -  287)
INFO  :   65    -42.609 = -24.000 - 80.50 *  0.481^2 (21.297) : HRRPWEEGNREDGYLL : Loop ID =   64 : 1W2FA.pdb.bin ( 239 -  254)
INFO  :   66    -43.259 = -29.000 - 80.50 *  0.421^2 ( 6.706) : RGEVVVIDENFGVRIT : Loop ID =   19 : 1O6AA.pdb.bin (  55 -   70)
INFO  :   67    -44.079 = -34.000 - 80.50 *  0.354^2 ( 5.971) : QGFEIVLNDYKWFAFF : Loop ID =   57 : 1K3BA.pdb.bin (  65 -   80)
INFO  :   68    -44.564 = -27.000 - 80.50 *  0.467^2 ( 5.437) : NAIAYPCGKSAFVRCL : Loop ID =   52 : 1PGUA.pdb.bin (  29 -   44)
INFO  :   69    -45.555 = -21.000 - 80.50 *  0.552^2 ( 9.129) : SCVPGATIEQKLCRQC : Loop ID =   93 : 1NNT_.pdb.bin ( 154 -  169)
INFO  :   70    -45.874 = -34.000 - 80.50 *  0.384^2 ( 8.734) : LAMKPWTSVVPDYYVF : Loop ID =   50 : 1VDMA.pdb.bin ( 116 -  131)
INFO  :   71    -46.115 = -36.000 - 80.50 *  0.354^2 ( 4.531) : YGYHHQNEQGSGYAAD : Loop ID =   17 : 1RVXB.pdb.bin (  21 -   36)
INFO  :   72    -46.780 = -28.000 - 80.50 *  0.483^2 ( 2.578) : DTQAIVQNNDSTEYGL : Loop ID =   97 : 1FKVA.pdb.bin (  37 -   52)
INFO  :   73    -47.611 = -32.000 - 80.50 *  0.440^2 ( 8.594) : YDANGNVVVDPNAPYA : Loop ID =   71 : 1R86A.pdb.bin ( 324 -  339)
INFO  :   74    -48.166 = -39.000 - 80.50 *  0.337^2 ( 5.017) : YKVGFGNPSGEYWLGN : Loop ID =   44 : 1Z3UA.pdb.bin (  62 -   77)
INFO  :   75    -48.178 = -35.000 - 80.50 *  0.405^2 ( 5.983) : YGYHHSNEQGSGYAAD : Loop ID =   22 : 1JSMB.pdb.bin (  21 -   36)
INFO  :   76    -48.571 = -20.000 - 80.50 *  0.596^2 ( 3.159) : DTQAIVENDESTEYGL : Loop ID =   60 : 1B9OA.pdb.bin (  36 -   51)
INFO  :   77    -49.125 =  -3.000 - 80.50 *  0.757^2 ( 9.274) : GVKTGSGPEAKYCLVF : Loop ID =  106 : 1J9MA.pdb.bin ( 205 -  220)
INFO  :   78    -49.157 = -39.000 - 80.50 *  0.355^2 ( 5.281) : YKVGFGNPSGEYWLGN : Loop ID =   49 : 1Z3SA.pdb.bin (  62 -   77)
INFO  :   79    -49.868 =  -3.000 - 80.50 *  0.763^2 ( 8.679) : GVKTGSGPEAKYCLVF : Loop ID =   96 : 1ES3A.pdb.bin ( 208 -  223)
INFO  :   80    -50.040 = -40.000 - 80.50 *  0.353^2 ( 5.843) : KGTLSVTSSELYFEVD : Loop ID =   11 : 1T77A.pdb.bin (  18 -   33)
INFO  :   81    -51.633 =  -3.000 - 80.50 *  0.777^2 ( 9.026) : GVKTGSGPEAKYCLVF : Loop ID =   95 : 1ES4A.pdb.bin ( 205 -  220)
INFO  :   82    -52.994 = -34.000 - 80.50 *  0.486^2 ( 5.716) : PLAVYRVGDQFYATED : Loop ID =   16 : 1VCKA.pdb.bin (  25 -   40)
INFO  :   83    -53.273 = -31.000 - 80.50 *  0.526^2 ( 3.090) : DTQAIVKNSDHKEYGL : Loop ID =   80 : 1HFX_.pdb.bin (  36 -   51)
INFO  :   84    -53.836 = -33.000 - 80.50 *  0.509^2 (10.533) : DGGCMLLSKTRLDNGN : Loop ID =   81 : 1QO3C.pdb.bin (  98 -  113)
INFO  :   85    -54.206 = -42.000 - 80.50 *  0.389^2 ( 6.038) : YGFQHSNDQGVGMAAD : Loop ID =    6 : 1JSDB.pdb.bin (  21 -   36)
INFO  :   86    -54.984 =  -3.000 - 80.50 *  0.804^2 ( 5.759) : GVKTGSGPEAKYCLVF : Loop ID =   94 : 1ESIA.pdb.bin ( 208 -  223)
INFO  :   87    -56.188 = -48.000 - 80.50 *  0.319^2 ( 4.016) : AHGSWTDSIASPAENR : Loop ID =   78 : 1TF4A.pdb.bin ( 379 -  394)
INFO  :   88    -57.549 = -37.000 - 80.50 *  0.505^2 ( 5.442) : QHIWESDSNEFSVIAD : Loop ID =   61 : 1QY5A.pdb.bin ( 148 -  163)
INFO  :   89    -58.784 = -34.000 - 80.50 *  0.555^2 ( 7.786) : TQCINVTGNGFEITQA : Loop ID =  102 : 1OA4A.pdb.bin (  28 -   43)
INFO  :   90    -59.512 = -27.000 - 80.50 *  0.636^2 ( 4.689) : DAEKFWDGLSGKFIIK : Loop ID =   45 : 2D13A.pdb.bin ( 192 -  207)
INFO  :   91    -59.779 = -14.000 - 80.50 *  0.754^2 ( 6.209) : LSFIVFSSQATIILPL : Loop ID =   73 : 1SHUX.pdb.bin (  42 -   57)
INFO  :   92    -59.820 = -44.000 - 80.50 *  0.443^2 ( 4.099) : YYLPKVAGKGLTVHPF : Loop ID =    1 : 1WKCA.pdb.bin (  62 -   77)
INFO  :   93    -60.290 = -40.000 - 80.50 *  0.502^2 ( 6.933) : CFVIISAFDQVYFLEA : Loop ID =    5 : 1RZNA.pdb.bin (  85 -  100)
INFO  :   94    -60.476 = -40.000 - 80.50 *  0.504^2 ( 6.733) : CFVIISAFDQVYFLEA : Loop ID =   48 : 1ZP7A.pdb.bin (  87 -  102)
INFO  :   95    -61.075 = -46.000 - 80.50 *  0.433^2 ( 4.398) : MTNDAIVDTDGSEVFE : Loop ID =   12 : 1N8IA.pdb.bin ( 327 -  342)
INFO  :   96    -62.371 = -28.000 - 80.50 *  0.653^2 ( 6.628) : QNPFYVTPEGEARQAP : Loop ID =   86 : 1UIRA.pdb.bin ( 292 -  307)
INFO  :   97    -63.448 = -55.000 - 80.50 *  0.324^2 ( 4.730) : GDISNWDDRYEAQWKN : Loop ID =   26 : 1QHOA.pdb.bin ( 171 -  186)
INFO  :   98    -65.085 = -15.000 - 80.50 *  0.789^2 ( 7.954) : YFAPANTDANNIEGQA : Loop ID =  108 : 2F6EA.pdb.bin (  41 -   56)
INFO  :   99    -65.313 = -46.000 - 80.50 *  0.490^2 ( 9.895) : VKSGNNGYGGYGYNAG : Loop ID =   76 : 1GA6A.pdb.bin ( 327 -  342)
INFO  :  100    -67.426 = -54.000 - 80.50 *  0.408^2 ( 6.354) : PWCHVLKNRRLTWEYC : Loop ID =   56 : 1PMLA.pdb.bin (  63 -   78)
INFO  :  101    -67.897 = -19.000 - 80.50 *  0.779^2 ( 9.411) : GIKTGHTDKAGYNLVA : Loop ID =  101 : 1Z6FA.pdb.bin ( 207 -  222)
INFO  :  102    -67.961 = -19.000 - 80.50 *  0.780^2 ( 9.117) : GIKTGHTDKAGYNLVA : Loop ID =   77 : 1NZOA.pdb.bin ( 207 -  222)
INFO  :  103    -68.059 = -17.000 - 80.50 *  0.796^2 ( 7.589) : HPFADESNSLTLNWSP : Loop ID =  103 : 1SQ9A.pdb.bin ( 149 -  164)
INFO  :  104    -69.315 = -19.000 - 80.50 *  0.791^2 ( 9.305) : GIKTGHTDKAGYNLVA : Loop ID =   92 : 1NJ4A.pdb.bin ( 198 -  213)
INFO  :  105    -73.292 = -46.000 - 80.50 *  0.582^2 ( 7.661) : ELWLGVDALGLNIYEQ : Loop ID =  105 : 1EF1A.pdb.bin ( 208 -  223)
INFO  :  106    -73.961 = -26.000 - 80.50 *  0.772^2 ( 5.205) : RYRLAANGNGQWSLVG : Loop ID =   84 : 1DABA.pdb.bin ( 518 -  533)
INFO  :  107    -88.584 = -30.000 - 80.50 *  0.853^2 ( 9.796) : GLKTGSSDTANYNHTI : Loop ID =   72 : 1TVFA.pdb.bin ( 242 -  257)
INFO  :  108   -104.342 = -42.000 - 80.50 *  0.880^2 ( 8.496) : LIIRRYSSEKHYGRES : Loop ID =  100 : 1ZETA.pdb.bin ( 317 -  332)
WARN  : Steric clash between  S   14 -> A   53 = 2.399 in loop   43 - 8PRN_.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.447 in loop   53 - 3PRN_.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.404 in loop   70 - 1BH3_.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.399 in loop   63 - 6PRN_.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.401 in loop   21 - 7PRN_.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.406 in loop   58 - 5PRN_.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.916 in loop   51 - 1XWTA.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.861 in loop   38 - 1H14A.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.941 in loop   18 - 1H12A.pdb.bin
WARN  : Steric clash between  H   10 -> P   59 = 3.121 in loop   13 - 1WY2A.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.754 in loop   65 - 1DPE_.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.661 in loop   74 - 1K4YA.pdb.bin
WARN  : Steric clash between  H   10 -> P   59 = 2.968 in loop   14 - 1PV9A.pdb.bin
WARN  : Steric clash between  M   13 -> R   54 = 1.726 in loop    4 - 1HTRB.pdb.bin
WARN  : Steric clash between  M   13 -> R   54 = 1.756 in loop   15 - 1QRPE.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.704 in loop   10 - 1B09A.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.825 in loop   23 - 1WHSB.pdb.bin
WARN  : Steric clash between  M   13 -> R   54 = 1.877 in loop   28 - 1OD1A.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.750 in loop    2 - 1ILE_.pdb.bin
WARN  : Steric clash between  V   12 -> L   64 = 2.864 in loop  107 - 2BIBA.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 3.108 in loop   62 - 1LL7A.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 3.054 in loop   69 - 1D2KA.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.607 in loop   66 - 1GXSB.pdb.bin
WARN  : Steric clash between  M   13 -> R   54 = 1.564 in loop   42 - 4CMS_.pdb.bin
WARN  : Steric clash between  S   14 -> R   54 = 0.431 in loop    9 - 1W9PA.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.887 in loop   55 - 1LUZA.pdb.bin
WARN  : Steric clash between  M   13 -> R   54 = 2.050 in loop   41 - 1F34A.pdb.bin
WARN  : Steric clash between  M   13 -> R   54 = 2.066 in loop   40 - 5PEP_.pdb.bin
WARN  : Steric clash between  M   13 -> R   54 = 1.826 in loop   20 - 1IZDA.pdb.bin
WARN  : Steric clash between  S   14 -> R   54 = 0.375 in loop   68 - 1WNOA.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.934 in loop   83 - 1F00I.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.185 in loop   82 - 1BVNP.pdb.bin
WARN  : Steric clash between  M   13 -> L   64 = 2.857 in loop   98 - 2B6DA.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.872 in loop   39 - 1E4EB.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.454 in loop   79 - 1HNY_.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.858 in loop   31 - 1Q4NX.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.585 in loop    8 - 1SMD_.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.355 in loop   88 - 1KGUA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.467 in loop   90 - 1KBBA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.747 in loop   36 - 1NM9A.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.654 in loop   89 - 2CPUA.pdb.bin
WARN  : Steric clash between  M   13 -> L   64 = 2.900 in loop   46 - 1W18A.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.649 in loop   99 - 1XGZA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.576 in loop   27 - 1KBKA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.863 in loop   35 - 1JXJA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.508 in loop   91 - 1KGWA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.638 in loop   34 - 1VAHA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.535 in loop   30 - 1KB3A.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.604 in loop   32 - 1KGXA.pdb.bin
WARN  : Steric clash between  M   13 -> L   64 = 2.618 in loop  104 - 1NKXA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.724 in loop   37 - 1JXKA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.632 in loop   24 - 1HX0A.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.754 in loop   85 - 1SB8A.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 3.062 in loop   75 - 1VR5A.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.581 in loop   67 - 1JFH_.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.933 in loop    3 - 1E4EA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.575 in loop    7 - 1DHKA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.913 in loop   47 - 1Z32X.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.638 in loop   29 - 1PIG_.pdb.bin
WARN  : Steric clash between  M   13 -> L   64 = 2.764 in loop   87 - 1LCF_.pdb.bin
WARN  : Steric clash between  M   13 -> R   54 = 1.807 in loop   25 - 1UFKA.pdb.bin
WARN  : Steric clash between  F   11 -> L   64 = 2.410 in loop   33 - 1KXQA.pdb.bin
WARN  : Steric clash between  M   13 -> I   65 = 3.001 in loop   64 - 1W2FA.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.675 in loop   19 - 1O6AA.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.899 in loop   57 - 1K3BA.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 2.905 in loop   52 - 1PGUA.pdb.bin
WARN  : Steric clash between  M   13 -> L   64 = 2.488 in loop   93 - 1NNT_.pdb.bin
WARN  : Steric clash between  S   14 -> I   65 = 2.625 in loop   50 - 1VDMA.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.947 in loop   17 - 1RVXB.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.136 in loop   97 - 1FKVA.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.737 in loop   71 - 1R86A.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.992 in loop   44 - 1Z3UA.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.878 in loop   22 - 1JSMB.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.037 in loop   60 - 1B9OA.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 2.933 in loop  106 - 1J9MA.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.950 in loop   49 - 1Z3SA.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 2.956 in loop   96 - 1ES3A.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 3.104 in loop   11 - 1T77A.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 2.926 in loop   95 - 1ES4A.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 2.414 in loop   16 - 1VCKA.pdb.bin
WARN  : Steric clash between  S   14 -> A   53 = 2.199 in loop   80 - 1HFX_.pdb.bin
WARN  : Steric clash between  D   78 -> R   54 = 2.084 in loop   81 - 1QO3C.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 2.968 in loop    6 - 1JSDB.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 3.198 in loop   94 - 1ESIA.pdb.bin
WARN  : Steric clash between  F   11 -> Q   63 = 2.852 in loop   78 - 1TF4A.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 2.324 in loop   61 - 1QY5A.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 2.706 in loop  102 - 1OA4A.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 2.165 in loop   45 - 2D13A.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 2.725 in loop   73 - 1SHUX.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 3.192 in loop    1 - 1WKCA.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 3.088 in loop    5 - 1RZNA.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 3.086 in loop   48 - 1ZP7A.pdb.bin
WARN  : Steric clash between  M   13 -> N   66 = 3.106 in loop   12 - 1N8IA.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 3.108 in loop   86 - 1UIRA.pdb.bin
WARN  : Steric clash between  F   11 -> Q   63 = 2.529 in loop   26 - 1QHOA.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 2.609 in loop  108 - 2F6EA.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 2.013 in loop   76 - 1GA6A.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 3.156 in loop   56 - 1PMLA.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 2.902 in loop  101 - 1Z6FA.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 2.896 in loop   77 - 1NZOA.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 2.661 in loop  103 - 1SQ9A.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 2.905 in loop   92 - 1NJ4A.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 3.122 in loop  105 - 1EF1A.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 3.151 in loop   84 - 1DABA.pdb.bin
WARN  : Steric clash between  F   11 -> I   65 = 3.087 in loop   72 - 1TVFA.pdb.bin
WARN  : Steric clash between  F   11 -> N   66 = 2.595 in loop  100 - 1ZETA.pdb.bin
INFO  : Identifed 2 loops for gap 52 - 67 : 'LARTSKTPGRTQLINL'
WARN  : Model missing 3 N-terminal residues
WARN  : Model missing 11 C-terminal residues
________________________________________________________________________________

INFO  : Cyclic-Coordinate Descent (CCD) and selection for gap   52 -   67
INFO  : CCD : Closed loop   54 in    36 N->C cycles (RMSD = 0.0798639 : N-C = 1.39184)
WARN  : Steric clash between  S   14 -> N   66 = 3.085 in loop   54 - 1G1SA.pdb.bin
ERROR : CCD : Altered loop 54 fails steric checks
INFO  : CCD : Closed loop   59 in    29 N->C cycles (RMSD = 0.0797861 : N-C = 1.37747)
WARN  : Steric clash between  S   14 -> N   66 = 2.865 in loop   59 - 1P9EA.pdb.bin
ERROR : CCD : Altered loop 59 fails steric checks
ERROR : Failed to select any loops for gap 52 - 67
________________________________________________________________________________

INFO  : Assembling final models for 0 gaps => 1 combinations
INFO  : Removing single loop lists
INFO  : Assembled 1 / 1 combinations
________________________________________________________________________________

INFO  : Ranking final models by energy
INFO  : Outputting models to dir 'loop/model.1'
INFO  : model.1.pdb : Energy = -234.958 (T = 0) : I = 0 : R = 0 : RoG = 43.443 : PP = 41.632 : SP = -16.139 : SE = 0.623 : HO = -307.100 : TE = 2.583493
________________________________________________________________________________

INFO  : Model building complete
________________________________________________________________________________

