16/01/2012 19:10:36 : INFO  : Run start: Mon Jan 16 19:10:34 GMT 2012
16/01/2012 19:10:46 : INFO  : Initialised job
16/01/2012 19:10:49 : INFO  : Renaming log file 'phyre2_20120116_191033.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/1df4f8c6c13e8619/phyre_20120116_191033.log'
16/01/2012 19:10:52 : INFO  : Initialised job:
Sequence
>batch____
MTNLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG
RTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH
PLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSS
LKKQGVDKLRQKLDTWFSEMQPVEETQDGE

16/01/2012 19:10:54 : INFO  : Checked sequence
16/01/2012 19:11:01 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 19:11:03 : INFO  : PSI-BLAST 3 iterations
16/01/2012 19:12:37 : INFO  : PSI-BLAST 5 iterations
16/01/2012 19:14:46 : INFO  : Finished PSI-BLAST
16/01/2012 19:14:50 : INFO  : Running Buildali to generate a3m file
16/01/2012 19:42:40 : INFO  : Converting to HMM
16/01/2012 19:42:46 : INFO  : Calibrating HMM
16/01/2012 19:43:07 : INFO  : Searching HMM database
16/01/2012 19:47:21 : INFO  : Finished buildali
16/01/2012 19:47:25 : INFO  : Predicting secondary structure
16/01/2012 19:47:40 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 19:47:43 : INFO  : Predicting Disordered regions
16/01/2012 19:47:51 : INFO  : Predicted Disorder (Disopred)
16/01/2012 19:47:54 : INFO  : Running memsat_svm check
16/01/2012 19:51:35 : INFO  : Running memsat_svm full
16/01/2012 19:54:18 : INFO  : Predicted Transmembrane (memsat_svm) ID '1df4f8c6c13e8619'
16/01/2012 19:54:22 : INFO  : Initialising fold library search
16/01/2012 19:54:28 : INFO  : Initialised search input
16/01/2012 19:54:33 : INFO  : Building Ensemble models
16/01/2012 19:54:39 : INFO  : Building hh.d1svia_.model.1.pdb
16/01/2012 19:55:08 : INFO  : Building hh.c3pqcA_.model.2.pdb
16/01/2012 19:55:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1df4f8c6c13e8619/hh.c3pqcA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1df4f8c6c13e8619/c3pqcA_.2.pdb
16/01/2012 19:55:39 : INFO  : Building hh.d1puia_.model.3.pdb
16/01/2012 19:56:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1df4f8c6c13e8619/hh.d1puia_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1df4f8c6c13e8619/d1puia_.3.pdb
16/01/2012 19:56:11 : INFO  : Building d1svia_.1.pdb
16/01/2012 19:56:41 : INFO  : Building c3pqcA_.2.pdb
16/01/2012 19:57:10 : INFO  : Building d1puia_.3.pdb
16/01/2012 19:57:39 : INFO  : Building c2e87A_.4.pdb
16/01/2012 19:58:07 : INFO  : Building c2hjgA_.5.pdb
16/01/2012 19:58:38 : INFO  : Building c3ievA_.6.pdb
16/01/2012 19:59:10 : INFO  : Building c1egaB_.7.pdb
16/01/2012 19:59:40 : INFO  : Building c1mkyA_.8.pdb
16/01/2012 20:00:11 : INFO  : Building c1wf3A_.9.pdb
16/01/2012 20:00:42 : INFO  : Building c2qthA_.10.pdb
16/01/2012 20:01:13 : INFO  : Building c1xzqA_.11.pdb
16/01/2012 20:01:41 : INFO  : Building c1udxA_.12.pdb
16/01/2012 20:02:08 : INFO  : Building c3gehA_.13.pdb
16/01/2012 20:02:36 : INFO  : Building c1wb1C_.14.pdb
16/01/2012 20:03:02 : INFO  : Building c1kk3A_.15.pdb
16/01/2012 20:03:27 : INFO  : Building c1lnzA_.16.pdb
16/01/2012 20:03:53 : INFO  : Building c3lx8A_.17.pdb
16/01/2012 20:04:19 : INFO  : Building c3a1vB_.18.pdb
16/01/2012 20:04:45 : INFO  : Building c3izyP_.19.pdb
16/01/2012 20:05:12 : INFO  : Building c3qq5A_.20.pdb
16/01/2012 20:07:05 : INFO  : Finished HH model building
16/01/2012 20:07:09 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 20:08:26 : INFO  : html domain output complete ID '1df4f8c6c13e8619'
16/01/2012 20:43:29 : INFO  : Run end  : Mon Jan 16 20:43:27 GMT 2012
