Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	S	N	T	F	T	L	G	T	K	S	V	N	R	L	G	Y	G	A	M	Q	L	A	G	P	G	V	F	G	P	P	R	D	R	H	V	A	I	T	V	L	R	E	A	L	A	L	G	V	N	H	I	D	T	S	D	F	Y	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	H	V	T	N	Q	I	I	R	E	A	L	Y	P	Y	S	D	D	L	T	I	V	T	K	I	G	A	R	R	G	E	D	A	S	W	L	P	A	F	S	P	A	E	L	Q	K	A	V	H	D	N	L	R	N	L	G	L	D	V	L
Secondary structure
SS confidence
Disorder																													?		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	V	V	N	L	R	V	M	M	G	D	G	H	G	P	A	E	G	S	I	E	A	S	L	T	V	L	A	E	M	Q	Q	Q	G	L	V	K	H	I	G	L	S	N	V	T	P	T	Q	V	A	E	A	R	K	I	A	E	I	V	C
Secondary structure
SS confidence
Disorder												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	Q	N	E	Y	N	I	A	H	R	A	D	D	A	M	I	D	A	L	A	H	D	G	I	A	Y	V	P	F	F	P	L	G	G	F	T	P	L	Q	S	S	T	L	S	D	V	A	A	S	L	G	A	T	P	M	Q	V	A	L	A
Secondary structure
SS confidence
Disorder																																			?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Sequence		W	L	L	Q	R	S	P	N	I	L	L	I	P	G	T	S	S	V	A	H	L	R	E	N	M	A	A	E	K	L	H	L	S	E	E	V	L	S	T	L	D	G	I	S	R	E
Secondary structure
SS confidence
Disorder																																												?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1lqa chain A Region: 1 - 285 Aligned: 279 Modelled: 285 Confidence: 100.0% Identity: 26% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1pyf chain A Region: 2 - 285 Aligned: 276 Modelled: 278 Confidence: 100.0% Identity: 26% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3erp chain A Region: 1 - 286 Aligned: 274 Modelled: 286 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium Phyre2 PDB 1pz1 chain A Region: 1 - 286 Aligned: 277 Modelled: 285 Confidence: 100.0% Identity: 20% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1ur3 chain M Region: 1 - 286 Aligned: 275 Modelled: 286 Confidence: 100.0% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3n2t chain A Region: 1 - 285 Aligned: 276 Modelled: 285 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans Phyre2 PDB 1ynp chain A Region: 1 - 286 Aligned: 258 Modelled: 280 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form) Phyre2 PDB 3n6q chain F Region: 1 - 286 Aligned: 274 Modelled: 286 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: F: PDB Molecule:yghz aldo-keto reductase; PDBTitle: crystal structure of yghz from e. coli Phyre2 PDB 3eau chain A domain 1 Region: 3 - 286 Aligned: 271 Modelled: 284 Confidence: 100.0% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3lut chain A Region: 3 - 286 Aligned: 271 Modelled: 284 Confidence: 100.0% Identity: 25% PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2 Phyre2 PDB 1j96 chain A Region: 1 - 286 Aligned: 264 Modelled: 277 Confidence: 100.0% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1q5m chain A Region: 1 - 286 Aligned: 263 Modelled: 283 Confidence: 100.0% Identity: 23% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3up8 chain B Region: 2 - 286 Aligned: 256 Modelled: 283 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b; PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b Phyre2 PDB 1gve chain A Region: 14 - 285 Aligned: 254 Modelled: 272 Confidence: 100.0% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3f7j chain B Region: 2 - 286 Aligned: 254 Modelled: 285 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:yvgn protein; PDBTitle: b.subtilis yvgn Phyre2 PDB 3h7u chain A Region: 1 - 285 Aligned: 260 Modelled: 276 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 Phyre2 PDB 1us0 chain A Region: 1 - 285 Aligned: 260 Modelled: 285 Confidence: 100.0% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1afs chain A Region: 1 - 285 Aligned: 263 Modelled: 276 Confidence: 100.0% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 2bp1 chain C Region: 12 - 285 Aligned: 255 Modelled: 274 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2; PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph Phyre2 PDB 1vbj chain B Region: 1 - 285 Aligned: 258 Modelled: 276 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:prostaglandin f synthase; PDBTitle: the crystal structure of prostaglandin f synthase from2 trypanosoma brucei Phyre2 1 d1lqaa_ 2 d1pyfa_ 3 c3erpA_ 4 d1pz1a_ 5 d1ur3m_ 6 c3n2tA_ 7 c1ynpA_ 8 c3n6qF_ 9 d3eaua1 10 c3lutA_ 11 d1j96a_ 12 d1q5ma_ 13 c3up8B_ 14 d1gvea_ 15 c3f7jB_ 16 c3h7uA_ 17 d1us0a_ 18 d1afsa_ 19 c2bp1C_ 20 c1vbjB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1lqaa_ 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 2 d1pyfa_ 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 3 c3erpA_ 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium 4 d1pz1a_ 100.0 20 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 5 d1ur3m_ 100.0 21 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 6 c3n2tA_ 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans 7 c1ynpA_ 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form) 8 c3n6qF_ 100.0 24 PDB header:oxidoreductase Chain: F: PDB Molecule:yghz aldo-keto reductase; PDBTitle: crystal structure of yghz from e. coli 9 d3eaua1 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 10 c3lutA_ 100.0 25 PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2 11 d1j96a_ 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 12 d1q5ma_ 100.0 23 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 13 c3up8B_ 100.0 24 PDB header:oxidoreductase Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b; PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b 14 d1gvea_ 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 15 c3f7jB_ 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:yvgn protein; PDBTitle: b.subtilis yvgn 16 c3h7uA_ 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 17 d1us0a_ 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 18 d1afsa_ 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 19 c2bp1C_ 100.0 23 PDB header:oxidoreductase Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2; PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph 20 c1vbjB_ 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:prostaglandin f synthase; PDBTitle: the crystal structure of prostaglandin f synthase from2 trypanosoma brucei 21 c2wztA_ not modelled 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of a mycobacterium aldo-keto reductase in2 its apo and liganded form 22 c3o0kB_ not modelled 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:aldo/keto reductase; PDBTitle: crystal structure of aldo/keto reductase from brucella melitensis 23 d1qwka_ not modelled 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 24 d1hqta_ not modelled 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 25 d1mi3a_ not modelled 100.0 20 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 26 c3h7rA_ not modelled 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c8 27 d1s1pa_ not modelled 100.0 23 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 28 d1frba_ not modelled 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 29 c3b3dA_ not modelled 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:putative morphine dehydrogenase; PDBTitle: b.subtilis ytbe 30 d1hw6a_ not modelled 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 31 d2alra_ not modelled 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 32 c1zgdB_ not modelled 100.0 21 PDB header:plant protein Chain: B: PDB Molecule:chalcone reductase; PDBTitle: chalcone reductase complexed with nadp+ at 1.7 angstrom2 resolution 33 c3buvB_ not modelled 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:3-oxo-5-beta-steroid 4-dehydrogenase; PDBTitle: crystal structure of human delta(4)-3-ketosteroid 5-beta-reductase in2 complex with nadp and hepes. resolution: 1.35 a. 34 c2bgsA_ not modelled 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:aldose reductase; PDBTitle: holo aldose reductase from barley 35 d1c9wa_ not modelled 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 36 d1vp5a_ not modelled 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 37 d1ah4a_ not modelled 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 38 d1mzra_ not modelled 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 39 c3krbB_ not modelled 100.0 25 PDB header:oxidoreductase Chain: B: PDB Molecule:aldose reductase; PDBTitle: structure of aldose reductase from giardia lamblia at 1.75a resolution 40 c3ln3A_ not modelled 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodiol dehydrogenase; PDBTitle: crystal structure of putative reductase (np_038806.2) from2 mus musculus at 1.18 a resolution 41 c3ktcB_ not modelled 88.5 14 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution 42 d1jpma1 not modelled 73.4 11 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 43 c3g8rA_ not modelled 56.9 20 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 44 c2ph5A_ not modelled 55.3 17 PDB header:transferase Chain: A: PDB Molecule:homospermidine synthase; PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54 45 c2vc7A_ not modelled 38.2 11 PDB header:hydrolase Chain: A: PDB Molecule:aryldialkylphosphatase; PDBTitle: structural basis for natural lactonase and promiscuous2 phosphotriesterase activities 46 c3ik4A_ not modelled 37.5 10 PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus 47 c3oqbF_ not modelled 35.1 12 PDB header:oxidoreductase Chain: F: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110 48 c6paxA_ not modelled 30.9 20 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions 49 d2gdqa1 not modelled 30.5 10 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 50 d1yeya1 not modelled 30.2 16 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 51 d1pdnc_ not modelled 27.3 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 52 c2k27A_ not modelled 24.9 20 PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain 53 d1vp8a_ not modelled 24.4 18 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 54 c3noeA_ not modelled 23.9 11 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa 55 c2qdeA_ not modelled 23.8 9 PDB header:lyase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1 56 d1k78a1 not modelled 22.7 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 57 c3ng3A_ not modelled 22.2 21 PDB header:lyase Chain: A: PDB Molecule:deoxyribose-phosphate aldolase; PDBTitle: crystal structure of deoxyribose phosphate aldolase from mycobacterium2 avium 104 in a schiff base with an unknown aldehyde 58 c1xuzA_ not modelled 20.8 19 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 59 d1vcva1 not modelled 20.7 18 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 60 d6paxa1 not modelled 20.7 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 61 c3oa3A_ not modelled 20.2 14 PDB header:lyase Chain: A: PDB Molecule:aldolase; PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 coccidioides immitis 62 c1vliA_ not modelled 19.9 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 63 d1o0ya_ not modelled 18.8 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 64 c1jpmB_ not modelled 18.4 11 PDB header:isomerase Chain: B: PDB Molecule:l-ala-d/l-glu epimerase; PDBTitle: l-ala-d/l-glu epimerase 65 c2yciX_ not modelled 17.6 14 PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native 66 c3ddmD_ not modelled 17.0 12 PDB header:lyase Chain: D: PDB Molecule:putative mandelate racemase/muconate lactonizing PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme from bordetella bronchiseptica rb50 67 c3l8mA_ not modelled 16.9 10 PDB header:transferase Chain: A: PDB Molecule:probable thiamine pyrophosphokinase; PDBTitle: crystal structure of a probable thiamine pyrophosphokinase2 from staphylococcus saprophyticus subsp. saprophyticus.3 northeast structural genomics consortium target id syr86 68 c2oz8B_ not modelled 15.6 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mll7089 protein; PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti 69 d1f6ya_ not modelled 15.4 18 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 70 c3ngjC_ not modelled 14.2 17 PDB header:lyase Chain: C: PDB Molecule:deoxyribose-phosphate aldolase; PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica 71 c3smaD_ not modelled 14.2 18 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 72 d1t57a_ not modelled 13.9 21 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 73 d1zata2 not modelled 13.0 13 Fold:L,D-transpeptidase pre-catalytic domain-like Superfamily:L,D-transpeptidase pre-catalytic domain-like Family:L,D-transpeptidase pre-catalytic domain-like 74 c3ic5A_ not modelled 12.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative saccharopine dehydrogenase; PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi. 75 d1ydwa1 not modelled 12.1 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 76 c3ihkC_ not modelled 11.7 15 PDB header:transferase Chain: C: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from2 s.mutans, northeast structural genomics consortium target3 smr83 77 c3e4fB_ not modelled 11.6 25 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 78 d1wlza1 not modelled 11.4 22 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 79 c1wlzD_ not modelled 11.4 22 PDB header:unknown function Chain: D: PDB Molecule:cap-binding protein complex interacting protein PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis 80 c2p0oA_ not modelled 9.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf871; PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function 81 d1sjda1 not modelled 9.4 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 82 d2nu7a1 not modelled 8.6 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 83 c3ju2A_ not modelled 8.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 84 c2ixaA_ not modelled 8.3 17 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 85 c3dtyA_ not modelled 8.2 19 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae 86 c3bjsB_ not modelled 8.2 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a member of enolase superfamily from polaromonas2 sp. js666 87 d1gr0a1 not modelled 8.2 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 88 d2ou3a1 not modelled 8.2 13 Fold:TerB-like Superfamily:TerB-like Family:COG3793-like 89 c1lc3A_ not modelled 7.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:biliverdin reductase a; PDBTitle: crystal structure of a biliverdin reductase enzyme-cofactor2 complex 90 d1nu5a1 not modelled 7.4 8 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 91 d2ijqa1 not modelled 7.3 30 Fold:Hyaluronidase domain-like Superfamily:TTHA0068-like Family:TTHA0068-like 92 c3melC_ not modelled 7.2 30 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:thiamin pyrophosphokinase family protein; PDBTitle: crystal structure of thiamin pyrophosphokinase family protein from2 enterococcus faecalis, northeast structural genomics consortium3 target efr150 93 d2plca_ not modelled 7.2 38 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Bacterial PLC 94 c3es8D_ not modelled 6.9 11 PDB header:isomerase, lyase Chain: D: PDB Molecule:muconate cycloisomerase; PDBTitle: crystal structure of divergent enolase from oceanobacillus2 iheyensis complexed with mg and l-malate. 95 d1x87a_ not modelled 6.9 13 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 96 d1bxba_ not modelled 6.8 14 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 97 c2wjeA_ not modelled 6.7 30 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb; PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4. 98 d2nyga1 not modelled 6.5 18 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Aminoglycoside 3-N-acetyltransferase-like 99 d1mzha_ not modelled 6.5 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0