16/01/2012 11:10:53 : INFO  : Run start: Mon Jan 16 11:10:53 GMT 2012
16/01/2012 11:10:53 : INFO  : Initialised job
16/01/2012 11:10:53 : INFO  : Renaming log file 'phyre2_20120116_111053.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/phyre_20120116_111053.log'
16/01/2012 11:10:53 : INFO  : Initialised job:
Sequence
>batch____
MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLREALALGVNHIDTSDFYG
PHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPAELQKAVHDNLRNLGLDVL
DVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIGLSNVTPTQVAEARKIAEIVC
VQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATPMQVALA
WLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEVLSTLDGISRE

16/01/2012 11:10:53 : INFO  : Checked sequence
16/01/2012 11:10:53 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 11:10:53 : INFO  : PSI-BLAST 3 iterations
16/01/2012 11:13:06 : INFO  : PSI-BLAST 5 iterations
16/01/2012 11:15:43 : INFO  : Finished PSI-BLAST
16/01/2012 11:15:43 : INFO  : Running Buildali to generate a3m file
16/01/2012 11:41:19 : INFO  : Converting to HMM
16/01/2012 11:41:22 : INFO  : Calibrating HMM
16/01/2012 11:41:29 : INFO  : Searching HMM database
16/01/2012 11:46:57 : INFO  : Finished buildali
16/01/2012 11:46:57 : INFO  : Predicting secondary structure
16/01/2012 11:46:57 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 11:46:57 : INFO  : Predicting Disordered regions
16/01/2012 11:46:57 : INFO  : Predicted Disorder (Disopred)
16/01/2012 11:46:57 : INFO  : Running memsat_svm check
16/01/2012 11:51:04 : INFO  : Globular protein
16/01/2012 11:51:04 : INFO  : Predicted Transmembrane (memsat_svm) ID '1d5f071109a354c6'
16/01/2012 11:51:04 : INFO  : Initialising fold library search
16/01/2012 11:51:04 : INFO  : Initialised search input
16/01/2012 11:51:04 : INFO  : Building Ensemble models
16/01/2012 11:51:04 : INFO  : Building hh.d1lqaa_.model.1.pdb
16/01/2012 11:51:04 : INFO  : Building hh.d1pyfa_.model.2.pdb
16/01/2012 11:51:05 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/hh.d1pyfa_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/d1pyfa_.2.pdb
16/01/2012 11:51:05 : INFO  : Building hh.c3erpA_.model.3.pdb
16/01/2012 11:51:05 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/hh.c3erpA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/c3erpA_.3.pdb
16/01/2012 11:51:05 : INFO  : Building hh.d1pz1a_.model.4.pdb
16/01/2012 11:51:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/hh.d1pz1a_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/d1pz1a_.4.pdb
16/01/2012 11:51:06 : INFO  : Building hh.d1ur3m_.model.5.pdb
16/01/2012 11:51:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/hh.d1ur3m_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/d1ur3m_.5.pdb
16/01/2012 11:51:06 : INFO  : Building hh.c3n2tA_.model.6.pdb
16/01/2012 11:51:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/hh.c3n2tA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1d5f071109a354c6/c3n2tA_.6.pdb
16/01/2012 11:51:07 : INFO  : Building d1lqaa_.1.pdb
16/01/2012 11:51:07 : INFO  : Building d1pyfa_.2.pdb
16/01/2012 11:51:07 : INFO  : Building c3erpA_.3.pdb
16/01/2012 11:51:08 : INFO  : Building d1pz1a_.4.pdb
16/01/2012 11:51:08 : INFO  : Building d1ur3m_.5.pdb
16/01/2012 11:51:09 : INFO  : Building c3n2tA_.6.pdb
16/01/2012 11:51:09 : INFO  : Building c1ynpA_.7.pdb
16/01/2012 11:51:09 : INFO  : Building c3n6qF_.8.pdb
16/01/2012 11:51:10 : INFO  : Building d3eaua1.9.pdb
16/01/2012 11:51:10 : INFO  : Building c3lutA_.10.pdb
16/01/2012 11:51:12 : INFO  : Building d1j96a_.11.pdb
16/01/2012 11:51:12 : INFO  : Building d1q5ma_.12.pdb
16/01/2012 11:51:13 : INFO  : Building c3up8B_.13.pdb
16/01/2012 11:51:13 : INFO  : Building d1gvea_.14.pdb
16/01/2012 11:51:14 : INFO  : Building c3f7jB_.15.pdb
16/01/2012 11:51:14 : INFO  : Building c3h7uA_.16.pdb
16/01/2012 11:51:15 : INFO  : Building d1us0a_.17.pdb
16/01/2012 11:51:15 : INFO  : Building d1afsa_.18.pdb
16/01/2012 11:51:15 : INFO  : Building c2bp1C_.19.pdb
16/01/2012 11:51:16 : INFO  : Building c1vbjB_.20.pdb
16/01/2012 11:51:27 : INFO  : Finished HH model building
16/01/2012 11:51:29 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 11:51:35 : INFO  : html domain output complete ID '1d5f071109a354c6'
16/01/2012 13:37:31 : INFO  : Run end  : Mon Jan 16 13:37:31 GMT 2012
