Secondary structure and disorder prediction

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Sequence		M	A	F	S	N	P	F	D	D	P	Q	G	A	F	Y	I	L	R	N	A	Q	G	Q	F	S	L	W	P	Q	Q	C	V	L	P	A	G	W	D	I	V	C	Q	P	Q	S	Q	A	S	C	Q	Q	W	L	E	A	H	W	R	T	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.
Sequence		T	P	T	N	F	T	Q	L	Q	E	A	Q
Secondary structure
SS confidence
Disorder											?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gpf chain A domain 1 Region: 3 - 72 Aligned: 70 Modelled: 70 Confidence: 100.0% Identity: 23% Fold: MbtH/L9 domain-like Superfamily: MbtH-like Family: MbtH-like Phyre2 PDB 2khr chain A Region: 4 - 72 Aligned: 69 Modelled: 69 Confidence: 100.0% Identity: 39% PDB header:biosynthetic protein Chain: A: PDB Molecule:protein mbth; PDBTitle: solution structure of rv2377c, a mbth-like protein from mycobacterium2 tuberculosis Phyre2 PDB 2pst chain X domain 1 Region: 10 - 70 Aligned: 61 Modelled: 61 Confidence: 100.0% Identity: 23% Fold: MbtH/L9 domain-like Superfamily: MbtH-like Family: MbtH-like Phyre2 PDB 2jh3 chain C Region: 19 - 72 Aligned: 54 Modelled: 54 Confidence: 21.2% Identity: 22% PDB header:ribosomal protein Chain: C: PDB Molecule:ribosomal protein s2-related protein; PDBTitle: the crystal structure of dr2241 from deinococcus2 radiodurans at 1.9 a resolution reveals a multi-domain3 protein with structural similarity to chelatases but also4 with two additional novel domains Phyre2 PDB 2b6c chain A domain 1 Region: 36 - 68 Aligned: 31 Modelled: 33 Confidence: 19.2% Identity: 13% Fold: alpha-alpha superhelix Superfamily: ARM repeat Family: BC3264-like Phyre2 PDB 1j0h chain A domain 2 Region: 9 - 46 Aligned: 38 Modelled: 38 Confidence: 18.4% Identity: 13% Fold: Glycosyl hydrolase domain Superfamily: Glycosyl hydrolase domain Family: alpha-Amylases, C-terminal beta-sheet domain Phyre2 PDB 1iqq chain A Region: 24 - 64 Aligned: 41 Modelled: 41 Confidence: 16.0% Identity: 20% Fold: Ribonuclease Rh-like Superfamily: Ribonuclease Rh-like Family: Ribonuclease Rh-like Phyre2 PDB 1f8a chain B domain 1 Region: 28 - 45 Aligned: 18 Modelled: 18 Confidence: 12.2% Identity: 28% Fold: WW domain-like Superfamily: WW domain Family: WW domain Phyre2 PDB 2zjr chain G domain 1 Region: 10 - 22 Aligned: 13 Modelled: 13 Confidence: 11.3% Identity: 38% Fold: Ribosomal protein L13 Superfamily: Ribosomal protein L13 Family: Ribosomal protein L13 Phyre2 PDB 3cf5 chain G Region: 10 - 22 Aligned: 13 Modelled: 13 Confidence: 11.3% Identity: 38% PDB header:ribosome/antibiotic Chain: G: PDB Molecule:50s ribosomal protein l13; PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans Phyre2 PDB 1k9r chain A Region: 28 - 46 Aligned: 19 Modelled: 19 Confidence: 10.9% Identity: 37% Fold: WW domain-like Superfamily: WW domain Family: WW domain Phyre2 PDB 1nmv chain A domain 1 Region: 28 - 45 Aligned: 18 Modelled: 18 Confidence: 10.7% Identity: 28% Fold: WW domain-like Superfamily: WW domain Family: WW domain Phyre2 PDB 2ai4 chain A Region: 3 - 23 Aligned: 21 Modelled: 20 Confidence: 10.6% Identity: 33% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein so1698; PDBTitle: structure of protein of unknown function so1698 from shewanella2 oneidensis Phyre2 PDB 3pfy chain A Region: 46 - 62 Aligned: 17 Modelled: 17 Confidence: 10.5% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 5; PDBTitle: the catalytic domain of human otud5 Phyre2 PDB 1ymz chain A Region: 31 - 46 Aligned: 16 Modelled: 16 Confidence: 10.4% Identity: 25% PDB header:unknown function Chain: A: PDB Molecule:cc45; PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis Phyre2 PDB 2zaj chain A Region: 27 - 46 Aligned: 20 Modelled: 20 Confidence: 10.3% Identity: 30% PDB header:protein binding Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz PDBTitle: solution structure of the short-isoform of the second ww2 domain from the human membrane-associated guanylate kinase,3 ww and pdz domain-containing protein 1 (magi-1) Phyre2 PDB 2ho2 chain A domain 1 Region: 32 - 45 Aligned: 14 Modelled: 14 Confidence: 10.0% Identity: 43% Fold: WW domain-like Superfamily: WW domain Family: WW domain Phyre2 PDB 1g0w chain A domain 2 Region: 7 - 26 Aligned: 20 Modelled: 20 Confidence: 9.9% Identity: 10% Fold: Glutamine synthetase/guanido kinase Superfamily: Glutamine synthetase/guanido kinase Family: Guanido kinase catalytic domain Phyre2 PDB 3mc2 chain C Region: 34 - 60 Aligned: 27 Modelled: 27 Confidence: 9.8% Identity: 19% PDB header:lyase inhibitor Chain: C: PDB Molecule:inhibitor of carbonic anhydrase; PDBTitle: crystal structure of the murine inhibitor of carbonic anhydrase Phyre2 PDB 1u6r chain A domain 2 Region: 7 - 26 Aligned: 20 Modelled: 20 Confidence: 9.7% Identity: 10% Fold: Glutamine synthetase/guanido kinase Superfamily: Glutamine synthetase/guanido kinase Family: Guanido kinase catalytic domain Phyre2 1 d2gpfa1 2 c2khrA_ 3 d2pstx1 4 c2jh3C_ 5 d2b6ca1 6 d1j0ha2 7 d1iqqa_ 8 d1f8ab1 9 d2zjrg1 10 c3cf5G_ 11 d1k9ra_ 12 d1nmva1 13 c2ai4A_ 14 c3pfyA_ 15 c1ymzA_ 16 c2zajA_ 17 d2ho2a1 18 d1g0wa2 19 c3mc2C_ 20 d1u6ra2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2gpfa1 100.0 23 Fold:MbtH/L9 domain-like Superfamily:MbtH-like Family:MbtH-like 2 c2khrA_ 100.0 39 PDB header:biosynthetic protein Chain: A: PDB Molecule:protein mbth; PDBTitle: solution structure of rv2377c, a mbth-like protein from mycobacterium2 tuberculosis 3 d2pstx1 100.0 23 Fold:MbtH/L9 domain-like Superfamily:MbtH-like Family:MbtH-like 4 c2jh3C_ 21.2 22 PDB header:ribosomal protein Chain: C: PDB Molecule:ribosomal protein s2-related protein; PDBTitle: the crystal structure of dr2241 from deinococcus2 radiodurans at 1.9 a resolution reveals a multi-domain3 protein with structural similarity to chelatases but also4 with two additional novel domains 5 d2b6ca1 19.2 13 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:BC3264-like 6 d1j0ha2 18.4 13 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 7 d1iqqa_ 16.0 20 Fold:Ribonuclease Rh-like Superfamily:Ribonuclease Rh-like Family:Ribonuclease Rh-like 8 d1f8ab1 12.2 28 Fold:WW domain-like Superfamily:WW domain Family:WW domain 9 d2zjrg1 11.3 38 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 10 c3cf5G_ 11.3 38 PDB header:ribosome/antibiotic Chain: G: PDB Molecule:50s ribosomal protein l13; PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans 11 d1k9ra_ 10.9 37 Fold:WW domain-like Superfamily:WW domain Family:WW domain 12 d1nmva1 10.7 28 Fold:WW domain-like Superfamily:WW domain Family:WW domain 13 c2ai4A_ 10.6 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein so1698; PDBTitle: structure of protein of unknown function so1698 from shewanella2 oneidensis 14 c3pfyA_ 10.5 12 PDB header:hydrolase Chain: A: PDB Molecule:otu domain-containing protein 5; PDBTitle: the catalytic domain of human otud5 15 c1ymzA_ 10.4 25 PDB header:unknown function Chain: A: PDB Molecule:cc45; PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis 16 c2zajA_ 10.3 30 PDB header:protein binding Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz PDBTitle: solution structure of the short-isoform of the second ww2 domain from the human membrane-associated guanylate kinase,3 ww and pdz domain-containing protein 1 (magi-1) 17 d2ho2a1 10.0 43 Fold:WW domain-like Superfamily:WW domain Family:WW domain 18 d1g0wa2 9.9 10 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 19 c3mc2C_ 9.8 19 PDB header:lyase inhibitor Chain: C: PDB Molecule:inhibitor of carbonic anhydrase; PDBTitle: crystal structure of the murine inhibitor of carbonic anhydrase 20 d1u6ra2 9.7 10 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 21 c2ftcH_ not modelled 9.6 15 PDB header:ribosome Chain: H: PDB Molecule:39s ribosomal protein l13, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 22 c2ysbA_ not modelled 9.2 22 PDB header:protein binding Chain: A: PDB Molecule:salvador homolog 1 protein; PDBTitle: solution structure of the first ww domain from the mouse2 salvador homolog 1 protein (sav1) 23 c3d5bN_ not modelled 8.9 31 PDB header:ribosome Chain: N: PDB Molecule:50s ribosomal protein l13; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. 24 d1m15a2 not modelled 8.9 15 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 25 d2ysca1 not modelled 8.9 50 Fold:WW domain-like Superfamily:WW domain Family:WW domain 26 d1pina1 not modelled 8.8 36 Fold:WW domain-like Superfamily:WW domain Family:WW domain 27 c2kykA_ not modelled 8.5 27 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog; PDBTitle: the sandwich region between two lmp2a py motif regulates the2 interaction between aip4ww2domain and py motif 28 c3nicA_ not modelled 8.3 27 PDB header:hydrolase/dna Chain: A: PDB Molecule:eco29kir; PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f 29 c1qk1H_ not modelled 8.2 15 PDB header:transferase (creatine kinase) Chain: H: PDB Molecule:creatine kinase, ubiquitous mitochondrial; PDBTitle: crystal structure of human ubiquitous mitochondrial2 creatine kinase 30 d2j01n1 not modelled 8.2 31 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 31 c2lawA_ not modelled 8.2 27 PDB header:signaling protein/transcription Chain: A: PDB Molecule:yorkie homolog; PDBTitle: structure of the second ww domain from human yap in complex with a2 human smad1 derived peptide 32 d2ilxa1 not modelled 8.1 23 Fold:LigT-like Superfamily:LigT-like Family:2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domain 33 d1qh4a2 not modelled 8.0 10 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 34 c3l4hA_ not modelled 7.8 33 PDB header:protein binding Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw1; PDBTitle: helical box domain and second ww domain of the human e3 ubiquitin-2 protein ligase hecw1 35 c3bboL_ not modelled 7.8 46 PDB header:ribosome Chain: L: PDB Molecule:ribosomal protein l13; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 36 d1qk1a2 not modelled 7.7 15 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 37 c1tk7A_ not modelled 7.6 19 PDB header:signaling protein Chain: A: PDB Molecule:cg4244-pb; PDBTitle: nmr structure of ww domains (ww3-4) from suppressor of2 deltex 38 c2lb0A_ not modelled 7.6 33 PDB header:signaling protein/transcription Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1; PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide 39 c2ysgA_ not modelled 7.5 21 PDB header:protein binding Chain: A: PDB Molecule:syntaxin-binding protein 4; PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4 40 c1e0mA_ not modelled 7.4 31 PDB header:de novo protein Chain: A: PDB Molecule:wwprototype; PDBTitle: prototype ww domain 41 d2jmfa1 not modelled 7.3 33 Fold:WW domain-like Superfamily:WW domain Family:WW domain 42 d1vrpa2 not modelled 7.1 10 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 43 d2f21a1 not modelled 7.0 29 Fold:WW domain-like Superfamily:WW domain Family:WW domain 44 d1crka2 not modelled 7.0 10 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Guanido kinase catalytic domain 45 c1wr4A_ not modelled 7.0 25 PDB header:ligase Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2; PDBTitle: solution structure of the second ww domain of nedd4-2 46 c1ce2A_ not modelled 7.0 13 PDB header:metal transport Chain: A: PDB Molecule:protein (lactoferrin); PDBTitle: structure of diferric buffalo lactoferrin at 2.5a resolution 47 c2lazA_ not modelled 6.9 33 PDB header:signaling protein/transcription Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1; PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide 48 c2dx0B_ not modelled 6.9 16 PDB header:hydrolase Chain: B: PDB Molecule:phospholipase c, gamma 2; PDBTitle: crystal structure of the n-terminal sh2 domain of mouse2 phospholipase c-gamma 2 49 d2itka1 not modelled 6.9 38 Fold:WW domain-like Superfamily:WW domain Family:WW domain 50 d1b1xa2 not modelled 6.8 6 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin 51 c2djyA_ not modelled 6.8 33 PDB header:ligase/signaling protein Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2; PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex 52 d1dota2 not modelled 6.8 6 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin 53 c1yr3A_ not modelled 6.8 18 PDB header:transferase Chain: A: PDB Molecule:xanthosine phosphorylase; PDBTitle: escherichia coli purine nucleoside phosphorylase ii, the2 product of the xapa gene 54 c1lfgA_ not modelled 6.6 19 PDB header:transferrin Chain: A: PDB Molecule:lactoferrin; PDBTitle: molecular replacement solution of the structure of apolactoferrin, a2 protein displaying large-scale conformational change 55 c2krxA_ not modelled 6.6 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asl3597 protein; PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244. 56 c1rl9A_ not modelled 6.6 15 PDB header:transferase Chain: A: PDB Molecule:arginine kinase; PDBTitle: crystal structure of creatine-adp arginine kinase ternary2 complex 57 c2vncB_ not modelled 6.5 25 PDB header:hydrolase Chain: B: PDB Molecule:glycogen operon protein glgx; PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus 58 c3l2eB_ not modelled 6.5 10 PDB header:transferase Chain: B: PDB Molecule:glycocyamine kinase beta chain; PDBTitle: glycocyamine kinase, alpha-beta heterodimer from marine worm2 namalycastis sp. 59 c2kxqA_ not modelled 6.4 26 PDB header:protein binding Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf2; PDBTitle: solution structure of smurf2 ww2 and ww3 bound to smad7 py motif2 containing peptide 60 c1yiuA_ not modelled 6.4 27 PDB header:ligase Chain: A: PDB Molecule:itchy e3 ubiquitin protein ligase; PDBTitle: itch e3 ubiquitin ligase ww3 domain 61 c2l4jA_ not modelled 6.4 32 PDB header:transcription Chain: A: PDB Molecule:yes-associated protein 2 (yap2); PDBTitle: yap ww2 62 c3bvsA_ not modelled 6.3 12 PDB header:hydrolase Chain: A: PDB Molecule:alkylpurine dna glycosylase alkd; PDBTitle: crystal structure of bacillus cereus alkylpurine dna glycosylase alkd 63 d1i8gb_ not modelled 6.3 36 Fold:WW domain-like Superfamily:WW domain Family:WW domain 64 d1iama2 not modelled 6.3 43 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 65 d2e45a1 not modelled 6.2 67 Fold:WW domain-like Superfamily:WW domain Family:WW domain 66 c1ryxA_ not modelled 6.1 6 PDB header:metal transport Chain: A: PDB Molecule:ovotransferrin; PDBTitle: crystal structure of hen serum transferrin in apo- form 67 d1g3pa1 not modelled 6.0 29 Fold:N-terminal domains of the minor coat protein g3p Superfamily:N-terminal domains of the minor coat protein g3p Family:N-terminal domains of the minor coat protein g3p 68 c3ju6A_ not modelled 5.9 10 PDB header:transferase Chain: A: PDB Molecule:arginine kinase; PDBTitle: crystal structure of dimeric arginine kinase in complex with2 amppnp and arginine 69 c2yscA_ not modelled 5.6 25 PDB header:protein binding Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the ww domain from the human amyloid2 beta a4 precursor protein-binding family b member 3, apbb3 70 c2jmfA_ not modelled 5.6 28 PDB header:ligase/signaling protein Chain: A: PDB Molecule:e3 ubiquitin-protein ligase suppressor of deltex; PDBTitle: solution structure of the su(dx) ww4- notch py peptide2 complex 71 d1dota1 not modelled 5.5 6 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin 72 c2yshA_ not modelled 5.5 32 PDB header:protein binding Chain: A: PDB Molecule:growth-arrest-specific protein 7; PDBTitle: solution structure of the ww domain from the human growth-2 arrest-specific protein 7, gas-7 73 c2hauA_ not modelled 5.4 19 PDB header:metal transport Chain: A: PDB Molecule:serotransferrin; PDBTitle: apo-human serum transferrin (non-glycosylated) 74 c1i0eD_ not modelled 5.3 10 PDB header:transferase Chain: D: PDB Molecule:creatine kinase,m chain; PDBTitle: crystal structure of creatine kinase from human muscle 75 c2ysfA_ not modelled 5.2 27 PDB header:protein binding Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog; PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch 76 c2kieA_ not modelled 5.2 33 PDB header:hydrolase Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: a ph domain within ocrl bridges clathrin mediated membrane2 trafficking to phosphoinositide metabolis 77 d2c5ra1 not modelled 5.2 23 Fold:Phage replication organizer domain Superfamily:Phage replication organizer domain Family:Phage replication organizer domain 78 c2kq0A_ not modelled 5.2 36 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4; PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea 79 d1ejxb_ not modelled 5.1 27 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0