Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	K	Q	T	I	V	A	L	L	L	S	V	G	A	S	S	V	F	A	A	G	T	V	K	V	F	S	N	G	S	S	E	A	K	T	L	T	G	A	E	H	L	I	D	L	V	G	Q	P	R	L	A	N	S	W	W	P	G	A
Secondary structure
SS confidence
Disorder		?	?	?	?									?	?	?	?	?	?	?	?	?	?						?	?	?	?	?	?	?			?	?		?	?								?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	I	S	E	E	L	A	T	A	A	A	L	R	Q	Q	Q	A	L	L	T	R	L	A	E	Q	G	A	D	S	S	A	D	D	A	A	A	I	N	A	L	R	Q	Q	I	Q	A	L	K	V	T	G	R	Q	K	I	N	L	D	P	D
Secondary structure
SS confidence
Disorder					?	?																					?	?	?	?	?	?	?															?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	V	R	V	A	E	R	G	N	P	P	L	Q	G	N	Y	T	L	W	V	G	P	P	P	S	T	V	T	L	F	G	L	I	S	R	P	G	K	Q	P	F	T	P	G	R	D	V	A	S	Y	L	S	D	Q	S	L	L	S	G	A
Secondary structure
SS confidence
Disorder					?			?	?																																														?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	R	S	Y	A	W	V	V	Y	P	D	G	R	T	Q	K	A	P	V	A	Y	W	N	K	R	H	V	E	P	M	P	G	S	I	I	Y	V	G	L	A	D	S	V	W	S	E	T	P	D	A	L	N	A	D	I	L	Q	T	L	T
Secondary structure
SS confidence
Disorder														?				?	?			?		?	?	?	?	?																?	?	?	?
Disorder confidence
		.	.	.	.	.
Sequence		Q	R	I	P	Q
Secondary structure
SS confidence
Disorder			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3p42 chain D Region: 21 - 245 Aligned: 225 Modelled: 225 Confidence: 100.0% Identity: 43% PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon Phyre2 PDB 2j58 chain G Region: 15 - 239 Aligned: 211 Modelled: 220 Confidence: 99.6% Identity: 18% PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza Phyre2 PDB 2w8i chain G Region: 14 - 218 Aligned: 197 Modelled: 205 Confidence: 99.5% Identity: 17% PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. Phyre2 PDB 2fug chain 1 domain 3 Region: 147 - 192 Aligned: 42 Modelled: 46 Confidence: 77.6% Identity: 17% Fold: beta-Grasp (ubiquitin-like) Superfamily: Nqo1 middle domain-like Family: Nqo1 middle domain-like Phyre2 PDB 2fug chain A Region: 147 - 192 Aligned: 43 Modelled: 46 Confidence: 60.8% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 3ixz chain A Region: 177 - 217 Aligned: 33 Modelled: 40 Confidence: 59.6% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride Phyre2 PDB 3b8e chain C Region: 182 - 218 Aligned: 29 Modelled: 37 Confidence: 57.3% Identity: 21% PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump Phyre2 PDB 3rfu chain C Region: 182 - 217 Aligned: 29 Modelled: 36 Confidence: 51.0% Identity: 17% PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase Phyre2 PDB 3ibm chain B Region: 185 - 218 Aligned: 28 Modelled: 34 Confidence: 45.5% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila Phyre2 PDB 2zxe chain A Region: 182 - 218 Aligned: 29 Modelled: 37 Confidence: 44.8% Identity: 21% PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state Phyre2 PDB 1rws chain A Region: 157 - 211 Aligned: 49 Modelled: 55 Confidence: 37.2% Identity: 16% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: ThiS Phyre2 PDB 2vld chain A Region: 183 - 217 Aligned: 29 Modelled: 35 Confidence: 35.3% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi Phyre2 PDB 3j08 chain A Region: 182 - 217 Aligned: 28 Modelled: 36 Confidence: 34.5% Identity: 36% PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa Phyre2 PDB 2hc8 chain A Region: 182 - 226 Aligned: 37 Modelled: 45 Confidence: 33.4% Identity: 27% PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain Phyre2 PDB 1lr5 chain A Region: 185 - 218 Aligned: 34 Modelled: 34 Confidence: 29.9% Identity: 6% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 3jzv chain A Region: 185 - 218 Aligned: 28 Modelled: 32 Confidence: 29.4% Identity: 7% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. Phyre2 PDB 3b8c chain B Region: 177 - 217 Aligned: 33 Modelled: 41 Confidence: 28.0% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:atpase 2, plasma membrane-type; PDBTitle: crystal structure of a plasma membrane proton pump Phyre2 PDB 2r32 chain A Region: 207 - 222 Aligned: 16 Modelled: 16 Confidence: 27.3% Identity: 19% PDB header:immune system Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand PDBTitle: crystal structure of human gitrl variant Phyre2 PDB 1uik chain A domain 1 Region: 185 - 218 Aligned: 32 Modelled: 34 Confidence: 26.7% Identity: 6% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 1mhs chain A Region: 177 - 217 Aligned: 33 Modelled: 41 Confidence: 26.4% Identity: 30% PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase Phyre2 1 c3p42D_ 2 c2j58G_ 3 c2w8iG_ 4 d2fug13 5 c2fugA_ 6 c3ixzA_ 7 c3b8eC_ 8 c3rfuC_ 9 c3ibmB_ 10 c2zxeA_ 11 d1rwsa_ 12 c2vldA_ 13 c3j08A_ 14 c2hc8A_ 15 d1lr5a_ 16 c3jzvA_ 17 c3b8cB_ 18 c2r32A_ 19 d1uika1 20 c1mhsA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3p42D_ 100.0 43 PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon 2 c2j58G_ 99.6 18 PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza 3 c2w8iG_ 99.5 17 PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. 4 d2fug13 77.6 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Nqo1 middle domain-like Family:Nqo1 middle domain-like 5 c2fugA_ 60.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 6 c3ixzA_ 59.6 15 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 7 c3b8eC_ 57.3 21 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 8 c3rfuC_ 51.0 17 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 9 c3ibmB_ 45.5 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 10 c2zxeA_ 44.8 21 PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 11 d1rwsa_ 37.2 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 12 c2vldA_ 35.3 24 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 13 c3j08A_ 34.5 36 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 14 c2hc8A_ 33.4 27 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 15 d1lr5a_ 29.9 6 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 16 c3jzvA_ 29.4 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 17 c3b8cB_ 28.0 24 PDB header:hydrolase Chain: B: PDB Molecule:atpase 2, plasma membrane-type; PDBTitle: crystal structure of a plasma membrane proton pump 18 c2r32A_ 27.3 19 PDB header:immune system Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand PDBTitle: crystal structure of human gitrl variant 19 d1uika1 26.7 6 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 20 c1mhsA_ 26.4 30 PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase 21 c2kytA_ not modelled 26.1 36 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 22 c3kgzA_ not modelled 26.1 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 23 d1d1la_ not modelled 24.4 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 24 c3ff4A_ not modelled 23.3 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein chu_1412 25 d1vj2a_ not modelled 23.0 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 26 c2xdvA_ not modelled 22.8 11 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 27 d1uija1 not modelled 22.6 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 28 d1p9ka_ not modelled 22.5 12 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 29 d2cu3a1 not modelled 22.3 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 30 d3bu7a1 not modelled 22.1 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 31 c3bu7A_ not modelled 22.1 18 PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi 32 c2vpvA_ not modelled 22.0 18 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 33 d2d40a1 not modelled 21.8 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 34 c3s7eB_ not modelled 21.2 11 PDB header:allergen Chain: B: PDB Molecule:allergen ara h 1, clone p41b; PDBTitle: crystal structure of ara h 1 35 d1sq4a_ not modelled 21.2 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 36 d1dgwa_ not modelled 21.2 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 37 d1uija2 not modelled 20.8 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 38 d1y7ma2 not modelled 20.0 4 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 39 d1b2pa_ not modelled 19.8 23 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 40 c3kd4A_ not modelled 19.1 26 PDB header:hydrolase Chain: A: PDB Molecule:putative protease; PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution 41 d1rc6a_ not modelled 19.0 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 42 d1uika2 not modelled 19.0 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 43 c3c3vA_ not modelled 18.9 14 PDB header:allergen Chain: A: PDB Molecule:arachin arah3 isoform; PDBTitle: crystal structure of peanut major allergen ara h 3 44 c3cewA_ not modelled 18.5 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 45 d1fxza2 not modelled 18.3 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 46 d1j58a_ not modelled 17.4 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 47 d1od5a2 not modelled 17.2 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 48 d1dlpa1 not modelled 17.1 22 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 49 c2cauA_ not modelled 17.1 9 PDB header:plant protein Chain: A: PDB Molecule:protein (canavalin); PDBTitle: canavalin from jack bean 50 c3k2oB_ not modelled 16.3 30 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 51 c2d40C_ not modelled 16.2 18 PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7 52 c3dwmA_ not modelled 16.1 15 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 53 d1vrba1 not modelled 16.0 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 54 d4croa_ not modelled 16.0 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 55 c2oa2A_ not modelled 15.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution 56 c3mezA_ not modelled 15.4 20 PDB header:sugar binding protein Chain: A: PDB Molecule:mannose-specific lectin 3 chain 1; PDBTitle: x-ray structural analysis of a mannose specific lectin from dutch2 crocus (crocus vernus) 57 c3j09A_ not modelled 15.3 36 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 58 c2q30C_ not modelled 15.1 10 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 59 c2kijA_ not modelled 14.9 28 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a 60 c3cwiA_ not modelled 14.8 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 61 d2phda1 not modelled 14.3 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 62 d1sfna_ not modelled 14.1 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 63 c1fxzC_ not modelled 14.1 14 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 64 c1sefA_ not modelled 14.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 65 d1sefa_ not modelled 14.0 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 66 c2oh2B_ not modelled 13.6 13 PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase 67 d1a6fa_ not modelled 13.1 6 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:RNase P protein 68 d1h9ma1 not modelled 12.9 16 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 69 c2e9qA_ not modelled 12.8 12 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 70 c1uijA_ not modelled 12.7 5 PDB header:sugar binding protein Chain: A: PDB Molecule:beta subunit of beta conglycinin; PDBTitle: crystal structure of soybean beta-conglycinin beta2 homotrimer (i122m/k124w) 71 c1h9mB_ not modelled 12.7 16 PDB header:binding protein Chain: B: PDB Molecule:molybdenum-binding-protein; PDBTitle: two crystal structures of the cytoplasmic molybdate-binding2 protein modg suggest a novel cooperative binding mechanism3 and provide insights into ligand-binding specificity.4 peg-grown form with molybdate bound 72 c1cauB_ not modelled 12.1 15 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 73 c3ehkC_ not modelled 11.9 18 PDB header:plant protein Chain: C: PDB Molecule:prunin; PDBTitle: crystal structure of pru du amandin, an allergenic protein2 from prunus dulcis 74 c2oqkA_ not modelled 11.9 25 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 75 c3kglB_ not modelled 11.9 8 PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus 76 c2vqaC_ not modelled 11.5 12 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca. 77 c3h7yA_ not modelled 11.5 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 78 d1zrra1 not modelled 11.5 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Acireductone dioxygenase 79 c3al6A_ not modelled 11.3 18 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 80 c3kscD_ not modelled 11.3 16 PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l. 81 c1ue7A_ not modelled 11.3 18 PDB header:dna binding protein Chain: A: PDB Molecule:single-strand binding protein; PDBTitle: crystal structure of the single-stranded dna-binding2 protein from mycobacterium tuberculosis 82 c3d82A_ not modelled 11.2 7 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 83 d1guta_ not modelled 11.2 7 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 84 c2pfwB_ not modelled 11.1 21 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution 85 d1h2ka_ not modelled 11.0 30 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 86 c2kl0A_ not modelled 11.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 87 d1d6ta_ not modelled 11.0 12 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:RNase P protein 88 c3uyjA_ not modelled 10.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 89 c2pijB_ not modelled 10.7 22 PDB header:transcription Chain: B: PDB Molecule:prophage pfl 6 cro; PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5 90 d1hr0w_ not modelled 10.7 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 91 d1ah9a_ not modelled 10.7 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 92 c2hj1A_ not modelled 10.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 93 d2hj1a1 not modelled 10.6 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 94 c2i45C_ not modelled 10.6 17 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis 95 d2arca_ not modelled 10.6 21 Fold:Double-stranded beta-helix Superfamily:Regulatory protein AraC Family:Regulatory protein AraC 96 c2opkC_ not modelled 10.6 13 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 97 c2gu9B_ not modelled 10.5 25 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 98 d1hyoa2 not modelled 10.5 14 Fold:FAH Superfamily:FAH Family:FAH 99 c1kskA_ not modelled 10.4 15 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0