Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3kd4A_

Fold library idPDB HeaderMoleculeTitle
c3kd4A_PDB header: hydrolaseChain: A: PDB Molecule: putative protease;PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution


Added to library: Sun Aug 29 03:51:50 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AASEAEYGKVSKAWTLHADGSQEYRSSXELTLFTHTAXNSTYGESFIVYNPDFQTLKIHSSYTRQKDGTI
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)
TTT
TTS

STSGGG
TTT
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VKTPDNAFVEVLPRFAADAPAYNQLKEXVVVHTGLELGATIYLDYSIITKPGYYPALDINERLQETSPVK
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)

GGG

GGGTT
GGGTT


S

TT

TTS
SS



SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ECKVSISVPEGTPLACGLYGSPVKAVEESHDGIKEVHWTLRNIPASSREAFQPKNREASPHLVASTYPSG
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TTS

T




TT





TT

SS
TTS

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence KAALATLDKRLKESQGYESKTFAQFLTDKSGNEQEKVNIIRDHILNNLSTCPIPXAXTGYTVRDIDTVLR
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TTS

SS
SS




GGGGTT



 .........290.........300.........310.........320.........330.........340.........350
Sequence SAYGTPLEIAQLLNVXLNAAGIPSEVLAVYPGHLDTDACGLAAIQTLAVKATVDGKDQYLSASPLTNRGG
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) T
TT

TTS
GGG

STT

TTSSS
GG
 .........360.........370.........380.........390.........400.........410.........420
Sequence LDKVVSLSGTSIEIETTPIQIKESRSVAISADQAKDGFAICVLPAISAGIDSWGXSALNSKRSNLFELPS
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) GTTS







SGGGTTS



SSGGGGSS
TT

S


S

SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LIREEVTYTVTPAEGXKLQTSTQEQVISKPFGKVTRTITPRGNTIEVVRTIELNKQQFTPAEYSDVRSLI
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)

TT

S

S
TTTT

S
 .........500.....
Sequence HEWTNPDNRVLLFSL
Predicted secondary structure




SS confidence














Known secondary structure (DSSP)
GGGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D