Email l.a.kelley@imperial.ac.uk Description P32674 Date Thu Jan 5 11:50:01 GMT 2012 Unique Job ID 1779802ba0ed5d29

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1r9da_ 100.0 42 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 2 c2y8nC_ 100.0 28 PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme 3 c2f3oB_ 100.0 38 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 4 d1h16a_ 100.0 24 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 5 d1qhma_ 100.0 21 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 6 d1hk8a_ 99.4 17 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 7 c1hk8A_ 99.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 8 d1qkra_ 85.3 24 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 9 d1r0ka1 84.4 27 Fold:Left-handed superhelix Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 10 d1q0qa1 83.0 17 Fold:Left-handed superhelix Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11 d1rlra2 73.7 14 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 12 c1r0lD_ 65.5 27 PDB header:oxidoreductase Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph 13 c2eghA_ 61.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin 14 c1xjeA_ 55.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex 15 c1tt9B_ 53.2 11 PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer 16 c3gr1A_ 51.8 10 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 17 c2d2rA_ 50.5 23 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase 18 d1u5tb1 45.2 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 19 d1dq3a4 43.1 14 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 20 d1ueha_ 42.6 9 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 21 d2gykb1 not modelled 41.9 12 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 22 d1jvaa3 not modelled 41.8 11 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 23 c2jcyA_ not modelled 39.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium3 tuberculosis 24 c1jp3A_ not modelled 39.1 11 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase 25 c1k5hB_ not modelled 37.4 17 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose-5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose-5-phosphate reductoisomerase 26 c1rh1A_ not modelled 33.3 11 PDB header:antibiotic Chain: A: PDB Molecule:colicin b; PDBTitle: crystal structure of the cytotoxic bacterial protein2 colicin b at 2.5 a resolution 27 d1st6a7 not modelled 32.3 8 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 28 c3au9A_ not modelled 31.9 14 PDB header:isomerase/isomerase inhibitor Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of the quaternary complex-1 of an isomerase 29 c2vg2C_ not modelled 29.3 17 PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp 30 c3odeA_ not modelled 26.4 18 PDB header:dna binding protein/dna Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: human parp-1 zinc finger 2 (zn2) bound to dna 31 c1v9xA_ not modelled 25.9 16 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase; PDBTitle: solution structure of the first zn-finger domain of2 poly(adp-ribose) polymerase-1 32 d1fi3a_ not modelled 25.6 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 33 c2f40A_ not modelled 25.4 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pf1455; PDBTitle: structure of a novel protein from backbone-centered nmr data and nmr-2 assisted structure prediction 34 d1f75a_ not modelled 23.4 16 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 35 d1nh2a2 not modelled 22.7 29 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 36 c3gr0D_ not modelled 22.6 12 PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362) 37 c3thgA_ not modelled 22.5 29 PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain 38 c3ajfA_ not modelled 21.6 27 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus 39 c2dmjA_ not modelled 21.6 11 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 1; PDBTitle: solution structure of the first zf-parp domain of human2 poly(adp-ribose)polymerase-1 40 d1mp9a1 not modelled 21.5 29 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 41 d1nh2a1 not modelled 21.4 25 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 42 d1l1la_ not modelled 21.3 19 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:B12-dependent (class II) ribonucleotide reductase 43 d1qnaa2 not modelled 21.2 29 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 44 d1aisa1 not modelled 20.9 18 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 45 d1vioa2 not modelled 20.9 12 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 46 d1rlfa_ not modelled 20.3 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 47 d1aisa2 not modelled 20.0 29 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 48 d1pugb_ not modelled 19.6 26 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 49 d1qnaa1 not modelled 19.5 21 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 50 d1v5ra1 not modelled 18.9 44 Fold:N domain of copper amine oxidase-like Superfamily:GAS2 domain-like Family:GAS2 domain 51 d2i15a1 not modelled 18.7 30 Fold:MG296-like Superfamily:MG296-like Family:MG296-like 52 c1fuiB_ not modelled 18.6 21 PDB header:isomerase Chain: B: PDB Molecule:l-fucose isomerase; PDBTitle: l-fucose isomerase from escherichia coli 53 c2cvuA_ not modelled 18.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i 54 d1mp9a2 not modelled 18.2 29 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 55 c3hnfA_ not modelled 17.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp 56 c3mf2B_ not modelled 17.5 17 PDB header:ligase Chain: B: PDB Molecule:bll0957 protein; PDBTitle: crystal structure of class ii aars homologue (bll0957) complexed with2 amp 57 d351ca_ not modelled 17.3 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 58 d2g39a2 not modelled 17.2 23 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 59 d1cdwa1 not modelled 17.0 25 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 60 c3inpA_ not modelled 17.0 22 PDB header:isomerase Chain: A: PDB Molecule:d-ribulose-phosphate 3-epimerase; PDBTitle: 2.05 angstrom resolution crystal structure of d-ribulose-phosphate 3-2 epimerase from francisella tularensis. 61 d1lfda_ not modelled 16.7 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 62 d2bm3a1 not modelled 16.2 29 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 63 c3kh0A_ not modelled 16.2 22 PDB header:signaling protein Chain: A: PDB Molecule:ral guanine nucleotide dissociation stimulator; PDBTitle: crystal structure of the ras-association (ra) domain of2 ralgds 64 d1tyja1 not modelled 15.6 29 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 65 d1uj8a1 not modelled 15.5 24 Fold:Another 3-helical bundle Superfamily:IscX-like Family:IscX-like 66 c2b59A_ not modelled 15.5 29 PDB header:hydrolase/structural protein Chain: A: PDB Molecule:cog1196: chromosome segregation atpases; PDBTitle: the type ii cohesin dockerin complex 67 c2cs2A_ not modelled 15.4 18 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1; PDBTitle: solution structure of the second zn-finger domain of2 poly(adp-ribose) polymerase-1 68 c3hp7A_ not modelled 15.3 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 69 d1cdwa2 not modelled 15.1 21 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 70 c3rmrA_ not modelled 15.0 23 PDB header:protein binding Chain: A: PDB Molecule:avirulence protein; PDBTitle: crystal structure of hyaloperonospora arabidopsidis atr1 effector2 domain 71 c2jobA_ not modelled 15.0 15 PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site 72 c3ugsB_ not modelled 14.9 11 PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni 73 d1ynra1 not modelled 14.9 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 74 d1rypi_ not modelled 14.8 19 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 75 c3ol0C_ not modelled 14.6 17 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly 76 d2rgfa_ not modelled 14.5 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 77 c3fnkA_ not modelled 14.5 36 PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: crystal structure of the second type ii cohesin module from2 the cellulosomal adaptor scaa scaffoldin of acetivibrio3 cellulolyticus 78 c3ghpA_ not modelled 14.4 36 PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: structure of the second type ii cohesin module from the2 adaptor scaa scaffoldin of acetivibrio cellulolyticus3 (including long c-terminal linker) 79 d1q5qh_ not modelled 14.0 6 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 80 c3oryA_ not modelled 14.0 19 PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus 81 d1lghb_ not modelled 14.0 5 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 82 c2wghA_ not modelled 14.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg. 83 c2vpmB_ not modelled 13.9 17 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 84 d1irxa1 not modelled 13.9 14 Fold:An anticodon-binding domain of class I aminoacyl-tRNA synthetases Superfamily:An anticodon-binding domain of class I aminoacyl-tRNA synthetases Family:C-terminal domain of class I lysyl-tRNA synthetase 85 d1yuaa2 not modelled 13.8 56 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment 86 d1zv9a1 not modelled 13.5 50 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 87 d1twda_ not modelled 13.5 26 Fold:TIM beta/alpha-barrel Superfamily:CutC-like Family:CutC-like 88 d1nj1a3 not modelled 13.5 15 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 89 c2qguA_ not modelled 13.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 90 c3nzwH_ not modelled 13.0 19 PDB header:hydrolase/hydrolase inhibitor Chain: H: PDB Molecule:proteasome component pup1; PDBTitle: crystal structure of the yeast 20s proteasome in complex with 2b 91 d1xppa_ not modelled 12.9 10 Fold:DCoH-like Superfamily:RBP11-like subunits of RNA polymerase Family:RBP11/RpoL 92 c2kwvA_ not modelled 12.6 36 PDB header:protein binding/signaling protein Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution structure of ubm1 of murine polymerase iota in complex with2 ubiquitin 93 c3eagA_ not modelled 12.6 14 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso- PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides 94 d1i36a1 not modelled 12.5 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Conserved hypothetical protein MTH1747 95 c3a14B_ not modelled 12.1 27 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph 96 d1w7pd1 not modelled 12.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 97 d1zsqa2 not modelled 12.0 18 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Myotubularin-like phosphatases 98 d1seda_ not modelled 12.0 9 Fold:Hypothetical protein YhaI Superfamily:Hypothetical protein YhaI Family:Hypothetical protein YhaI 99 c2hx6A_ not modelled 11.9 38 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb