Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	S	E	I	S	K	K	D	I	T	R	L	G	F	R	S	S	L	L	Q	A	S	F	N	Y	E	R	M	Q	A	G	G	F	T	W	A	M	L	P	I	L	K	K	I	Y	K	D	D	K	P	G	L	S	A	A	M	K	D	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	E	F	I	N	T	H	P	N	L	V	G	F	L	M	G	L	L	I	S	M	E	E	K	G	E	N	R	D	T	I	K	G	L	K	V	A	L	F	G	P	I	A	G	I	G	D	A	I	F	W	F	T	L	L	P	I	M	A	G
Secondary structure
SS confidence
Disorder																									?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	C	S	S	F	A	S	Q	G	N	L	L	G	P	I	L	F	F	A	V	Y	L	L	I	F	F	L	R	V	G	W	T	H	V	G	Y	S	V	G	V	K	A	I	D	K	V	R	E	N	S	Q	M	I	A	R	S	A	T	I	L
Secondary structure
SS confidence
Disorder																																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	I	T	V	I	G	G	L	I	A	S	Y	V	H	I	N	V	V	T	S	F	A	I	D	N	T	H	S	V	A	L	Q	Q	D	F	F	D	K	V	F	P	N	I	L	P	M	A	Y	T	L	L	M	Y	Y	F	L	R	V	K	K
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Sequence		A	H	P	V	L	L	I	G	V	T	F	V	L	S	I	V	C	S	A	F	G	I	L
Secondary structure
SS confidence
Disorder																						?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2dmw chain A Region: 25 - 69 Aligned: 45 Modelled: 45 Confidence: 42.3% Identity: 18% PDB header:membrane protein Chain: A: PDB Molecule:synaptobrevin-like 1 variant; PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1 Phyre2 PDB 2jtt chain D Region: 37 - 59 Aligned: 23 Modelled: 23 Confidence: 19.0% Identity: 26% PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein Phyre2 PDB 1ljr chain A domain 1 Region: 43 - 105 Aligned: 63 Modelled: 63 Confidence: 18.2% Identity: 6% Fold: GST C-terminal domain-like Superfamily: GST C-terminal domain-like Family: Glutathione S-transferase (GST), C-terminal domain Phyre2 PDB 3aqp chain B Region: 219 - 256 Aligned: 37 Modelled: 38 Confidence: 17.7% Identity: 11% PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus Phyre2 PDB 3ctv chain A Region: 65 - 125 Aligned: 60 Modelled: 61 Confidence: 16.9% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyacyl-coa dehydrogenase; PDBTitle: crystal structure of central domain of 3-hydroxyacyl-coa2 dehydrogenase from archaeoglobus fulgidus Phyre2 PDB 1l2a chain D Region: 22 - 64 Aligned: 43 Modelled: 43 Confidence: 16.6% Identity: 21% PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome Phyre2 PDB 1l1y chain A Region: 22 - 64 Aligned: 43 Modelled: 43 Confidence: 16.6% Identity: 21% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 1iyx chain A domain 2 Region: 38 - 81 Aligned: 44 Modelled: 44 Confidence: 16.2% Identity: 14% Fold: Enolase N-terminal domain-like Superfamily: Enolase N-terminal domain-like Family: Enolase N-terminal domain-like Phyre2 PDB 1t3q chain A domain 1 Region: 10 - 61 Aligned: 47 Modelled: 52 Confidence: 13.8% Identity: 21% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1g9g chain A Region: 22 - 64 Aligned: 43 Modelled: 43 Confidence: 13.4% Identity: 16% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 3bd0 chain D Region: 44 - 62 Aligned: 19 Modelled: 19 Confidence: 12.9% Identity: 26% PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii Phyre2 PDB 2i4r chain A domain 1 Region: 87 - 109 Aligned: 17 Modelled: 23 Confidence: 12.3% Identity: 35% Fold: AtpF-like Superfamily: AtpF-like Family: AtpF-like Phyre2 PDB 1x1j chain A Region: 26 - 69 Aligned: 40 Modelled: 44 Confidence: 12.2% Identity: 18% PDB header:lyase Chain: A: PDB Molecule:xanthan lyase; PDBTitle: crystal structure of xanthan lyase (n194a) with a substrate. Phyre2 PDB 1oai chain A Region: 10 - 28 Aligned: 19 Modelled: 19 Confidence: 12.1% Identity: 16% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TAP-C domain-like Phyre2 PDB 3htk chain B Region: 35 - 74 Aligned: 39 Modelled: 40 Confidence: 11.5% Identity: 15% PDB header:recombination/replication/ligase Chain: B: PDB Molecule:structural maintenance of chromosomes protein 5; PDBTitle: crystal structure of mms21 and smc5 complex Phyre2 PDB 1zro chain B Region: 50 - 110 Aligned: 61 Modelled: 61 Confidence: 11.2% Identity: 15% PDB header:cell invasion Chain: B: PDB Molecule:erythrocyte binding antigen region ii; PDBTitle: crystal structure of eba-175 region ii (rii) crystallized2 in the presence of (alpha)2,3-sialyllactose Phyre2 PDB 1v97 chain A domain 1 Region: 10 - 61 Aligned: 47 Modelled: 52 Confidence: 11.1% Identity: 19% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1rm6 chain C domain 1 Region: 9 - 61 Aligned: 48 Modelled: 53 Confidence: 11.1% Identity: 21% Fold: CO dehydrogenase ISP C-domain like Superfamily: CO dehydrogenase ISP C-domain like Family: CO dehydrogenase ISP C-domain like Phyre2 PDB 1s29 chain A Region: 50 - 64 Aligned: 15 Modelled: 15 Confidence: 10.0% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: La domain Phyre2 PDB 1x1i chain A domain 1 Region: 26 - 69 Aligned: 40 Modelled: 44 Confidence: 9.5% Identity: 18% Fold: alpha/alpha toroid Superfamily: Chondroitin AC/alginate lyase Family: Hyaluronate lyase-like catalytic, N-terminal domain Phyre2 1 c2dmwA_ 2 c2jttD_ 3 d1ljra1 4 c3aqpB_ 5 c3ctvA_ 6 c1l2aD_ 7 d1l1ya_ 8 d1iyxa2 9 d1t3qa1 10 d1g9ga_ 11 c3bd0D_ 12 d2i4ra1 13 c1x1jA_ 14 d1oaia_ 15 c3htkB_ 16 c1zroB_ 17 d1v97a1 18 d1rm6c1 19 d1s29a_ 20 d1x1ia1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2dmwA_ 42.3 18 PDB header:membrane protein Chain: A: PDB Molecule:synaptobrevin-like 1 variant; PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1 2 c2jttD_ 19.0 26 PDB header:calcium binding protein/antitumor protei Chain: D: PDB Molecule:calcyclin-binding protein; PDBTitle: solution structure of calcium loaded s100a6 bound to c-2 terminal siah-1 interacting protein 3 d1ljra1 18.2 6 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 4 c3aqpB_ 17.7 11 PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus 5 c3ctvA_ 16.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyacyl-coa dehydrogenase; PDBTitle: crystal structure of central domain of 3-hydroxyacyl-coa2 dehydrogenase from archaeoglobus fulgidus 6 c1l2aD_ 16.6 21 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 7 d1l1ya_ 16.6 21 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 8 d1iyxa2 16.2 14 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 9 d1t3qa1 13.8 21 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 10 d1g9ga_ 13.4 16 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 11 c3bd0D_ 12.9 26 PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii 12 d2i4ra1 12.3 35 Fold:AtpF-like Superfamily:AtpF-like Family:AtpF-like 13 c1x1jA_ 12.2 18 PDB header:lyase Chain: A: PDB Molecule:xanthan lyase; PDBTitle: crystal structure of xanthan lyase (n194a) with a substrate. 14 d1oaia_ 12.1 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 15 c3htkB_ 11.5 15 PDB header:recombination/replication/ligase Chain: B: PDB Molecule:structural maintenance of chromosomes protein 5; PDBTitle: crystal structure of mms21 and smc5 complex 16 c1zroB_ 11.2 15 PDB header:cell invasion Chain: B: PDB Molecule:erythrocyte binding antigen region ii; PDBTitle: crystal structure of eba-175 region ii (rii) crystallized2 in the presence of (alpha)2,3-sialyllactose 17 d1v97a1 11.1 19 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 18 d1rm6c1 11.1 21 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 19 d1s29a_ 10.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 20 d1x1ia1 9.5 18 Fold:alpha/alpha toroid Superfamily:Chondroitin AC/alginate lyase Family:Hyaluronate lyase-like catalytic, N-terminal domain 21 c2cfhD_ not modelled 9.5 16 PDB header:transport Chain: D: PDB Molecule:trafficking protein particle complex subunit 6b; PDBTitle: structure of the bet3-tpc6b core of trapp 22 d2cqka1 not modelled 9.4 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 23 d1ffva1 not modelled 9.2 17 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 24 c2j96B_ not modelled 9.1 11 PDB header:photosynthesis Chain: B: PDB Molecule:phycoerythrocyanin alpha chain; PDBTitle: the e-configuration of alfa-phycoerythrocyanin 25 d1j2za_ not modelled 8.9 19 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 26 d1k3ra2 not modelled 8.5 35 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 27 d1cb8a1 not modelled 8.4 9 Fold:alpha/alpha toroid Superfamily:Chondroitin AC/alginate lyase Family:Hyaluronate lyase-like catalytic, N-terminal domain 28 c2vh3B_ not modelled 8.4 24 PDB header:unknown function Chain: B: PDB Molecule:ranasmurfin; PDBTitle: ranasmurfin 29 d1w6ta2 not modelled 8.4 14 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 30 c3cloC_ not modelled 8.0 10 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution 31 c2kdtA_ not modelled 7.9 50 PDB header:protein transport Chain: A: PDB Molecule:neuroendocrine convertase 1; PDBTitle: pc1/3 dcsg sorting domain structure in dpc 32 c1cb8A_ not modelled 7.9 5 PDB header:lyase Chain: A: PDB Molecule:protein (chondroitinase ac); PDBTitle: chondroitinase ac lyase from flavobacterium heparinum 33 c2rrfA_ not modelled 7.8 35 PDB header:unknown function Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 21; PDBTitle: the solution structure of the c-terminal region of zinc finger fyve2 domain-containing protein 21 34 d1zxia1 not modelled 7.4 13 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 35 d1n62a1 not modelled 7.3 13 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 36 c1t3qD_ not modelled 7.3 21 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 37 c2jp7A_ not modelled 7.0 21 PDB header:translation Chain: A: PDB Molecule:mrna export factor mex67; PDBTitle: nmr structure of the mex67 uba domain 38 d2j0wa3 not modelled 7.0 0 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 39 d1go5a_ not modelled 7.0 20 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 40 c1q0wA_ not modelled 6.9 30 PDB header:transport protein Chain: A: PDB Molecule:vacuolar protein sorting-associated protein PDBTitle: solution structure of vps27 amino-terminal uim-ubiquitin2 complex 41 c1bm4A_ not modelled 6.8 15 PDB header:viral protein Chain: A: PDB Molecule:protein (moloney murine leukemia virus capsid); PDBTitle: momlv capsid protein major homology region peptide analog 42 c3hrdH_ not modelled 6.8 17 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 43 c1rm6F_ not modelled 6.8 21 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 44 d3hdha1 not modelled 6.6 20 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:HCDH C-domain-like 45 c1yx5A_ not modelled 6.5 23 PDB header:hydrolase Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4; PDBTitle: solution structure of s5a uim-1/ubiquitin complex 46 d1jroa1 not modelled 6.2 19 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 47 c3c9pA_ not modelled 6.0 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917 48 d1f0ya1 not modelled 6.0 23 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:HCDH C-domain-like 49 c3n8bB_ not modelled 6.0 9 PDB header:nucleic acid binding protein Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 50 c3snhA_ not modelled 6.0 30 PDB header:endocytosis Chain: A: PDB Molecule:dynamin-1; PDBTitle: crystal structure of nucleotide-free human dynamin1 51 c3zvrA_ not modelled 6.0 30 PDB header:hydrolase Chain: A: PDB Molecule:dynamin-1; PDBTitle: crystal structure of dynamin 52 c3pf6C_ not modelled 5.9 22 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein pp-luz7_gp033; PDBTitle: the structure of uncharacterized protein pp-luz7_gp033 from2 pseudomonas phage luz7. 53 d2h8aa1 not modelled 5.9 9 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 54 d1r2za1 not modelled 5.8 36 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 55 d1q33a_ not modelled 5.7 8 Fold:Nudix Superfamily:Nudix Family:MutT-like 56 c3fseB_ not modelled 5.6 20 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 57 c3nm7D_ not modelled 5.6 9 PDB header:nucleic acid binding protein Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of borrelia burgdorferi pur-alpha 58 d1dq3a2 not modelled 5.6 14 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:PI-Pfui intein middle domain 59 d1u7ka_ not modelled 5.6 26 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 60 c3juiA_ not modelled 5.6 14 PDB header:translation Chain: A: PDB Molecule:translation initiation factor eif-2b subunit epsilon; PDBTitle: crystal structure of the c-terminal domain of human translation2 initiation factor eif2b epsilon subunit 61 c1bb1B_ not modelled 5.5 21 PDB header:de novo protein design Chain: B: PDB Molecule:designed, thermostable heterotrimeric coiled PDBTitle: crystal structure of a designed, thermostable2 heterotrimeric coiled coil 62 d1utga_ not modelled 5.5 9 Fold:Uteroglobin-like Superfamily:Uteroglobin-like Family:Uteroglobin-like 63 d1jqna_ not modelled 5.4 20 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 64 d2gena2 not modelled 5.4 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 65 d1l2la_ not modelled 5.4 43 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 66 d1zh5a1 not modelled 5.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 67 d1ee8a1 not modelled 5.3 43 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 68 d1su3a1 not modelled 5.3 26 Fold:PGBD-like Superfamily:PGBD-like Family:MMP N-terminal domain 69 c1ffuA_ not modelled 5.3 17 PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 70 c3b9jI_ not modelled 5.2 19 PDB header:oxidoreductase Chain: I: PDB Molecule:xanthine oxidase; PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine 71 c2bbjB_ not modelled 5.2 17 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 72 c1k3rA_ not modelled 5.2 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 73 d1hh4e_ not modelled 5.2 28 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like 74 d1seda_ not modelled 5.1 12 Fold:Hypothetical protein YhaI Superfamily:Hypothetical protein YhaI Family:Hypothetical protein YhaI

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0