Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	I	E	C	A	C	N	F	L	M	D	K	D	A	Q	G	Y	I	D	L	S	D	L	D	L	T	S	C	H	F	K	G	D	V	I	S	K	V	S	F	L	S	S	N	L	Q	H	V	T	F	E	C	K	E	I	G	D	C
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	F	T	T	A	I	V	D	N	V	I	F	R	C	R	R	L	H	N	V	I	F	I	K	A	S	G	E	C	V	D	F	S	K	N	I	L	D	T	V	D	F	S	Q	S	Q	L	G	H	S	N	F	R	E	C	Q	I	R	N	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	F	D	N	C	Y	L	Y	A	S	H	F	T	R	A	E	F	L	S	A	K	E	I	S	F	I	K	S	N	L	T	A	V	M	F	D	Y	V	R	M	S	T	G	N	F	K	D	C	I	T	E	Q	L	E	L	T	I	D	Y	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	I	F	W	N	E	D	L	D	G	Y	I	N	N	I	I	K	M	I	D	T	L	P	D	N	A	M	I	L	K	S	V	L	A	V	K	L	V	M	Q	L	K	I	L	N	I	V	N	K	N	F	I	E	N	M	K	K	I	F	S
Secondary structure
SS confidence
Disorder																								?					?																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		H	C	P	Y	I	K	D	P	I	I	R	S	Y	I	H	S	D	E	D	N	K	F	D	D	F	M	R	Q	H	R	F	S	E	V	N	F	D	T	Q	Q	M	I	D	F	I	N	R	F	N	T	N	K	W	L	I	D	K	N	N	N
Secondary structure
SS confidence
Disorder																													?	?	?	?	?	?	?	?	?	?	?	?	?		?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	F	I	Q	L	I	D	Q	A	L	R	S	T	D	D	M	I	K	A	N	V	W	H	L	Y	K	E	W	I	R	S	D	D	V	S	P	I	F	I	E	T	E	D	N	L	R	T	F	N	T	N	E	L	T	R	N	D	N	I	F
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?																																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	L	F	S	S	V	D	D	G	P	V	M	V	V	S	S	Q	R	L	H	D	M	L	N	P	T	K	D	T	N	W	N	S	T	Y	I	Y	K	S	R	H	E	M	L	P	V	N	L	T	Q	E	T	L	F	S	S	K	S	H	G
Secondary structure
SS confidence
Disorder									?	?																															?		?	?	?	?	?												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Sequence		K	Y	A	L	F	P	I	F	T	A	S	W	R	A	H	R	I	M	N	K	G	V
Secondary structure
SS confidence
Disorder																	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3nb2 chain B Region: 9 - 433 Aligned: 410 Modelled: 419 Confidence: 100.0% Identity: 20% PDB header:ligase Chain: B: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of e. coli o157:h7 effector protein nlel Phyre2 PDB 2qza chain A Region: 36 - 433 Aligned: 384 Modelled: 393 Confidence: 100.0% Identity: 17% PDB header:ligase Chain: A: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of salmonella effector protein sopa Phyre2 PDB 3du1 chain X Region: 11 - 175 Aligned: 162 Modelled: 165 Confidence: 99.9% Identity: 13% PDB header:structural protein Chain: X: PDB Molecule:all3740 protein; PDBTitle: the 2.0 angstrom resolution crystal structure of hetl, a pentapeptide2 repeat protein involved in heterocyst differentiation regulation from3 the cyanobacterium nostoc sp. strain pcc 7120 Phyre2 PDB 2o6w chain A Region: 21 - 167 Aligned: 143 Modelled: 144 Confidence: 99.9% Identity: 15% PDB header:unknown function Chain: A: PDB Molecule:repeat five residue (rfr) protein or PDBTitle: crystal structure of a pentapeptide repeat protein (rfr23)2 from the cyanobacterium cyanothece 51142 Phyre2 PDB 2xt4 chain B Region: 12 - 180 Aligned: 166 Modelled: 169 Confidence: 99.9% Identity: 19% PDB header:cell cycle Chain: B: PDB Molecule:mcbg-like protein; PDBTitle: structure of the pentapeptide repeat protein albg, a2 resistance factor for the topoisomerase poison albicidin. Phyre2 PDB 3pss chain B Region: 17 - 178 Aligned: 159 Modelled: 162 Confidence: 99.9% Identity: 11% PDB header:cell cycle Chain: B: PDB Molecule:qnr; PDBTitle: crystal structure of ahqnr, the qnr protein from aeromonas hydrophila2 (p21 crystal form) Phyre2 PDB 2j8k chain A domain 1 Region: 11 - 176 Aligned: 166 Modelled: 166 Confidence: 99.9% Identity: 17% Fold: Single-stranded right-handed beta-helix Superfamily: Pentapeptide repeat-like Family: Pentapeptide repeats Phyre2 PDB 2j8k chain A Region: 11 - 176 Aligned: 166 Modelled: 166 Confidence: 99.9% Identity: 17% PDB header:toxin Chain: A: PDB Molecule:np275-np276; PDBTitle: structure of the fusion of np275 and np276, pentapeptide2 repeat proteins from nostoc punctiforme Phyre2 PDB 2w7z chain B Region: 20 - 176 Aligned: 156 Modelled: 157 Confidence: 99.8% Identity: 16% PDB header:inhibitor Chain: B: PDB Molecule:pentapeptide repeat family protein; PDBTitle: structure of the pentapeptide repeat protein efsqnr, a dna2 gyrase inhibitor. free amines modified by cyclic3 pentylation with glutaraldehyde. Phyre2 PDB 2xtw chain B Region: 20 - 172 Aligned: 150 Modelled: 153 Confidence: 99.8% Identity: 15% PDB header:cell cycle Chain: B: PDB Molecule:qnrb1; PDBTitle: structure of qnrb1 (full length), a plasmid-mediated2 fluoroquinolone resistance protein Phyre2 PDB 2xt4 chain A Region: 17 - 176 Aligned: 157 Modelled: 160 Confidence: 99.8% Identity: 14% PDB header:cell cycle Chain: A: PDB Molecule:mcbg-like protein; PDBTitle: structure of the pentapeptide repeat protein albg, a2 resistance factor for the topoisomerase poison albicidin. Phyre2 PDB 3n90 chain A Region: 17 - 165 Aligned: 142 Modelled: 149 Confidence: 99.8% Identity: 12% PDB header:unknown function Chain: A: PDB Molecule:thylakoid lumenal 15 kda protein 1, chloroplastic; PDBTitle: the 1.7 angstrom resolution crystal structure of at2g44920, a2 pentapeptide repeat protein from arabidopsis thaliana thylakoid3 lumen. Phyre2 PDB 2g0y chain A Region: 29 - 166 Aligned: 132 Modelled: 138 Confidence: 99.8% Identity: 11% PDB header:unknown function Chain: A: PDB Molecule:pentapeptide repeat protein; PDBTitle: crystal structure of a lumenal pentapeptide repeat protein from2 cyanothece sp 51142 at 2.3 angstrom resolution. tetragonal crystal3 form Phyre2 PDB 2bm5 chain A domain 1 Region: 17 - 176 Aligned: 160 Modelled: 160 Confidence: 99.8% Identity: 9% Fold: Single-stranded right-handed beta-helix Superfamily: Pentapeptide repeat-like Family: Pentapeptide repeats Phyre2 PDB 2f3l chain A domain 1 Region: 30 - 166 Aligned: 131 Modelled: 137 Confidence: 99.8% Identity: 11% Fold: Single-stranded right-handed beta-helix Superfamily: Pentapeptide repeat-like Family: Pentapeptide repeats Phyre2 PDB 2j8i chain B Region: 25 - 137 Aligned: 113 Modelled: 113 Confidence: 99.8% Identity: 15% PDB header:toxin Chain: B: PDB Molecule:np275; PDBTitle: structure of np275, a pentapeptide repeat protein from2 nostoc punctiforme Phyre2 PDB 2j8i chain A domain 1 Region: 22 - 113 Aligned: 92 Modelled: 92 Confidence: 99.5% Identity: 14% Fold: Single-stranded right-handed beta-helix Superfamily: Pentapeptide repeat-like Family: Pentapeptide repeats Phyre2 PDB 3etv chain A Region: 291 - 383 Aligned: 87 Modelled: 93 Confidence: 78.7% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:protein transport protein tip20,linker,protein PDBTitle: crystal structure of a tip20p-dsl1p fusion protein Phyre2 PDB 3bux chain B domain 2 Region: 201 - 261 Aligned: 53 Modelled: 61 Confidence: 52.8% Identity: 13% Fold: N-cbl like Superfamily: N-terminal domain of cbl (N-cbl) Family: N-terminal domain of cbl (N-cbl) Phyre2 PDB 3bun chain B Region: 201 - 261 Aligned: 53 Modelled: 61 Confidence: 47.1% Identity: 13% PDB header:ligase/signaling protein Chain: B: PDB Molecule:e3 ubiquitin-protein ligase cbl; PDBTitle: crystal structure of c-cbl-tkb domain complexed with its2 binding motif in sprouty4 Phyre2 1 c3nb2B_ 2 c2qzaA_ 3 c3du1X_ 4 c2o6wA_ 5 c2xt4B_ 6 c3pssB_ 7 d2j8ka1 8 c2j8kA_ 9 c2w7zB_ 10 c2xtwB_ 11 c2xt4A_ 12 c3n90A_ 13 c2g0yA_ 14 d2bm5a1 15 d2f3la1 16 c2j8iB_ 17 d2j8ia1 18 c3etvA_ 19 d3buxb2 20 c3bunB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nb2B_ 100.0 20 PDB header:ligase Chain: B: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of e. coli o157:h7 effector protein nlel 2 c2qzaA_ 100.0 17 PDB header:ligase Chain: A: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of salmonella effector protein sopa 3 c3du1X_ 99.9 13 PDB header:structural protein Chain: X: PDB Molecule:all3740 protein; PDBTitle: the 2.0 angstrom resolution crystal structure of hetl, a pentapeptide2 repeat protein involved in heterocyst differentiation regulation from3 the cyanobacterium nostoc sp. strain pcc 7120 4 c2o6wA_ 99.9 15 PDB header:unknown function Chain: A: PDB Molecule:repeat five residue (rfr) protein or PDBTitle: crystal structure of a pentapeptide repeat protein (rfr23)2 from the cyanobacterium cyanothece 51142 5 c2xt4B_ 99.9 19 PDB header:cell cycle Chain: B: PDB Molecule:mcbg-like protein; PDBTitle: structure of the pentapeptide repeat protein albg, a2 resistance factor for the topoisomerase poison albicidin. 6 c3pssB_ 99.9 11 PDB header:cell cycle Chain: B: PDB Molecule:qnr; PDBTitle: crystal structure of ahqnr, the qnr protein from aeromonas hydrophila2 (p21 crystal form) 7 d2j8ka1 99.9 17 Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats 8 c2j8kA_ 99.9 17 PDB header:toxin Chain: A: PDB Molecule:np275-np276; PDBTitle: structure of the fusion of np275 and np276, pentapeptide2 repeat proteins from nostoc punctiforme 9 c2w7zB_ 99.8 16 PDB header:inhibitor Chain: B: PDB Molecule:pentapeptide repeat family protein; PDBTitle: structure of the pentapeptide repeat protein efsqnr, a dna2 gyrase inhibitor. free amines modified by cyclic3 pentylation with glutaraldehyde. 10 c2xtwB_ 99.8 15 PDB header:cell cycle Chain: B: PDB Molecule:qnrb1; PDBTitle: structure of qnrb1 (full length), a plasmid-mediated2 fluoroquinolone resistance protein 11 c2xt4A_ 99.8 14 PDB header:cell cycle Chain: A: PDB Molecule:mcbg-like protein; PDBTitle: structure of the pentapeptide repeat protein albg, a2 resistance factor for the topoisomerase poison albicidin. 12 c3n90A_ 99.8 12 PDB header:unknown function Chain: A: PDB Molecule:thylakoid lumenal 15 kda protein 1, chloroplastic; PDBTitle: the 1.7 angstrom resolution crystal structure of at2g44920, a2 pentapeptide repeat protein from arabidopsis thaliana thylakoid3 lumen. 13 c2g0yA_ 99.8 11 PDB header:unknown function Chain: A: PDB Molecule:pentapeptide repeat protein; PDBTitle: crystal structure of a lumenal pentapeptide repeat protein from2 cyanothece sp 51142 at 2.3 angstrom resolution. tetragonal crystal3 form 14 d2bm5a1 99.8 9 Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats 15 d2f3la1 99.8 11 Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats 16 c2j8iB_ 99.8 15 PDB header:toxin Chain: B: PDB Molecule:np275; PDBTitle: structure of np275, a pentapeptide repeat protein from2 nostoc punctiforme 17 d2j8ia1 99.5 14 Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats 18 c3etvA_ 78.7 15 PDB header:transport protein Chain: A: PDB Molecule:protein transport protein tip20,linker,protein PDBTitle: crystal structure of a tip20p-dsl1p fusion protein 19 d3buxb2 52.8 13 Fold:N-cbl like Superfamily:N-terminal domain of cbl (N-cbl) Family:N-terminal domain of cbl (N-cbl) 20 c3bunB_ 47.1 13 PDB header:ligase/signaling protein Chain: B: PDB Molecule:e3 ubiquitin-protein ligase cbl; PDBTitle: crystal structure of c-cbl-tkb domain complexed with its2 binding motif in sprouty4 21 c2cblA_ not modelled 42.8 13 PDB header:complex (proto-oncogene/peptide) Chain: A: PDB Molecule:proto-oncogene cbl; PDBTitle: n-terminal domain of cbl in complex with its binding site2 on zap-70 22 d1td6a_ not modelled 39.9 16 Fold:Hypothetical protein MPN330 Superfamily:Hypothetical protein MPN330 Family:Hypothetical protein MPN330 23 d1h8ba_ not modelled 37.4 19 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 24 c3ddrC_ not modelled 36.0 11 PDB header:membrane protein/heme binding protein Chain: C: PDB Molecule:hemophore hasa; PDBTitle: structure of the serratia marcescens hemophore receptor hasr-ile671gly2 mutant in complex with its hemophore hasa and heme 25 c1fbvA_ not modelled 35.1 13 PDB header:ligase Chain: A: PDB Molecule:signal transduction protein cbl; PDBTitle: structure of a cbl-ubch7 complex: ring domain function in2 ubiquitin-protein ligases 26 d1dlya_ not modelled 33.4 22 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 27 c1dlyA_ not modelled 33.4 22 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin; PDBTitle: x-ray crystal structure of hemoglobin from the green2 unicellular alga chlamydomonas eugametos 28 d1idra_ not modelled 30.7 23 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 29 c2kscA_ not modelled 28.9 16 PDB header:unknown function Chain: A: PDB Molecule:cyanoglobin; PDBTitle: solution structure of synechococcus sp. pcc 7002 hemoglobin 30 d1dk0a_ not modelled 26.9 12 Fold:Heme-binding protein A (HasA) Superfamily:Heme-binding protein A (HasA) Family:Heme-binding protein A (HasA) 31 c3aq8A_ not modelled 25.6 26 PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form 32 d1s69a_ not modelled 23.4 13 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 33 d1m8na_ not modelled 23.3 11 Fold:Single-stranded left-handed beta-helix Superfamily:An insect antifreeze protein Family:An insect antifreeze protein 34 d1dlwa_ not modelled 21.5 13 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 35 d1ngka_ not modelled 20.6 13 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 36 c3op0B_ not modelled 17.2 8 PDB header:signaling protein/signaling protein regu Chain: B: PDB Molecule:signal transduction protein cbl-c; PDBTitle: crystal structure of cbl-c (cbl-3) tkb domain in complex with egfr2 py1069 peptide 37 c1z9eA_ not modelled 16.0 11 PDB header:protein binding/transcription Chain: A: PDB Molecule:pc4 and sfrs1 interacting protein 2; PDBTitle: solution structure of the hiv-1 integrase-binding domain in2 ledgf/p75 38 d1ogmx2 not modelled 15.1 18 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Dextranase, catalytic domain 39 d2b4jc1 not modelled 15.0 11 Fold:N-cbl like Superfamily:HIV integrase-binding domain Family:HIV integrase-binding domain 40 d1fqia_ not modelled 14.1 14 Fold:Regulator of G-protein signaling, RGS Superfamily:Regulator of G-protein signaling, RGS Family:Regulator of G-protein signaling, RGS 41 c2crpA_ not modelled 12.3 13 PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signaling 5; PDBTitle: solution structure of the rgs domain of regulator of g-2 protein signalling 5 (rgs 5) 42 c2p90B_ not modelled 11.8 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein cgl1923; PDBTitle: the crystal structure of a protein of unknown function from2 corynebacterium glutamicum atcc 13032 43 d1ko7a1 not modelled 11.5 20 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 44 c2bmmA_ not modelled 11.3 9 PDB header:oxygen storage/transport Chain: A: PDB Molecule:thermostable hemoglobin from thermobifida fusca; PDBTitle: x-ray structure of a novel thermostable hemoglobin from the2 actinobacterium thermobifida fusca 45 c2gtpD_ not modelled 10.4 19 PDB header:signaling protein Chain: D: PDB Molecule:regulator of g-protein signaling 1; PDBTitle: crystal structure of the heterodimeric complex of human rgs1 and2 activated gi alpha 1 46 c2pbiA_ not modelled 10.0 13 PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signaling 9; PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure 47 c2d9jA_ not modelled 8.7 13 PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signalling 7; PDBTitle: solution structure of the rgs domain of regulator of g-2 protein signaling 7 48 c1d0rA_ not modelled 8.7 0 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water 49 d3buxb3 not modelled 8.2 17 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 50 d1jg5a_ not modelled 7.6 31 Fold:GTP cyclohydrolase I feedback regulatory protein, GFRP Superfamily:GTP cyclohydrolase I feedback regulatory protein, GFRP Family:GTP cyclohydrolase I feedback regulatory protein, GFRP 51 c2xykB_ not modelled 7.1 11 PDB header:oxygen storage/transport Chain: B: PDB Molecule:2-on-2 hemoglobin; PDBTitle: group ii 2-on-2 hemoglobin from the plant pathogen2 agrobacterium tumefaciens 52 d2etda1 not modelled 6.3 24 Fold:Bromodomain-like Superfamily:LemA-like Family:LemA-like 53 c2af0A_ not modelled 6.1 10 PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signaling 2; PDBTitle: structure of the regulator of g-protein signaling domain of2 rgs2 54 d7pcka_ not modelled 6.1 11 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Papain-like 55 c1jrjA_ not modelled 5.8 6 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 56 c2ebzA_ not modelled 5.6 6 PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signaling 12; PDBTitle: solution structure of the rgs domain from human regulator2 of g-protein signaling 12 (rgs12)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0