18/01/2012 18:36:27 : INFO  : Run start: Wed Jan 18 18:36:25 GMT 2012
18/01/2012 18:36:36 : INFO  : Initialised job
18/01/2012 18:36:40 : INFO  : Renaming log file 'phyre2_20120118_183623.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/1553516dc34a8b86/phyre_20120118_183623.log'
18/01/2012 18:36:42 : INFO  : Initialised job:
Sequence
>batch____
MKKIECACNFLMDKDAQGYIDLSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDC
NFTTAIVDNVIFRCRRLHNVIFIKASGECVDFSKNILDTVDFSQSQLGHSNFRECQIRNS
NFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDYVRMSTGNFKDCITEQLELTIDYS
DIFWNEDLDGYINNIIKMIDTLPDNAMILKSVLAVKLVMQLKILNIVNKNFIENMKKIFS
HCPYIKDPIIRSYIHSDEDNKFDDFMRQHRFSEVNFDTQQMIDFINRFNTNKWLIDKNNN
FFIQLIDQALRSTDDMIKANVWHLYKEWIRSDDVSPIFIETEDNLRTFNTNELTRNDNIF
ILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNSTYIYKSRHEMLPVNLTQETLFSSKSHG
KYALFPIFTASWRAHRIMNKGV

18/01/2012 18:36:44 : INFO  : Checked sequence
18/01/2012 18:36:49 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 18:36:52 : INFO  : PSI-BLAST 3 iterations
18/01/2012 18:39:25 : INFO  : PSI-BLAST 5 iterations
18/01/2012 18:44:01 : INFO  : Finished PSI-BLAST
18/01/2012 18:44:05 : INFO  : Running Buildali to generate a3m file
18/01/2012 18:58:06 : INFO  : Converting to HMM
18/01/2012 18:58:12 : INFO  : Calibrating HMM
18/01/2012 18:58:41 : INFO  : Searching HMM database
18/01/2012 19:07:50 : INFO  : Finished buildali
18/01/2012 19:07:53 : INFO  : Predicting secondary structure
18/01/2012 19:08:07 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 19:08:10 : INFO  : Predicting Disordered regions
18/01/2012 19:08:17 : INFO  : Predicted Disorder (Disopred)
18/01/2012 19:08:20 : INFO  : Running memsat_svm check
18/01/2012 19:13:43 : INFO  : Running memsat_svm full
18/01/2012 19:20:09 : INFO  : Predicted Transmembrane (memsat_svm) ID '1553516dc34a8b86'
18/01/2012 19:20:12 : INFO  : Initialising fold library search
18/01/2012 19:20:19 : INFO  : Initialised search input
18/01/2012 19:20:23 : INFO  : Building Ensemble models
18/01/2012 19:20:30 : INFO  : Building hh.c3nb2B_.model.1.pdb
18/01/2012 19:20:58 : INFO  : Building hh.c2qzaA_.model.2.pdb
18/01/2012 19:21:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1553516dc34a8b86/hh.c2qzaA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1553516dc34a8b86/c2qzaA_.2.pdb
18/01/2012 19:21:27 : INFO  : Building c3nb2B_.1.pdb
18/01/2012 19:21:50 : INFO  : Building c2qzaA_.2.pdb
18/01/2012 19:22:14 : INFO  : Building c3du1X_.3.pdb
18/01/2012 19:22:38 : INFO  : Building c2o6wA_.4.pdb
18/01/2012 19:23:01 : INFO  : Building c2xt4B_.5.pdb
18/01/2012 19:23:25 : INFO  : Building c3pssB_.6.pdb
18/01/2012 19:23:49 : INFO  : Building d2j8ka1.7.pdb
18/01/2012 19:24:12 : INFO  : Building c2j8kA_.8.pdb
18/01/2012 19:24:36 : INFO  : Building c2w7zB_.9.pdb
18/01/2012 19:25:00 : INFO  : Building c2xtwB_.10.pdb
18/01/2012 19:25:24 : INFO  : Building c2xt4A_.11.pdb
18/01/2012 19:25:50 : INFO  : Building c3n90A_.12.pdb
18/01/2012 19:26:13 : INFO  : Building c2g0yA_.13.pdb
18/01/2012 19:26:38 : INFO  : Building d2bm5a1.14.pdb
18/01/2012 19:27:03 : INFO  : Building d2f3la1.15.pdb
18/01/2012 19:27:27 : INFO  : Building c2j8iB_.16.pdb
18/01/2012 19:27:50 : INFO  : Building d2j8ia1.17.pdb
18/01/2012 19:28:15 : INFO  : Building c3etvA_.18.pdb
18/01/2012 19:28:41 : INFO  : Building d3buxb2.19.pdb
18/01/2012 19:29:05 : INFO  : Building c3bunB_.20.pdb
18/01/2012 19:30:36 : INFO  : Finished HH model building
18/01/2012 19:30:41 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 19:31:54 : INFO  : html domain output complete ID '1553516dc34a8b86'
18/01/2012 20:20:46 : INFO  : Run end  : Wed Jan 18 20:20:44 GMT 2012
