Phyre 2 Results for P32690

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Email | l.a.kelley@imperial.ac.uk
Description | P32690
Date | Thu Jan 5 11:50:14 GMT 2012
Unique Job ID | 1553516dc34a8b86

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3nb2B_
Top template information
PDB header:ligase Chain: B: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of e. coli o157:h7 effector protein nlel
Confidence and coverage
Confidence: | 100.0% | Coverage: | 93%
410 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | K | I | E | C | A | C | N | F | L | M | D | K | D | A | Q | G | Y | I | D | L | S | D | L | D | L | T | S | C | H | F | K | G | D | V | I | S | K | V | S | F | L | S | S | N | L | Q | H | V | T | F | E | C | K | E | I | G | D | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | N | F | T | T | A | I | V | D | N | V | I | F | R | C | R | R | L | H | N | V | I | F | I | K | A | S | G | E | C | V | D | F | S | K | N | I | L | D | T | V | D | F | S | Q | S | Q | L | G | H | S | N | F | R | E | C | Q | I | R | N | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | N | F | D | N | C | Y | L | Y | A | S | H | F | T | R | A | E | F | L | S | A | K | E | I | S | F | I | K | S | N | L | T | A | V | M | F | D | Y | V | R | M | S | T | G | N | F | K | D | C | I | T | E | Q | L | E | L | T | I | D | Y | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | D | I | F | W | N | E | D | L | D | G | Y | I | N | N | I | I | K | M | I | D | T | L | P | D | N | A | M | I | L | K | S | V | L | A | V | K | L | V | M | Q | L | K | I | L | N | I | V | N | K | N | F | I | E | N | M | K | K | I | F | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | H | C | P | Y | I | K | D | P | I | I | R | S | Y | I | H | S | D | E | D | N | K | F | D | D | F | M | R | Q | H | R | F | S | E | V | N | F | D | T | Q | Q | M | I | D | F | I | N | R | F | N | T | N | K | W | L | I | D | K | N | N | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | F | F | I | Q | L | I | D | Q | A | L | R | S | T | D | D | M | I | K | A | N | V | W | H | L | Y | K | E | W | I | R | S | D | D | V | S | P | I | F | I | E | T | E | D | N | L | R | T | F | N | T | N | E | L | T | R | N | D | N | I | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | I | L | F | S | S | V | D | D | G | P | V | M | V | V | S | S | Q | R | L | H | D | M | L | N | P | T | K | D | T | N | W | N | S | T | Y | I | Y | K | S | R | H | E | M | L | P | V | N | L | T | Q | E | T | L | F | S | S | K | S | H | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | .
Sequence |  | K | Y | A | L | F | P | I | F | T | A | S | W | R | A | H | R | I | M | N | K | G | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3nb2B_ |

### PDB 3nb2 chain B

Region: 9 - 433
Aligned: 410
Modelled: 419
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: B: PDB Molecule:secreted effector protein;
PDBTitle: crystal structure of e. coli o157:h7 effector protein nlel

Phyre2
2 |
| c2qzaA_ |

### PDB 2qza chain A

Region: 36 - 433
Aligned: 384
Modelled: 393
Confidence: 100.0%
Identity: 17%
PDB header:ligase
Chain: A: PDB Molecule:secreted effector protein;
PDBTitle: crystal structure of salmonella effector protein sopa

Phyre2
3 |
| c3du1X_ |

### PDB 3du1 chain X

Region: 11 - 175
Aligned: 162
Modelled: 165
Confidence: 99.9%
Identity: 13%
PDB header:structural protein
Chain: X: PDB Molecule:all3740 protein;
PDBTitle: the 2.0 angstrom resolution crystal structure of hetl, a pentapeptide2 repeat protein involved in heterocyst differentiation regulation from3 the cyanobacterium nostoc sp. strain pcc 7120

Phyre2
4 |
| c2o6wA_ |

### PDB 2o6w chain A

Region: 21 - 167
Aligned: 143
Modelled: 144
Confidence: 99.9%
Identity: 15%
PDB header:unknown function
Chain: A: PDB Molecule:repeat five residue (rfr) protein or
PDBTitle: crystal structure of a pentapeptide repeat protein (rfr23)2 from the cyanobacterium cyanothece 51142

Phyre2
5 |
| c2xt4B_ |

### PDB 2xt4 chain B

Region: 12 - 180
Aligned: 166
Modelled: 169
Confidence: 99.9%
Identity: 19%
PDB header:cell cycle
Chain: B: PDB Molecule:mcbg-like protein;
PDBTitle: structure of the pentapeptide repeat protein albg, a2 resistance factor for the topoisomerase poison albicidin.

Phyre2
6 |
| c3pssB_ |

### PDB 3pss chain B

Region: 17 - 178
Aligned: 159
Modelled: 162
Confidence: 99.9%
Identity: 11%
PDB header:cell cycle
Chain: B: PDB Molecule:qnr;
PDBTitle: crystal structure of ahqnr, the qnr protein from aeromonas hydrophila2 (p21 crystal form)

Phyre2
7 |
| d2j8ka1 |

### PDB 2j8k chain A domain 1

Region: 11 - 176
Aligned: 166
Modelled: 166
Confidence: 99.9%
Identity: 17%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pentapeptide repeat-like
Family: Pentapeptide repeats

Phyre2
8 |
| c2j8kA_ |

### PDB 2j8k chain A

Region: 11 - 176
Aligned: 166
Modelled: 166
Confidence: 99.9%
Identity: 17%
PDB header:toxin
Chain: A: PDB Molecule:np275-np276;
PDBTitle: structure of the fusion of np275 and np276, pentapeptide2 repeat proteins from nostoc punctiforme

Phyre2
9 |
| c2w7zB_ |

### PDB 2w7z chain B

Region: 20 - 176
Aligned: 156
Modelled: 157
Confidence: 99.8%
Identity: 16%
PDB header:inhibitor
Chain: B: PDB Molecule:pentapeptide repeat family protein;
PDBTitle: structure of the pentapeptide repeat protein efsqnr, a dna2 gyrase inhibitor. free amines modified by cyclic3 pentylation with glutaraldehyde.

Phyre2
10 |
| c2xtwB_ |

### PDB 2xtw chain B

Region: 20 - 172
Aligned: 150
Modelled: 153
Confidence: 99.8%
Identity: 15%
PDB header:cell cycle
Chain: B: PDB Molecule:qnrb1;
PDBTitle: structure of qnrb1 (full length), a plasmid-mediated2 fluoroquinolone resistance protein

Phyre2
11 |
| c2xt4A_ |

### PDB 2xt4 chain A

Region: 17 - 176
Aligned: 157
Modelled: 160
Confidence: 99.8%
Identity: 14%
PDB header:cell cycle
Chain: A: PDB Molecule:mcbg-like protein;
PDBTitle: structure of the pentapeptide repeat protein albg, a2 resistance factor for the topoisomerase poison albicidin.

Phyre2
12 |
| c3n90A_ |

### PDB 3n90 chain A

Region: 17 - 165
Aligned: 142
Modelled: 149
Confidence: 99.8%
Identity: 12%
PDB header:unknown function
Chain: A: PDB Molecule:thylakoid lumenal 15 kda protein 1, chloroplastic;
PDBTitle: the 1.7 angstrom resolution crystal structure of at2g44920, a2 pentapeptide repeat protein from arabidopsis thaliana thylakoid3 lumen.

Phyre2
13 |
| c2g0yA_ |

### PDB 2g0y chain A

Region: 29 - 166
Aligned: 132
Modelled: 138
Confidence: 99.8%
Identity: 11%
PDB header:unknown function
Chain: A: PDB Molecule:pentapeptide repeat protein;
PDBTitle: crystal structure of a lumenal pentapeptide repeat protein from2 cyanothece sp 51142 at 2.3 angstrom resolution. tetragonal crystal3 form

Phyre2
14 |
| d2bm5a1 |

### PDB 2bm5 chain A domain 1

Region: 17 - 176
Aligned: 160
Modelled: 160
Confidence: 99.8%
Identity: 9%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pentapeptide repeat-like
Family: Pentapeptide repeats

Phyre2
15 |
| d2f3la1 |

### PDB 2f3l chain A domain 1

Region: 30 - 166
Aligned: 131
Modelled: 137
Confidence: 99.8%
Identity: 11%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pentapeptide repeat-like
Family: Pentapeptide repeats

Phyre2
16 |
| c2j8iB_ |

### PDB 2j8i chain B

Region: 25 - 137
Aligned: 113
Modelled: 113
Confidence: 99.8%
Identity: 15%
PDB header:toxin
Chain: B: PDB Molecule:np275;
PDBTitle: structure of np275, a pentapeptide repeat protein from2 nostoc punctiforme

Phyre2
17 |
| d2j8ia1 |

### PDB 2j8i chain A domain 1

Region: 22 - 113
Aligned: 92
Modelled: 92
Confidence: 99.5%
Identity: 14%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pentapeptide repeat-like
Family: Pentapeptide repeats

Phyre2
18 |
| c3etvA_ |

### PDB 3etv chain A

Region: 291 - 383
Aligned: 87
Modelled: 93
Confidence: 78.7%
Identity: 15%
PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein tip20,linker,protein
PDBTitle: crystal structure of a tip20p-dsl1p fusion protein

Phyre2
19 |
| d3buxb2 |

### PDB 3bux chain B domain 2

Region: 201 - 261
Aligned: 53
Modelled: 61
Confidence: 52.8%
Identity: 13%
Fold: N-cbl like
Superfamily: N-terminal domain of cbl (N-cbl)
Family: N-terminal domain of cbl (N-cbl)

Phyre2
20 |
| c3bunB_ |

### PDB 3bun chain B

Region: 201 - 261
Aligned: 53
Modelled: 61
Confidence: 47.1%
Identity: 13%
PDB header:ligase/signaling protein
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase cbl;
PDBTitle: crystal structure of c-cbl-tkb domain complexed with its2 binding motif in sprouty4

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3nb2B_ |
|  | 100.0 | 20 | PDB header:ligase Chain: B: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of e. coli o157:h7 effector protein nlel
2 | c2qzaA_ |
|  | 100.0 | 17 | PDB header:ligase Chain: A: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of salmonella effector protein sopa
3 | c3du1X_ |
|  | 99.9 | 13 | PDB header:structural protein Chain: X: PDB Molecule:all3740 protein; PDBTitle: the 2.0 angstrom resolution crystal structure of hetl, a pentapeptide2 repeat protein involved in heterocyst differentiation regulation from3 the cyanobacterium nostoc sp. strain pcc 7120
4 | c2o6wA_ |
|  | 99.9 | 15 | PDB header:unknown function Chain: A: PDB Molecule:repeat five residue (rfr) protein or PDBTitle: crystal structure of a pentapeptide repeat protein (rfr23)2 from the cyanobacterium cyanothece 51142
5 | c2xt4B_ |
|  | 99.9 | 19 | PDB header:cell cycle Chain: B: PDB Molecule:mcbg-like protein; PDBTitle: structure of the pentapeptide repeat protein albg, a2 resistance factor for the topoisomerase poison albicidin.
6 | c3pssB_ |
|  | 99.9 | 11 | PDB header:cell cycle Chain: B: PDB Molecule:qnr; PDBTitle: crystal structure of ahqnr, the qnr protein from aeromonas hydrophila2 (p21 crystal form)
7 | d2j8ka1 |
|  | 99.9 | 17 | Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats
8 | c2j8kA_ |
|  | 99.9 | 17 | PDB header:toxin Chain: A: PDB Molecule:np275-np276; PDBTitle: structure of the fusion of np275 and np276, pentapeptide2 repeat proteins from nostoc punctiforme
9 | c2w7zB_ |
|  | 99.8 | 16 | PDB header:inhibitor Chain: B: PDB Molecule:pentapeptide repeat family protein; PDBTitle: structure of the pentapeptide repeat protein efsqnr, a dna2 gyrase inhibitor. free amines modified by cyclic3 pentylation with glutaraldehyde.
10 | c2xtwB_ |
|  | 99.8 | 15 | PDB header:cell cycle Chain: B: PDB Molecule:qnrb1; PDBTitle: structure of qnrb1 (full length), a plasmid-mediated2 fluoroquinolone resistance protein
11 | c2xt4A_ |
|  | 99.8 | 14 | PDB header:cell cycle Chain: A: PDB Molecule:mcbg-like protein; PDBTitle: structure of the pentapeptide repeat protein albg, a2 resistance factor for the topoisomerase poison albicidin.
12 | c3n90A_ |
|  | 99.8 | 12 | PDB header:unknown function Chain: A: PDB Molecule:thylakoid lumenal 15 kda protein 1, chloroplastic; PDBTitle: the 1.7 angstrom resolution crystal structure of at2g44920, a2 pentapeptide repeat protein from arabidopsis thaliana thylakoid3 lumen.
13 | c2g0yA_ |
|  | 99.8 | 11 | PDB header:unknown function Chain: A: PDB Molecule:pentapeptide repeat protein; PDBTitle: crystal structure of a lumenal pentapeptide repeat protein from2 cyanothece sp 51142 at 2.3 angstrom resolution. tetragonal crystal3 form
14 | d2bm5a1 |
|  | 99.8 | 9 | Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats
15 | d2f3la1 |
|  | 99.8 | 11 | Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats
16 | c2j8iB_ |
|  | 99.8 | 15 | PDB header:toxin Chain: B: PDB Molecule:np275; PDBTitle: structure of np275, a pentapeptide repeat protein from2 nostoc punctiforme
17 | d2j8ia1 |
|  | 99.5 | 14 | Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats
18 | c3etvA_ |
|  | 78.7 | 15 | PDB header:transport protein Chain: A: PDB Molecule:protein transport protein tip20,linker,protein PDBTitle: crystal structure of a tip20p-dsl1p fusion protein
19 | d3buxb2 |
|  | 52.8 | 13 | Fold:N-cbl like Superfamily:N-terminal domain of cbl (N-cbl) Family:N-terminal domain of cbl (N-cbl)
20 | c3bunB_ |
|  | 47.1 | 13 | PDB header:ligase/signaling protein Chain: B: PDB Molecule:e3 ubiquitin-protein ligase cbl; PDBTitle: crystal structure of c-cbl-tkb domain complexed with its2 binding motif in sprouty4
21 | c2cblA_ |
| not modelled | 42.8 | 13 | PDB header:complex (proto-oncogene/peptide) Chain: A: PDB Molecule:proto-oncogene cbl; PDBTitle: n-terminal domain of cbl in complex with its binding site2 on zap-70
22 | d1td6a_ |
| not modelled | 39.9 | 16 | Fold:Hypothetical protein MPN330 Superfamily:Hypothetical protein MPN330 Family:Hypothetical protein MPN330
23 | d1h8ba_ |
| not modelled | 37.4 | 19 | Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins
24 | c3ddrC_ |
| not modelled | 36.0 | 11 | PDB header:membrane protein/heme binding protein Chain: C: PDB Molecule:hemophore hasa; PDBTitle: structure of the serratia marcescens hemophore receptor hasr-ile671gly2 mutant in complex with its hemophore hasa and heme
25 | c1fbvA_ |
| not modelled | 35.1 | 13 | PDB header:ligase Chain: A: PDB Molecule:signal transduction protein cbl; PDBTitle: structure of a cbl-ubch7 complex: ring domain function in2 ubiquitin-protein ligases
26 | d1dlya_ |
| not modelled | 33.4 | 22 | Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin
27 | c1dlyA_ |
| not modelled | 33.4 | 22 | PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin; PDBTitle: x-ray crystal structure of hemoglobin from the green2 unicellular alga chlamydomonas eugametos
28 | d1idra_ |
| not modelled | 30.7 | 23 | Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin
29 | c2kscA_ |
| not modelled | 28.9 | 16 | PDB header:unknown function Chain: A: PDB Molecule:cyanoglobin; PDBTitle: solution structure of synechococcus sp. pcc 7002 hemoglobin
30 | d1dk0a_ |
| not modelled | 26.9 | 12 | Fold:Heme-binding protein A (HasA) Superfamily:Heme-binding protein A (HasA) Family:Heme-binding protein A (HasA)
31 | c3aq8A_ |
| not modelled | 25.6 | 26 | PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form
32 | d1s69a_ |
| not modelled | 23.4 | 13 | Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin
33 | d1m8na_ |
| not modelled | 23.3 | 11 | Fold:Single-stranded left-handed beta-helix Superfamily:An insect antifreeze protein Family:An insect antifreeze protein
34 | d1dlwa_ |
| not modelled | 21.5 | 13 | Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin
35 | d1ngka_ |
| not modelled | 20.6 | 13 | Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin
36 | c3op0B_ |
| not modelled | 17.2 | 8 | PDB header:signaling protein/signaling protein regu Chain: B: PDB Molecule:signal transduction protein cbl-c; PDBTitle: crystal structure of cbl-c (cbl-3) tkb domain in complex with egfr2 py1069 peptide
37 | c1z9eA_ |
| not modelled | 16.0 | 11 | PDB header:protein binding/transcription Chain: A: PDB Molecule:pc4 and sfrs1 interacting protein 2; PDBTitle: solution structure of the hiv-1 integrase-binding domain in2 ledgf/p75
38 | d1ogmx2 |
| not modelled | 15.1 | 18 | Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Dextranase, catalytic domain
39 | d2b4jc1 |
| not modelled | 15.0 | 11 | Fold:N-cbl like Superfamily:HIV integrase-binding domain Family:HIV integrase-binding domain
40 | d1fqia_ |
| not modelled | 14.1 | 14 | Fold:Regulator of G-protein signaling, RGS Superfamily:Regulator of G-protein signaling, RGS Family:Regulator of G-protein signaling, RGS
41 | c2crpA_ |
| not modelled | 12.3 | 13 | PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signaling 5; PDBTitle: solution structure of the rgs domain of regulator of g-2 protein signalling 5 (rgs 5)
42 | c2p90B_ |
| not modelled | 11.8 | 12 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein cgl1923; PDBTitle: the crystal structure of a protein of unknown function from2 corynebacterium glutamicum atcc 13032
43 | d1ko7a1 |
| not modelled | 11.5 | 20 | Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain
44 | c2bmmA_ |
| not modelled | 11.3 | 9 | PDB header:oxygen storage/transport Chain: A: PDB Molecule:thermostable hemoglobin from thermobifida fusca; PDBTitle: x-ray structure of a novel thermostable hemoglobin from the2 actinobacterium thermobifida fusca
45 | c2gtpD_ |
| not modelled | 10.4 | 19 | PDB header:signaling protein Chain: D: PDB Molecule:regulator of g-protein signaling 1; PDBTitle: crystal structure of the heterodimeric complex of human rgs1 and2 activated gi alpha 1
46 | c2pbiA_ |
| not modelled | 10.0 | 13 | PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signaling 9; PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure
47 | c2d9jA_ |
| not modelled | 8.7 | 13 | PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signalling 7; PDBTitle: solution structure of the rgs domain of regulator of g-2 protein signaling 7
48 | c1d0rA_ |
| not modelled | 8.7 | 0 | PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water
49 | d3buxb3 |
| not modelled | 8.2 | 17 | Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain
50 | d1jg5a_ |
| not modelled | 7.6 | 31 | Fold:GTP cyclohydrolase I feedback regulatory protein, GFRP Superfamily:GTP cyclohydrolase I feedback regulatory protein, GFRP Family:GTP cyclohydrolase I feedback regulatory protein, GFRP
51 | c2xykB_ |
| not modelled | 7.1 | 11 | PDB header:oxygen storage/transport Chain: B: PDB Molecule:2-on-2 hemoglobin; PDBTitle: group ii 2-on-2 hemoglobin from the plant pathogen2 agrobacterium tumefaciens
52 | d2etda1 |
| not modelled | 6.3 | 24 | Fold:Bromodomain-like Superfamily:LemA-like Family:LemA-like
53 | c2af0A_ |
| not modelled | 6.1 | 10 | PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signaling 2; PDBTitle: structure of the regulator of g-protein signaling domain of2 rgs2
54 | d7pcka_ |
| not modelled | 6.1 | 11 | Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Papain-like
55 | c1jrjA_ |
| not modelled | 5.8 | 6 | PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol
56 | c2ebzA_ |
| not modelled | 5.6 | 6 | PDB header:signaling protein Chain: A: PDB Molecule:regulator of g-protein signaling 12; PDBTitle: solution structure of the rgs domain from human regulator2 of g-protein signaling 12 (rgs12)

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0