Phyre 2 alignment of P32690 with c2aenH_

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Job Description | P32690
Confidence | 3.86% | Date | Thu Jan 5 11:50:14 GMT 2012
Rank | 74 | Aligned Residues | 26
% Identity | 27% | Template | c2aenH_
PDB info | PDB header:viral protein | Chain: H: PDB Molecule:outer capsid protein vp4, vp8* core; | PDBTitle: crystal structure of the rotavirus strain ds-1 vp8* core
Resolution | 1.60 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 347 | . | . | 350 | . | . | . | . | . | . | . | . |  |  | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | T | F | N | T | N | E | L | T | R | N | D | N | . | . | I | F | I | L | F | S | S | V | D | D | G | P | V | M
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | G | P | Y | Q | P | T | T | F | K | P | P | N | D | Y | W | L | L | I | S | S | N | T | N | G | V | V | Y
Template Known Secondary structure |  |  |  |  |  |  | S |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  | S | S |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 66 | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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