Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	F	V	D	E	Y	R	A	P	E	Q	V	M	Q	L	I	E	H	L	R	E	R	A	S	H	L	S	Y	T	A	E	R	P	L	R	I	M	E	V	C	G	G	H	T	H	A	I	F	K	F	G	L	D	Q	L	L	P	E	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																							?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	E	F	I	H	G	P	G	C	P	V	C	V	L	P	M	G	R	I	D	T	C	V	E	I	A	S	H	P	E	V	I	F	C	T	F	G	D	A	M	R	V	P	G	K	Q	G	S	L	L	Q	A	K	A	R	G	A	D	V	R
Secondary structure
SS confidence
Disorder																																																?	?						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	V	Y	S	P	M	D	A	L	K	L	A	Q	E	N	P	T	R	K	V	V	F	F	G	L	G	F	E	T	T	M	P	T	T	A	I	T	L	Q	Q	A	K	A	R	D	V	Q	N	F	Y	F	F	C	Q	H	I	T	L	I	P
Secondary structure
SS confidence
Disorder																																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	L	R	S	L	L	E	Q	P	D	N	G	I	D	A	F	L	A	P	G	H	V	S	M	V	I	G	T	D	A	Y	N	F	I	A	S	D	F	H	R	P	L	V	V	A	G	F	E	P	L	D	L	L	Q	G	V	V	M	L	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	Q	K	I	A	A	H	S	K	V	E	N	Q	Y	R	R	V	V	P	D	A	G	N	L	L	A	Q	Q	A	I	A	D	V	F	C	V	N	G	D	S	E	W	R	G	L	G	V	I	E	S	S	G	V	H	L	T	P	D	Y	Q
Secondary structure
SS confidence
Disorder						?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		R	F	D	A	E	A	H	F	R	P	A	P	Q	Q	V	C	D	D	P	R	A	R	C	G	E	V	L	T	G	K	C	K	P	H	Q	C	P	L	F	G	N	T	C	N	P	Q	T	A	F	G	A	L	M	V	S	S	E	G	A	C
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.
Sequence		A	A	W	Y	Q	Y	R	Q	Q	E	S	E	A
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2z1d chain A Region: 6 - 368 Aligned: 356 Modelled: 363 Confidence: 100.0% Identity: 38% PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis Phyre2 PDB 7req chain A domain 2 Region: 87 - 200 Aligned: 110 Modelled: 114 Confidence: 95.1% Identity: 14% Fold: Flavodoxin-like Superfamily: Cobalamin (vitamin B12)-binding domain Family: Cobalamin (vitamin B12)-binding domain Phyre2 PDB 1gqn chain A Region: 4 - 146 Aligned: 131 Modelled: 143 Confidence: 90.6% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I aldolase Phyre2 PDB 3bic chain A Region: 124 - 202 Aligned: 75 Modelled: 79 Confidence: 88.5% Identity: 12% PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor; PDBTitle: crystal structure of human methylmalonyl-coa mutase Phyre2 PDB 2yxb chain A Region: 87 - 244 Aligned: 128 Modelled: 132 Confidence: 87.1% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix Phyre2 PDB 2k8s chain A Region: 68 - 98 Aligned: 30 Modelled: 31 Confidence: 86.4% Identity: 30% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution nmr structure of dimeric thioredoxin-like protein2 ne0084 from nitrosomonas europea: northeast structural3 genomics target net6 Phyre2 PDB 3l2i chain B Region: 4 - 146 Aligned: 131 Modelled: 143 Confidence: 86.2% Identity: 16% PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2. Phyre2 PDB 3js3 chain C Region: 4 - 146 Aligned: 131 Modelled: 143 Confidence: 83.9% Identity: 21% PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of type i 3-dehydroquinate dehydratase (arod) from2 clostridium difficile with covalent reaction intermediate Phyre2 PDB 2yr1 chain B Region: 2 - 146 Aligned: 129 Modelled: 144 Confidence: 81.5% Identity: 20% PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of 3-dehydroquinate dehydratase from geobacillus2 kaustophilus hta426 Phyre2 PDB 2q5c chain A Region: 123 - 244 Aligned: 105 Modelled: 122 Confidence: 78.1% Identity: 9% PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum Phyre2 PDB 1poi chain B Region: 123 - 173 Aligned: 45 Modelled: 51 Confidence: 73.5% Identity: 22% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase beta subunit-like Phyre2 PDB 2pju chain D Region: 123 - 244 Aligned: 104 Modelled: 122 Confidence: 72.4% Identity: 13% PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr Phyre2 PDB 1ccw chain A Region: 87 - 200 Aligned: 111 Modelled: 114 Confidence: 70.8% Identity: 14% Fold: Flavodoxin-like Superfamily: Cobalamin (vitamin B12)-binding domain Family: Cobalamin (vitamin B12)-binding domain Phyre2 PDB 2pju chain A domain 1 Region: 123 - 244 Aligned: 104 Modelled: 122 Confidence: 69.8% Identity: 13% Fold: Chelatase-like Superfamily: PrpR receptor domain-like Family: PrpR receptor domain-like Phyre2 PDB 3fld chain A Region: 113 - 142 Aligned: 30 Modelled: 30 Confidence: 67.4% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:protein trai; PDBTitle: crystal structure of the trai c-terminal domain Phyre2 PDB 1oao chain A Region: 9 - 134 Aligned: 111 Modelled: 113 Confidence: 61.7% Identity: 17% Fold: Prismane protein-like Superfamily: Prismane protein-like Family: Carbon monoxide dehydrogenase Phyre2 PDB 1e1c chain A Region: 124 - 200 Aligned: 71 Modelled: 77 Confidence: 60.3% Identity: 18% PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant Phyre2 PDB 1su7 chain A Region: 9 - 134 Aligned: 113 Modelled: 113 Confidence: 60.3% Identity: 13% Fold: Prismane protein-like Superfamily: Prismane protein-like Family: Carbon monoxide dehydrogenase Phyre2 PDB 1jqk chain E Region: 9 - 134 Aligned: 113 Modelled: 113 Confidence: 56.6% Identity: 15% PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase; PDBTitle: crystal structure of carbon monoxide dehydrogenase from2 rhodospirillum rubrum Phyre2 PDB 3lte chain H Region: 110 - 197 Aligned: 83 Modelled: 88 Confidence: 55.9% Identity: 13% PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri Phyre2 1 c2z1dA_ 2 d7reqa2 3 d1gqna_ 4 c3bicA_ 5 c2yxbA_ 6 c2k8sA_ 7 c3l2iB_ 8 c3js3C_ 9 c2yr1B_ 10 c2q5cA_ 11 d1poib_ 12 c2pjuD_ 13 d1ccwa_ 14 d2pjua1 15 c3fldA_ 16 d1oaoa_ 17 c1e1cA_ 18 d1su7a_ 19 c1jqkE_ 20 c3lteH_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2z1dA_ 100.0 38 PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis 2 d7reqa2 95.1 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 3 d1gqna_ 90.6 21 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 4 c3bicA_ 88.5 12 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor; PDBTitle: crystal structure of human methylmalonyl-coa mutase 5 c2yxbA_ 87.1 17 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 6 c2k8sA_ 86.4 30 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin; PDBTitle: solution nmr structure of dimeric thioredoxin-like protein2 ne0084 from nitrosomonas europea: northeast structural3 genomics target net6 7 c3l2iB_ 86.2 16 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2. 8 c3js3C_ 83.9 21 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of type i 3-dehydroquinate dehydratase (arod) from2 clostridium difficile with covalent reaction intermediate 9 c2yr1B_ 81.5 20 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of 3-dehydroquinate dehydratase from geobacillus2 kaustophilus hta426 10 c2q5cA_ 78.1 9 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 11 d1poib_ 73.5 22 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 12 c2pjuD_ 72.4 13 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 13 d1ccwa_ 70.8 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 14 d2pjua1 69.8 13 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 15 c3fldA_ 67.4 23 PDB header:hydrolase Chain: A: PDB Molecule:protein trai; PDBTitle: crystal structure of the trai c-terminal domain 16 d1oaoa_ 61.7 17 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 17 c1e1cA_ 60.3 18 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant 18 d1su7a_ 60.3 13 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 19 c1jqkE_ 56.6 15 PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase; PDBTitle: crystal structure of carbon monoxide dehydrogenase from2 rhodospirillum rubrum 20 c3lteH_ 55.9 13 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 21 d2pl1a1 not modelled 54.1 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 22 d1jqka_ not modelled 54.1 15 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 23 d1sfla_ not modelled 53.3 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 24 c2axoA_ not modelled 53.1 21 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein atu2684; PDBTitle: x-ray crystal structure of protein agr_c_4864 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr35. 25 d2fug61 not modelled 49.0 28 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like 26 d1iloa_ not modelled 45.5 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 27 d1olta_ not modelled 44.4 18 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN 28 c1e5dA_ not modelled 43.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 29 c1e5lA_ not modelled 42.3 18 PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine reductase; PDBTitle: apo saccharopine reductase from magnaporthe grisea 30 d2axoa1 not modelled 40.8 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Atu2684-like 31 c3gt7A_ not modelled 39.5 13 PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus 32 c2qs0A_ not modelled 38.6 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 33 d1rjda_ not modelled 36.2 27 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Leucine carboxy methyltransferase Ppm1 34 d1mb6a_ not modelled 36.0 31 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 35 d1niya_ not modelled 35.9 46 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 36 c3c3mA_ not modelled 35.8 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 37 d1fmfa_ not modelled 34.6 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 38 d1mvoa_ not modelled 34.1 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 39 c2jk1A_ not modelled 33.3 12 PDB header:dna-binding Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1; PDBTitle: crystal structure of the wild-type hupr receiver domain 40 d1nixa_ not modelled 32.9 38 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 41 c2zayA_ not modelled 32.8 10 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 42 c3cnbC_ not modelled 32.7 14 PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h 43 d1mxsa_ not modelled 32.4 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 44 d2pw9a1 not modelled 31.1 10 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:FdhD/NarQ 45 d2dvta1 not modelled 30.9 13 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:PP1699/LP2961-like 46 d1zesa1 not modelled 29.5 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 47 d1i5ea_ not modelled 29.0 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 48 d1wyza1 not modelled 28.9 17 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 49 d1xcfa_ not modelled 27.9 12 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 50 c3bo9B_ not modelled 27.6 19 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nitroalkan dioxygenase; PDBTitle: crystal structure of putative nitroalkan dioxygenase (tm0800) from2 thermotoga maritima at 2.71 a resolution 51 d2c4va1 not modelled 27.1 14 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 52 d1dcfa_ not modelled 27.1 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:Receiver domain of the ethylene receptor 53 d1efpb_ not modelled 26.9 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 54 c1iclA_ not modelled 26.5 100 PDB header:de novo protein Chain: A: PDB Molecule:th1ox; PDBTitle: solution structure of designed beta-sheet mini-protein th1ox 55 c3h31A_ not modelled 26.4 21 PDB header:electron transport Chain: A: PDB Molecule:high potential iron-sulfur protein; PDBTitle: structure of rhodothermus marinus hipip at 1.0 a resolution 56 c3bw2A_ not modelled 26.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:2-nitropropane dioxygenase; PDBTitle: crystal structures and site-directed mutagenesis study of nitroalkane2 oxidase from streptomyces ansochromogenes 57 c2nt3A_ not modelled 24.4 11 PDB header:signaling protein Chain: A: PDB Molecule:response regulator homolog; PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant) 58 d1xtta1 not modelled 24.0 18 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 59 c2qzjC_ not modelled 23.8 16 PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile 60 c3ktoA_ not modelled 23.7 10 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica 61 c2e55D_ not modelled 23.6 20 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus 62 c3epmB_ not modelled 23.4 38 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiamine biosynthesis protein thic; PDBTitle: crystal structure of caulobacter crescentus thic 63 d1v9sa1 not modelled 22.7 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 64 c2p2vA_ not modelled 22.3 15 PDB header:transferase Chain: A: PDB Molecule:alpha-2,3-sialyltransferase; PDBTitle: crystal structure analysis of monofunctional alpha-2,3-2 sialyltransferase cst-i from campylobacter jejuni 65 d1o58a_ not modelled 22.3 22 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 66 c2o7qA_ not modelled 22.3 16 PDB header:oxidoreductase,transferase Chain: A: PDB Molecule:bifunctional 3-dehydroquinate dehydratase/shikimate PDBTitle: crystal structure of the a. thaliana dhq-dehydroshikimate-sdh-2 shikimate-nadp(h) 67 c1q68A_ not modelled 20.5 47 PDB header:membrane protein/transferase Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: solution structure of t-cell surface glycoprotein cd4 and2 proto-oncogene tyrosine-protein kinase lck fragments 68 c1e8cB_ not modelled 20.4 19 PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli 69 c2jtbA_ not modelled 20.1 42 PDB header:toxin Chain: A: PDB Molecule:hainantoxin-3; PDBTitle: three dimensional solution structure of hainantoxin-iii by2 2d 1h-nmr 70 c3o3nB_ not modelled 20.1 16 PDB header:lyase Chain: B: PDB Molecule:beta-subunit 2-hydroxyacyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 71 d7odca2 not modelled 20.1 14 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 72 c2oczA_ not modelled 19.9 13 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: the structure of a putative 3-dehydroquinate dehydratase from2 streptococcus pyogenes. 73 c3kwpA_ not modelled 19.6 14 PDB header:transferase Chain: A: PDB Molecule:predicted methyltransferase; PDBTitle: crystal structure of putative methyltransferase from lactobacillus2 brevis 74 c2g40A_ not modelled 19.5 4 PDB header:unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a duf162 family protein (dr_1909) from2 deinococcus radiodurans at 1.70 a resolution 75 d2g40a1 not modelled 19.5 4 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:YkgG-like 76 d1uqra_ not modelled 19.4 16 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 77 d1gtza_ not modelled 19.2 20 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 78 c2qsjB_ not modelled 19.0 18 PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi 79 c3hdgE_ not modelled 19.0 13 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 80 d1k3sa_ not modelled 18.5 19 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 81 c3ju3A_ not modelled 18.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:probable 2-oxoacid ferredoxin oxidoreductase, alpha chain; PDBTitle: crystal structure of alpha chain of probable 2-oxoacid ferredoxin2 oxidoreductase from thermoplasma acidophilum 82 c2iv0A_ not modelled 17.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:isocitrate dehydrogenase; PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers 83 c2fgxA_ not modelled 17.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3. 84 d3clsc1 not modelled 17.3 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 85 c2nvwB_ not modelled 17.2 11 PDB header:transcription Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis 86 c3kcnA_ not modelled 17.1 14 PDB header:lyase Chain: A: PDB Molecule:adenylate cyclase homolog; PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica 87 d1s4da_ not modelled 16.6 15 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 88 d1o5oa_ not modelled 16.5 14 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 89 c3shoA_ not modelled 16.4 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) 90 d1j6ua2 not modelled 16.2 16 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 91 c2yswB_ not modelled 16.1 13 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of the 3-dehydroquinate dehydratase from aquifex2 aeolicus vf5 92 c3myrE_ not modelled 16.0 23 PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 93 d1ey1a_ not modelled 15.8 16 Fold:NusB-like Superfamily:NusB-like Family:Antitermination factor NusB 94 c3h5iA_ not modelled 15.7 10 PDB header:transcription Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans 95 c3hdvB_ not modelled 15.6 15 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida 96 d1e8ca2 not modelled 15.5 17 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 97 d2bb3a1 not modelled 15.2 20 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 98 d1l0sa_ not modelled 15.0 63 Fold:Single-stranded left-handed beta-helix Superfamily:An insect antifreeze protein Family:An insect antifreeze protein 99 c1o5zA_ not modelled 14.9 13 PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase/dihydrofolate synthase; PDBTitle: crystal structure of folylpolyglutamate synthase (tm0166) from2 thermotoga maritima at 2.10 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0