Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

R

K

G

C

F

G

L

V

S

L

V

L

L

L

L

V

G

C

R

S

H

P

E

I

P

V

N

D

E

Q

S

L

V

M

E

S

S

L

L

A

A

G

I

S

A

E

K

P

F

L

S

T

S

D

I

Q

P

S

A

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

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120

Sequence

S

S

T

L

Y

N

E

R

Q

E

P

V

T

V

H

Y

R

F

Y

W

Y

D

A

R

G

L

E

M

H

P

L

E

R

P

R

S

V

T

I

P

A

H

S

A

V

T

L

Y

G

S

A

N

F

L

G

A

H

K

V

R

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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Sequence

L

Y

L

Y

L

Secondary structure

SS confidence

Disorder

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3o0l chain B Region: 23 - 124 Aligned: 102 Modelled: 102 Confidence: 100.0% Identity: 13% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution Phyre2 PDB 2vzs chain A domain 2 Region: 37 - 116 Aligned: 80 Modelled: 80 Confidence: 91.2% Identity: 15% Fold: Immunoglobulin-like beta-sandwich Superfamily: beta-Galactosidase/glucuronidase domain Family: beta-Galactosidase/glucuronidase domain Phyre2 PDB 3fn9 chain B Region: 34 - 115 Aligned: 82 Modelled: 82 Confidence: 85.6% Identity: 11% PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis Phyre2 PDB 2co7 chain B domain 1 Region: 38 - 125 Aligned: 85 Modelled: 84 Confidence: 85.1% Identity: 11% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 43 - 124 Aligned: 80 Modelled: 82 Confidence: 82.8% Identity: 9% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3isy chain A Region: 52 - 125 Aligned: 74 Modelled: 74 Confidence: 77.8% Identity: 9% PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution Phyre2 PDB 1lm8 chain V Region: 49 - 102 Aligned: 50 Modelled: 54 Confidence: 77.5% Identity: 20% Fold: Prealbumin-like Superfamily: VHL Family: VHL Phyre2 PDB 2x41 chain A Region: 44 - 110 Aligned: 67 Modelled: 67 Confidence: 76.2% Identity: 7% PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose Phyre2 PDB 3but chain A Region: 42 - 111 Aligned: 70 Modelled: 70 Confidence: 71.0% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus Phyre2 PDB 1p5v chain A domain 1 Region: 38 - 124 Aligned: 79 Modelled: 87 Confidence: 62.4% Identity: 11% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1e9z chain A Region: 30 - 111 Aligned: 82 Modelled: 82 Confidence: 59.7% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease Phyre2 PDB 3rgb chain A Region: 2 - 115 Aligned: 109 Modelled: 114 Confidence: 59.7% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) Phyre2 PDB 2co7 chain B Region: 38 - 124 Aligned: 85 Modelled: 84 Confidence: 59.4% Identity: 11% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 1s3r chain A Region: 22 - 124 Aligned: 95 Modelled: 103 Confidence: 57.7% Identity: 17% PDB header:toxin Chain: A: PDB Molecule:intermedilysin; PDBTitle: crystal structure of the human-specific toxin intermedilysin Phyre2 PDB 3cfu chain A Region: 55 - 121 Aligned: 67 Modelled: 67 Confidence: 56.7% Identity: 13% PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 Phyre2 PDB 1yyc chain A Region: 45 - 108 Aligned: 61 Modelled: 64 Confidence: 54.2% Identity: 8% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 Phyre2 PDB 2je8 chain A domain 1 Region: 42 - 115 Aligned: 72 Modelled: 74 Confidence: 53.1% Identity: 10% Fold: Immunoglobulin-like beta-sandwich Superfamily: beta-Galactosidase/glucuronidase domain Family: beta-Galactosidase/glucuronidase domain Phyre2 PDB 3ac0 chain B Region: 45 - 112 Aligned: 68 Modelled: 68 Confidence: 52.2% Identity: 10% PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose Phyre2 PDB 2kl6 chain A Region: 44 - 124 Aligned: 75 Modelled: 81 Confidence: 51.3% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a Phyre2 PDB 1z9s chain A Region: 41 - 124 Aligned: 81 Modelled: 84 Confidence: 50.7% Identity: 11% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 1 c3o0lB_ 2 d2vzsa2 3 c3fn9B_ 4 d2co7b1 5 d3bwuc1 6 c3isyA_ 7 d1lm8v_ 8 c2x41A_ 9 c3butA_ 10 d1p5va1 11 c1e9zA_ 12 c3rgbA_ 13 c2co7B_ 14 c1s3rA_ 15 c3cfuA_ 16 c1yycA_ 17 d2je8a1 18 c3ac0B_ 19 c2kl6A_ 20 c1z9sA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3o0lB_ 100.0 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 2 d2vzsa2 91.2 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 3 c3fn9B_ 85.6 11 PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 4 d2co7b1 85.1 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 5 d3bwuc1 82.8 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 6 c3isyA_ 77.8 9 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 7 d1lm8v_ 77.5 20 Fold:Prealbumin-like Superfamily:VHL Family:VHL 8 c2x41A_ 76.2 7 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 9 c3butA_ 71.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus 10 d1p5va1 62.4 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 c1e9zA_ 59.7 9 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 12 c3rgbA_ 59.7 17 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 13 c2co7B_ 59.4 11 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 14 c1s3rA_ 57.7 17 PDB header:toxin Chain: A: PDB Molecule:intermedilysin; PDBTitle: crystal structure of the human-specific toxin intermedilysin 15 c3cfuA_ 56.7 13 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 16 c1yycA_ 54.2 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 17 d2je8a1 53.1 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 18 c3ac0B_ 52.2 10 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 19 c2kl6A_ 51.3 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a 20 c1z9sA_ 50.7 11 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 21 c2xfgB_ not modelled 47.7 11 PDB header:hydrolase/sugar binding protein Chain: B: PDB Molecule:endoglucanase 1; PDBTitle: reassembly and co-crystallization of a family 9 processive2 endoglucanase from separately expressed gh9 and cbm3c3 modules 22 c2xbtA_ not modelled 46.1 15 PDB header:sugar binding protein Chain: A: PDB Molecule:cellulosomal scaffoldin; PDBTitle: structure of a scaffoldin carbohydrate-binding module family 3b from2 the cellulosome of bacteroides cellulosolvens: structural diversity3 and implications for carbohydrate binding 23 d2j2za1 not modelled 45.2 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 24 c3qgaD_ not modelled 43.9 10 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 25 d1pfoa_ not modelled 42.3 19 Fold:Perfringolysin Superfamily:Perfringolysin Family:Perfringolysin 26 c1pfoA_ not modelled 42.3 19 PDB header:toxin Chain: A: PDB Molecule:perfringolysin o; PDBTitle: perfringolysin o 27 d1xo8a_ not modelled 42.2 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 28 c3q48B_ not modelled 41.7 9 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 29 d1jz8a2 not modelled 38.3 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 30 c3hs0B_ not modelled 33.5 19 PDB header:immune system Chain: B: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b 31 c3cu7A_ not modelled 33.0 14 PDB header:immune system Chain: A: PDB Molecule:complement c5; PDBTitle: human complement component 5 32 c2ys4A_ not modelled 32.8 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 33 c3hvnA_ not modelled 32.7 16 PDB header:toxin Chain: A: PDB Molecule:hemolysin; PDBTitle: crystal structure of cytotoxin protein suilysin from2 streptococcus suis 34 d1cyga2 not modelled 32.0 17 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:Starch-binding domain 35 d1qhoa2 not modelled 31.9 17 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:Starch-binding domain 36 d1yq2a1 not modelled 31.1 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 37 d1i5pa1 not modelled 31.0 24 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 38 c1skhA_ not modelled 30.6 26 PDB header:unknown function Chain: A: PDB Molecule:major prion protein 2; PDBTitle: n-terminal (1-30) of bovine prion protein 39 c2c3wB_ not modelled 30.4 22 PDB header:sugar-binding protein Chain: B: PDB Molecule:alpha-amylase g-6; PDBTitle: structure of cbm25 from bacillus halodurans amylase in2 complex with maltotetraose 40 d1l4ia1 not modelled 29.4 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 41 d1ejxb_ not modelled 28.4 7 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 42 c2f3xA_ not modelled 28.4 9 PDB header:gene regulation Chain: A: PDB Molecule:transcription factor fapr; PDBTitle: crystal structure of fapr (in complex with effector)- a2 global regulator of fatty acid biosynthesis in b. subtilis 43 d4ubpb_ not modelled 28.1 4 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 44 d1nbca_ not modelled 27.5 14 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 45 c2e6jA_ not modelled 27.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 46 c2je8B_ not modelled 25.3 19 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 47 c2l8aA_ not modelled 24.3 17 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: structure of a novel cbm3 lacking the calcium-binding site 48 c1l4iA_ not modelled 23.5 10 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 49 d2j5wa3 not modelled 23.1 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 50 c2w5fB_ not modelled 23.0 15 PDB header:hydrolase Chain: B: PDB Molecule:endo-1,4-beta-xylanase y; PDBTitle: high resolution crystallographic structure of the2 clostridium thermocellum n-terminal endo-1,4-beta-d-3 xylanase 10b (xyn10b) cbm22-1-gh10 modules complexed with4 xylohexaose 51 d2q0zx2 not modelled 22.8 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Sec63 C-terminal domain-like 52 c2q0zX_ not modelled 22.4 16 PDB header:protein transport Chain: X: PDB Molecule:protein pro2281; PDBTitle: crystal structure of q9p172/sec63 from homo sapiens.2 northeast structural genomics target hr1979. 53 d1e9ya1 not modelled 22.4 10 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 54 c3hftA_ not modelled 19.8 36 PDB header:hydrolase Chain: A: PDB Molecule:wbms, polysaccharide deacetylase involved in o-antigen PDBTitle: crystal structure of a putative polysaccharide deacetylase involved in2 o-antigen biosynthesis (wbms, bb0128) from bordetella bronchiseptica3 at 1.90 a resolution 55 c1qunA_ not modelled 19.2 11 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 56 d1lgta2 not modelled 19.1 29 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 57 d1aoza2 not modelled 19.1 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 58 c1sddA_ not modelled 17.0 11 PDB header:blood clotting Chain: A: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai 59 d2je8a3 not modelled 16.4 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 60 c3qbtH_ not modelled 15.6 18 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 61 d1kula_ not modelled 15.0 16 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:Starch-binding domain 62 c2x3bB_ not modelled 14.7 22 PDB header:hydrolase Chain: B: PDB Molecule:toxic extracellular endopeptidase; PDBTitle: asap1 inactive mutant e294a, an extracellular toxic zinc2 metalloendopeptidase 63 c2wo4A_ not modelled 13.9 22 PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase, family 9; PDBTitle: 3b' carbohydrate-binding module from the cel9v glycoside2 hydrolase from clostridium thermocellum, in-house data 64 d1nqjb_ not modelled 13.6 11 Fold:CUB-like Superfamily:Collagen-binding domain Family:Collagen-binding domain 65 d1f1ua2 not modelled 13.5 20 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 66 c2l0dA_ not modelled 13.1 9 PDB header:cell adhesion Chain: A: PDB Molecule:cell surface protein; PDBTitle: solution nmr structure of putative cell surface protein ma_4588 (272-2 376 domain) from methanosarcina acetivorans, northeast structural3 genomics consortium target mvr254a 67 c3zx1A_ not modelled 12.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, putative; PDBTitle: multicopper oxidase from campylobacter jejuni: a metallo-oxidase 68 d1m1sa_ not modelled 12.7 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 69 d2vzsa1 not modelled 12.5 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 70 d1uura2 not modelled 12.0 6 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:STAT DNA-binding domain 71 c1yewI_ not modelled 11.6 16 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 72 d1f1xa2 not modelled 11.6 13 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 73 d1ex0a2 not modelled 11.5 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 74 d2je8a2 not modelled 11.4 0 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 75 d1jzga_ not modelled 11.1 3 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 76 d1e42a1 not modelled 11.0 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 77 d2k5qa1 not modelled 10.7 23 Fold:OB-fold Superfamily:BC4932-like Family:BC4932-like 78 d1ifra_ not modelled 10.6 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 79 d1nwpa_ not modelled 10.4 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 80 d1mpya1 not modelled 10.3 14 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 81 c3gekA_ not modelled 10.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioesterase yhda; PDBTitle: crystal structure of putative thioesterase yhda from lactococcus2 lactis. northeast structural genomics consortium target kr113 82 c2lllA_ not modelled 10.1 11 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 83 c2h47C_ not modelled 9.9 3 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:azurin; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 84 d1h6ya_ not modelled 9.4 11 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:CBM22 85 d1azca_ not modelled 9.4 3 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 86 c2r39A_ not modelled 9.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus 87 d2j5wa1 not modelled 9.2 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 88 c2opkC_ not modelled 9.2 23 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 89 c1qpxA_ not modelled 9.2 10 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 90 d3eipa_ not modelled 8.9 13 Fold:FKBP-like Superfamily:Colicin E3 immunity protein Family:Colicin E3 immunity protein 91 d1q38a_ not modelled 8.9 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 92 c2h7fX_ not modelled 8.9 9 PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna 93 d1f53a_ not modelled 8.7 33 Fold:gamma-Crystallin-like Superfamily:gamma-Crystallin-like Family:Killer toxin-like protein SKLP 94 d1cc3a_ not modelled 8.6 7 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 95 c3qhtD_ not modelled 8.6 21 PDB header:de novo protein Chain: D: PDB Molecule:monobody ysmb-1; PDBTitle: crystal structure of the monobody ysmb-1 bound to yeast sumo 96 c1cyxA_ not modelled 8.6 26 PDB header:electron transport Chain: A: PDB Molecule:cyoa; PDBTitle: quinol oxidase (periplasmic fragment of subunit ii with2 engineered cu-a binding site)(cyoa) 97 d1cyxa_ not modelled 8.6 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 98 d2ccwa1 not modelled 8.5 4 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 99 c2rk0B_ not modelled 8.3 14 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase domain; PDBTitle: crystal structure of glyoxylase/bleomycin resistance2 protein/dioxygenase domain from frankia sp. ean1pec

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0