Email l.a.kelley@imperial.ac.uk Description P60340 Date Thu Jan 5 12:06:43 GMT 2012 Unique Job ID 1178dd69661e9c4d

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1k8wA_ 100.0 100 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 2 d1k8wa5 100.0 100 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 3 d1r3ea2 100.0 33 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 4 c1sgvA_ 100.0 32 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 5 c2ey4A_ 100.0 29 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 6 c3uaiA_ 100.0 28 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 7 c2apoA_ 100.0 31 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 8 d2ey4a2 100.0 32 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 9 d1sgva2 100.0 37 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 10 c1ze2B_ 100.0 29 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 11 d2apoa2 100.0 32 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 12 c2omlA_ 99.2 20 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 13 d1k8wa3 99.1 100 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 14 c2olwB_ 98.9 20 PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 15 c2v9kA_ 98.3 17 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein flj32312; PDBTitle: crystal structure of human pus10, a novel pseudouridine2 synthase. 16 d1vioa1 98.2 23 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 17 c2gmlA_ 98.1 22 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf 18 c3dh3C_ 98.1 18 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 19 d1kska4 98.0 19 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 20 c1vioA_ 97.7 24 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 21 d1v9ka_ not modelled 97.5 20 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 22 c3zv0D_ not modelled 97.5 19 PDB header:cell cycle Chain: D: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1p-cbf5p complex 23 c2i82D_ not modelled 97.4 17 PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure 24 c1kskA_ not modelled 97.3 21 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 25 c1qyuA_ not modelled 97.3 24 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud 26 d1v9fa_ not modelled 97.3 23 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 27 c1v9fA_ not modelled 97.3 23 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli 28 d2apoa1 not modelled 95.5 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 29 d1r3ea1 not modelled 93.5 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 30 d2ey4a1 not modelled 93.1 13 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 31 d1sgva1 not modelled 90.2 18 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 32 c1q7hA_ not modelled 75.1 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of a conserved pua domain protein from thermoplasma2 acidophilum 33 c3d79A_ not modelled 74.1 19 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph0734; PDBTitle: crystal structure of hypothetical protein ph0734.1 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 34 d1iq8a3 not modelled 73.3 16 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 35 d2as0a1 not modelled 68.7 21 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 36 c1sb7A_ not modelled 67.7 12 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase d; PDBTitle: crystal structure of the e.coli pseudouridine synthase trud 37 d1szwa_ not modelled 67.5 10 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:tRNA pseudouridine synthase TruD 38 d2b78a1 not modelled 59.6 12 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 39 c2b78A_ not modelled 57.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein smu.776; PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans 40 d1q7ha1 not modelled 54.4 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 41 c3r90E_ not modelled 50.6 11 PDB header:rna binding protein Chain: E: PDB Molecule:malignant t cell-amplified sequence 1; PDBTitle: crystal structure of malignant t cell-amplified sequence 1 protein 42 c1zs7A_ not modelled 44.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ape0525; PDBTitle: the structure of gene product ape0525 from aeropyrum pernix 43 c2gagC_ not modelled 37.2 15 PDB header:oxidoreductase Chain: C: PDB Molecule:heterotetrameric sarcosine oxidase gamma-subunit; PDBTitle: heteroteterameric sarcosine: structure of a diflavin metaloenzyme at2 1.85 a resolution 44 c2frxD_ not modelled 35.0 21 PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli 45 c3m4xA_ not modelled 34.6 18 PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase 46 c2xzmW_ not modelled 34.4 23 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 47 c2hjgA_ not modelled 29.6 8 PDB header:hydrolase Chain: A: PDB Molecule:gtp-binding protein enga; PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp 48 d2a2pa1 not modelled 28.4 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 49 d2jn9a1 not modelled 28.2 9 Fold:Split barrel-like Superfamily:YkvR-like Family:YkvR-like 50 d1o7qa_ not modelled 24.8 21 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:alpha-1,3-galactosyltransferase-like 51 d2cx1a1 not modelled 22.1 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 52 d1lzia_ not modelled 21.7 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:alpha-1,3-galactosyltransferase-like 53 d2gx8a1 not modelled 21.5 17 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 54 c1z2zB_ not modelled 18.9 16 PDB header:lyase Chain: B: PDB Molecule:probable trna pseudouridine synthase d; PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1 55 d1mkya3 not modelled 18.9 3 Fold:Alpha-lytic protease prodomain-like Superfamily:Probable GTPase Der, C-terminal domain Family:Probable GTPase Der, C-terminal domain 56 c2gx8B_ not modelled 18.3 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3 57 d1k7ia2 not modelled 16.6 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 58 c3czxA_ not modelled 15.3 50 PDB header:hydrolase Chain: A: PDB Molecule:putative n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of the putative n-acetylmuramoyl-l-2 alanine amidase from neisseria meningitidis 59 d1g9ka2 not modelled 14.5 39 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 60 c1mkyA_ not modelled 14.3 3 PDB header:ligand binding protein Chain: A: PDB Molecule:probable gtp-binding protein enga; PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains 61 c3m6wA_ not modelled 13.7 22 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine 62 c3or5A_ not modelled 13.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein, thioredoxin family PDBTitle: crystal structure of thiol:disulfide interchange protein, thioredoxin2 family protein from chlorobium tepidum tls 63 c3eykA_ not modelled 13.2 15 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin ha1 chain; PDBTitle: structure of influenza haemagglutinin in complex with an2 inhibitor of membrane fusion 64 c3cmiA_ not modelled 11.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin hyr1; PDBTitle: crystal structure of glutathione-dependent phospholipid peroxidase2 hyr1 from the yeast saccharomyces cerevisiae 65 c1iq8B_ not modelled 11.5 16 PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii 66 c2nydB_ not modelled 11.5 13 PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388 67 d1sata2 not modelled 11.3 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 68 d3saka_ not modelled 11.1 29 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 69 c2owlA_ not modelled 10.0 12 PDB header:recombination Chain: A: PDB Molecule:recombination-associated protein rdgc; PDBTitle: crystal structure of e. coli rdgc 70 c3ne8A_ not modelled 10.0 50 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of a domain from n-acetylmuramoyl-l-alanine2 amidase of bartonella henselae str. houston-1 71 d1muga_ not modelled 9.1 19 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like 72 c3kbgA_ not modelled 9.0 15 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 73 c2d07A_ not modelled 8.8 16 PDB header:hydrolase Chain: A: PDB Molecule:g/t mismatch-specific thymine dna glycosylase; PDBTitle: crystal structure of sumo-3-modified thymine-dna glycosylase 74 d1jwqa_ not modelled 8.3 50 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like 75 d2gy9i1 not modelled 8.3 18 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 76 c1yp3C_ not modelled 7.7 24 PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp 77 c2xs4A_ not modelled 7.4 28 PDB header:hydrolase Chain: A: PDB Molecule:karilysin protease; PDBTitle: structure of karilysin catalytic mmp domain in complex with2 magnesium 78 d1xova2 not modelled 7.3 29 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like 79 c1pk1B_ not modelled 7.3 12 PDB header:transcription repression Chain: B: PDB Molecule:sex comb on midleg cg9495-pa; PDBTitle: hetero sam domain structure of ph and scm. 80 d1hv5a_ not modelled 7.3 26 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 81 c1mszA_ not modelled 7.3 21 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein smubp-2; PDBTitle: solution structure of the r3h domain from human smubp-2 82 d1msza_ not modelled 7.3 21 Fold:IF3-like Superfamily:R3H domain Family:R3H domain 83 c2vn1A_ not modelled 7.1 13 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 84 d1cgla_ not modelled 7.0 22 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 85 c3lfmA_ not modelled 7.0 46 PDB header:oxidoreductase Chain: A: PDB Molecule:protein fto; PDBTitle: crystal structure of the fat mass and obesity associated (fto) protein2 reveals basis for its substrate specificity 86 d1bqqm_ not modelled 7.0 32 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 87 d1g0da2 not modelled 6.8 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 88 d1nmpa_ not modelled 6.7 6 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 89 d2fg9a1 not modelled 6.6 19 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 90 d1s1qa_ not modelled 6.6 18 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 91 c3eytA_ not modelled 6.6 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 92 c2e1cA_ not modelled 6.4 16 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 93 d2ovxa1 not modelled 6.2 22 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 94 d2b5xa1 not modelled 6.2 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 95 c2obiA_ not modelled 6.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:phospholipid hydroperoxide glutathione PDBTitle: crystal structure of the selenocysteine to cysteine mutant2 of human phospholipid hydroperoxide glutathione peroxidase3 (gpx4) 96 d1nkva_ not modelled 6.0 8 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical Protein YjhP 97 d1r9ha_ not modelled 5.8 16 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 98 c2l4bA_ not modelled 5.7 24 PDB header:transferase Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a 99 c3iz6D_ not modelled 5.7 14 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome