Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	V	L	G	I	E	T	S	C	D	E	T	G	I	A	I	Y	D	D	E	K	G	L	L	A	N	Q	L	Y	S	Q	V	K	L	H	A	D	Y	G	G	V	V	P	E	L	A	S	R	D	H	V	R	K	T	V	P	L	I	Q
Secondary structure
SS confidence
Disorder		?	?																													?			?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	A	L	K	E	S	G	L	T	A	K	D	I	D	A	V	A	Y	T	A	G	P	G	L	V	G	A	L	L	V	G	A	T	V	G	R	S	L	A	F	A	W	D	V	P	A	I	P	V	H	H	M	E	G	H	L	L	A	P	M
Secondary structure
SS confidence
Disorder																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	E	D	N	P	P	E	F	P	F	V	A	L	L	V	S	G	G	H	T	Q	L	I	S	V	T	G	I	G	Q	Y	E	L	L	G	E	S	I	D	D	A	A	G	E	A	F	D	K	T	A	K	L	L	G	L	D	Y	P	G	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	L	L	S	K	M	A	A	Q	G	T	A	G	R	F	V	F	P	R	P	M	T	D	R	P	G	L	D	F	S	F	S	G	L	K	T	F	A	A	N	T	I	R	D	N	G	T	D	D	Q	T	R	A	D	I	A	R	A	F	E
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	A	V	V	D	T	L	M	I	K	C	K	R	A	L	D	Q	T	G	F	K	R	L	V	M	A	G	G	V	S	A	N	R	T	L	R	A	K	L	A	E	M	M	K	K	R	R	G	E	V	F	Y	A	R	P	E	F	C	T	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Sequence		N	G	A	M	I	A	Y	A	G	M	V	R	F	K	A	G	A	T	A	D	L	G	V	S	V	R	P	R	W	P	L	A	E	L	P	A	A
Secondary structure
SS confidence
Disorder																?	?	?	?													?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3en9 chain B Region: 1 - 337 Aligned: 318 Modelled: 333 Confidence: 100.0% Identity: 32% PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein Phyre2 PDB 2ivo chain C Region: 1 - 336 Aligned: 321 Modelled: 336 Confidence: 100.0% Identity: 36% PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Phyre2 PDB 3eno chain B Region: 1 - 337 Aligned: 322 Modelled: 337 Confidence: 100.0% Identity: 33% PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 Phyre2 PDB 3tsu chain A Region: 3 - 317 Aligned: 278 Modelled: 301 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate Phyre2 PDB 1okj chain B Region: 1 - 229 Aligned: 207 Modelled: 212 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protease yeaz; PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma" Phyre2 PDB 1hux chain A Region: 1 - 317 Aligned: 257 Modelled: 280 Confidence: 99.9% Identity: 19% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 3r6m chain D Region: 2 - 169 Aligned: 150 Modelled: 151 Confidence: 99.9% Identity: 23% PDB header:hydrolase Chain: D: PDB Molecule:yeaz, resuscitation promoting factor; PDBTitle: crystal structure of vibrio parahaemolyticus yeaz Phyre2 PDB 1okj chain A domain 1 Region: 2 - 124 Aligned: 106 Modelled: 106 Confidence: 99.8% Identity: 26% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: YeaZ-like Phyre2 PDB 2a6a chain B Region: 1 - 172 Aligned: 150 Modelled: 154 Confidence: 99.8% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein tm0874; PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution Phyre2 PDB 2a6a chain A domain 1 Region: 1 - 119 Aligned: 101 Modelled: 101 Confidence: 99.7% Identity: 27% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: YeaZ-like Phyre2 PDB 2ews chain A domain 1 Region: 1 - 315 Aligned: 254 Modelled: 283 Confidence: 99.7% Identity: 17% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Fumble-like Phyre2 PDB 3h1q chain B Region: 2 - 310 Aligned: 243 Modelled: 265 Confidence: 99.0% Identity: 14% PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans Phyre2 PDB 3hz6 chain A Region: 1 - 322 Aligned: 307 Modelled: 308 Confidence: 98.9% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum Phyre2 PDB 3ifr chain B Region: 2 - 332 Aligned: 304 Modelled: 322 Confidence: 98.9% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum Phyre2 PDB 2zf5 chain O Region: 1 - 322 Aligned: 305 Modelled: 319 Confidence: 98.7% Identity: 18% PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon Phyre2 PDB 3g25 chain B Region: 2 - 322 Aligned: 299 Modelled: 319 Confidence: 98.7% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. Phyre2 PDB 2e2p chain A Region: 1 - 316 Aligned: 280 Modelled: 295 Confidence: 98.6% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp Phyre2 PDB 2cgk chain B Region: 1 - 322 Aligned: 303 Modelled: 318 Confidence: 98.6% Identity: 14% PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. Phyre2 PDB 2dpn chain B Region: 2 - 323 Aligned: 304 Modelled: 314 Confidence: 98.6% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 Phyre2 PDB 3gbt chain A Region: 1 - 322 Aligned: 301 Modelled: 321 Confidence: 98.6% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus Phyre2 1 c3en9B_ 2 c2ivoC_ 3 c3enoB_ 4 c3tsuA_ 5 c1okjB_ 6 d1huxa_ 7 c3r6mD_ 8 d1okja1 9 c2a6aB_ 10 d2a6aa1 11 d2ewsa1 12 c3h1qB_ 13 c3hz6A_ 14 c3ifrB_ 15 c2zf5O_ 16 c3g25B_ 17 c2e2pA_ 18 c2cgkB_ 19 c2dpnB_ 20 c3gbtA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3en9B_ 100.0 32 PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein 2 c2ivoC_ 100.0 36 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 3 c3enoB_ 100.0 33 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 4 c3tsuA_ 100.0 24 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 5 c1okjB_ 99.9 19 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protease yeaz; PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma" 6 d1huxa_ 99.9 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 7 c3r6mD_ 99.9 23 PDB header:hydrolase Chain: D: PDB Molecule:yeaz, resuscitation promoting factor; PDBTitle: crystal structure of vibrio parahaemolyticus yeaz 8 d1okja1 99.8 26 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 9 c2a6aB_ 99.8 23 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein tm0874; PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution 10 d2a6aa1 99.7 27 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:YeaZ-like 11 d2ewsa1 99.7 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 12 c3h1qB_ 99.0 14 PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans 13 c3hz6A_ 98.9 21 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 14 c3ifrB_ 98.9 22 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 15 c2zf5O_ 98.7 18 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 16 c3g25B_ 98.7 15 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 17 c2e2pA_ 98.6 14 PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp 18 c2cgkB_ 98.6 14 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 19 c2dpnB_ 98.6 20 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 20 c3gbtA_ 98.6 17 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 21 c3eo3B_ not modelled 98.6 12 PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein 22 c1sazA_ not modelled 98.5 16 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 23 c2ap1A_ not modelled 98.5 18 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 24 c2aa4B_ not modelled 98.5 13 PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium 25 c3cqyA_ not modelled 98.5 14 PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1 26 c2qm1D_ not modelled 98.4 15 PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis 27 c2d4wA_ not modelled 98.4 21 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 28 c2ch5D_ not modelled 98.3 11 PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine 29 c1glbG_ not modelled 98.2 14 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 30 c3gg4B_ not modelled 98.2 14 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 31 c3smpA_ not modelled 98.1 16 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 1; PDBTitle: monoclinic crystal structure of human pantothenate kinase 1 alpha 32 c1zc6A_ not modelled 98.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. 33 c3flcX_ not modelled 98.0 20 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 34 d2i7na2 not modelled 97.9 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 35 c3qbwA_ not modelled 97.9 19 PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate 36 c1z6rC_ not modelled 97.9 16 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 37 c1z05A_ not modelled 97.9 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 38 c2nlxA_ not modelled 97.8 23 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase 39 d2i7pa1 not modelled 97.8 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 40 c3ezwD_ not modelled 97.8 17 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 41 c2i7pA_ not modelled 97.8 13 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 3; PDBTitle: crystal structure of human pank3 in complex with accoa 42 d2p3ra2 not modelled 97.7 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 43 c1mwmA_ not modelled 97.7 14 PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form 44 c2gupA_ not modelled 97.6 12 PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose 45 c1zbsA_ not modelled 97.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg1100; PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18 46 c3htvA_ not modelled 97.5 14 PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution 47 c2w40C_ not modelled 97.4 14 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 48 c2v7yA_ not modelled 97.3 17 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state 49 d1saza1 not modelled 97.3 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 50 c3i8bA_ not modelled 97.2 16 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis 51 c1tuuA_ not modelled 97.2 17 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 52 c3r8eA_ not modelled 97.2 12 PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution 53 c2iirJ_ not modelled 97.2 16 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 54 d1r59o2 not modelled 97.2 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 55 c2d0oA_ not modelled 97.2 16 PDB header:chaperone Chain: A: PDB Molecule:diol dehydratase-reactivating factor large PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+ 56 d1jcea2 not modelled 97.1 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 57 c3iucC_ not modelled 97.1 12 PDB header:chaperone Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp 58 c1zxoB_ not modelled 97.0 8 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1; PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25. 59 c1xupO_ not modelled 97.0 22 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol 60 c3vgkB_ not modelled 97.0 10 PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus 61 d1bupa2 not modelled 97.0 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 62 c2v7zA_ not modelled 97.0 14 PDB header:chaperone Chain: A: PDB Molecule:heat shock cognate 71 kda protein; PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state 63 c1x3nA_ not modelled 96.9 16 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 64 d2e8aa2 not modelled 96.7 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 65 c2hoeA_ not modelled 96.6 12 PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution 66 d2zgya2 not modelled 96.6 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 67 c3jvpA_ not modelled 96.5 20 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 68 c1dkgD_ not modelled 96.5 22 PDB header:complex (hsp24/hsp70) Chain: D: PDB Molecule:molecular chaperone dnak; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak 69 c1xc3A_ not modelled 96.4 11 PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis 70 d1dkgd2 not modelled 96.4 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 71 c1e4gT_ not modelled 96.3 9 PDB header:bacterial cell division Chain: T: PDB Molecule:cell division protein ftsa; PDBTitle: ftsa (atp-bound form) from thermotoga maritima 72 d2p3ra1 not modelled 96.2 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 73 c2khoA_ not modelled 95.7 20 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate 74 d1zc6a1 not modelled 95.6 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 75 c3js6A_ not modelled 95.5 10 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized parm protein; PDBTitle: crystal structure of apo psk41 parm protein 76 c3d2fC_ not modelled 95.4 15 PDB header:chaperone Chain: C: PDB Molecule:heat shock protein homolog sse1; PDBTitle: crystal structure of a complex of sse1p and hsp70 77 c1woqB_ not modelled 95.3 15 PDB header:transferase Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase; PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution 78 d1e4ft2 not modelled 94.7 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 79 d2ch5a2 not modelled 94.7 10 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 80 c1hpmA_ not modelled 94.6 20 PDB header:hydrolase (acting on acid anhydrides) Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat- PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site 81 c1jcgA_ not modelled 94.5 9 PDB header:structural protein Chain: A: PDB Molecule:rod shape-determining protein mreb; PDBTitle: mreb from thermotoga maritima, amppnp 82 d2ch5a1 not modelled 94.0 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 83 d2fsja1 not modelled 92.5 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ta0583-like 84 c3p4iA_ not modelled 92.1 21 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium 85 c1o1f4_ not modelled 92.0 10 PDB header:contractile protein Chain: 4: PDB Molecule:skeletal muscle actin; PDBTitle: molecular models of averaged rigor crossbridges from2 tomograms of insect flight muscle 86 d2gupa2 not modelled 91.6 5 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 87 d2ap1a1 not modelled 91.6 27 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 88 d2aa4a2 not modelled 91.2 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 89 d1z6ra2 not modelled 90.9 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 90 c1tqyD_ not modelled 90.7 22 PDB header:transferase Chain: D: PDB Molecule:actinorhodin polyketide putative beta-ketoacyl synthase 2; PDBTitle: the actinorhodin ketosynthase/chain length factor 91 d1r59o1 not modelled 89.5 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 92 d2hoea2 not modelled 88.9 10 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 93 d1tqyb2 not modelled 88.6 22 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 94 d1u6ea2 not modelled 88.6 14 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 95 d1e5ma2 not modelled 87.5 21 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 96 d2hoea3 not modelled 87.0 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 97 d1m3ka1 not modelled 86.9 10 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 98 c2iwyB_ not modelled 86.6 17 PDB header:transferase Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase; PDBTitle: human mitochondrial beta-ketoacyl acp synthase 99 d1vhxa_ not modelled 86.1 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 100 c1e5mA_ not modelled 86.0 21 PDB header:condensing enzyme Chain: A: PDB Molecule:beta ketoacyl acyl carrier protein synthase ii; PDBTitle: beta ketoacyl acyl carrier protein synthase ii (kasii) from2 synechocystis sp. 101 c2gqdB_ not modelled 85.3 23 PDB header:transferase Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 2; PDBTitle: the crystal structure of b-ketoacyl-acp synthase ii (fabf)2 from staphylococcus aureus 102 c2iikA_ not modelled 85.2 12 PDB header:transferase Chain: A: PDB Molecule:3-ketoacyl-coa thiolase, peroxisomal; PDBTitle: crystal structure of human peroxisomal acetyl-coa acyl transferase 12 (acaa1) 103 c3dwlB_ not modelled 85.2 10 PDB header:structural protein Chain: B: PDB Molecule:actin-related protein 3; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 104 d2aa4a1 not modelled 85.1 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 105 d1g99a1 not modelled 84.8 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 106 d2gfva2 not modelled 84.2 23 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 107 c2gfvA_ not modelled 83.4 23 PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 2; PDBTitle: structure of e. coli fabf (kasii) c163q mutant 108 c3o04A_ not modelled 83.0 15 PDB header:transferase Chain: A: PDB Molecule:beta-keto-acyl carrier protein synthase ii; PDBTitle: crystal structure of the beta-keto-acyl carrier protein synthase ii2 (lmo2201) from listeria monocytogenes 109 d1j3na2 not modelled 83.0 17 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 110 c1oxhD_ not modelled 82.8 18 PDB header:transferase Chain: D: PDB Molecule:beta ketoacyl-acyl carrier protein synthase; PDBTitle: the crystal structure of beta-ketoacyl-[acyl carrier2 protein] synthase ii from streptococcus pneumoniae,3 triclinic form 111 d1z05a3 not modelled 82.7 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 112 c3e60A_ not modelled 82.4 23 PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein ] synthase ii; PDBTitle: crystal structure of 3-oxoacyl-(acyl carrier protein)2 synthase ii from bartonella henselae 113 c2ychA_ not modelled 82.3 18 PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex 114 c1tqyC_ not modelled 81.6 27 PDB header:transferase Chain: C: PDB Molecule:beta-ketoacyl synthase/acyl transferase; PDBTitle: the actinorhodin ketosynthase/chain length factor 115 d1ox0a2 not modelled 81.5 18 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 116 d1ub7a2 not modelled 81.5 16 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 117 c2gp6B_ not modelled 81.3 18 PDB header:transferase Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 2; PDBTitle: x-ray crystal structure of mycobacterium tuberculosis beta-2 ketoacyl acyl carrier protein synthase ii (mtkasb) 118 d1xc3a2 not modelled 81.0 9 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 119 c2wggA_ not modelled 80.8 18 PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 1; PDBTitle: crystal structure of mycobacterium tuberculosis c171q kasa2 variant with bound tlm 120 d2ix4a2 not modelled 80.8 23 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0