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 Protein Homology/analogY Recognition Engine V 2.0


New fold library entries added 2017 Jul 15

Fold library idPDB HeaderMoleculeTitle
c5vmdA_ 2.20 ligase Chain: A: f-box only protein 11;
c5m8pA_ 2.80 unknown function Chain: A: 5,6-dihydroxyindole-2-carboxylic acid oxidase;
c5vknA_ 3.00 transport protein Chain: A: potassium channel subfamily k member 2;
c5gkkA_ 2.00 hydrolase Chain: A: putative homing endonuclease;
c5o60T_ 3.20 ribosome Chain: T: 50s ribosomal protein l22;
c5givD_ 2.40 hydrolase Chain: D: carboxypeptidase 1;
c5vj2B_ 2.22 viral protein Chain: B: non-structural protein 1;
c5w8pA_ 1.69 transferase Chain: A: homoserine o-acetyltransferase;
c5tzbA_ 1.98 hydrolase Chain: A: d-aminopeptidase;
c5uyvA_ 1.69 metal transport Chain: A: periplasmic chelated iron-binding protein yfea;
c5uiyA_ 1.69 transcription Chain: A: bromodomain adjacent to zinc finger domain protein 1a;
c5xoxD_ 3.00 transferase Chain: D: trna(his) guanylyltransferase;
c5n77A_ 2.80 transport protein Chain: A: magnesium transport protein cora;
c5lacB_ 1.94 hydrolase Chain: B: 3cl protease;
c5kqwD_ 2.23 transferase Chain: D: 4-aminobutyrate transaminase;
c5vrhA_ 2.14 transferase Chain: A: apolipoprotein n-acyltransferase;
c5nxfB_ 1.90 viral protein Chain: B: long-tail fiber proximal subunit;
c5o5jT_ 3.45 ribosome Chain: T: 30s ribosomal protein s20;
c5o60b_ 3.20 ribosome Chain: B: 5s rrna;
c5xqiB_ 2.80 cell cycle Chain: B: protein rogdi homolog;
c5o60U_ 3.20 ribosome Chain: U: 50s ribosomal protein l23;
c5xvuA_ 3.00 transferase Chain: A: casein kinase 2, alpha subunit;
c5o60W_ 3.20 ribosome Chain: W: 50s ribosomal protein l25;
c5ld5C_ 2.19 oxidoreductase Chain: C: glyceraldehyde-3-phosphate dehydrogenase;
c5nxhB_ 2.89 viral protein Chain: B: long-tail fiber proximal subunit;
c5gweB_ 2.00 electron transport Chain: B: cytochrome p450;
c5kqoA_ 2.35 oxidoreductase Chain: A: 1-deoxy-d-xylulose 5-phosphate reductoisomerase;
c5gl7A_ 2.01 ligase Chain: A: methionine--trna ligase, cytoplasmic;
c5o60E_ 3.20 ribosome Chain: E: 50s ribosomal protein l4;
c5o5jO_ 3.45 ribosome Chain: O: 30s ribosomal protein s15;
c5w70B_ 2.10 transferase Chain: B: l-glutamine:2-deoxy-scyllo-inosose aminotransferase;
c5jqmB_ 1.50 transport protein Chain: B: protein ups1, mitochondrial,mitochondrial distribution and
c5o60c_ 3.20 ribosome Chain: C: 50s ribosomal protein l2;
c5o5jV_ 3.45 ribosome Chain: V: 30s ribosomal protein s2;
c5o60V_ 3.20 ribosome Chain: V: 50s ribosomal protein l24;
c5o5jH_ 3.45 ribosome Chain: H: 30s ribosomal protein s8;
c5mogB_ 2.77 oxidoreductase Chain: B: phytoene dehydrogenase, chloroplastic/chromoplastic;
c5o60O_ 3.20 ribosome Chain: O: 50s ribosomal protein l17;
c5gl6A_ 2.20 ribosomal protein Chain: A: ribosome maturation factor rimp;
c5o5jJ_ 3.45 ribosome Chain: J: 30s ribosomal protein s10;
c5o60d_ 3.20 ribosome Chain: D: 50s ribosomal protein l3;
c5oagB_ 2.48 hydrolase Chain: B: rab-3a-interacting protein;
c5n7kD_ 2.81 cell adhesion Chain: D: marvel domain-containing protein 2;
c5o603_ 3.20 ribosome Chain: 3: 50s ribosomal protein bl37;
c5vmdC_ 2.20 ligase Chain: C: f-box only protein 11;
c5o5jR_ 3.45 ribosome Chain: R: 30s ribosomal protein s18 2;
c5w54A_ UNK cytokine Chain: A: stress response peptide-2;
c5xadD_ 1.88 protein binding Chain: D: uncharacterised protein;
c5gp7A_ 1.50 transferase Chain: A: tankyrase-1;
c5gs8A_ 1.59 hydrolase Chain: A: beta-lactamase;
c5o60N_ 3.20 ribosome Chain: N: 50s ribosomal protein l16;
c5sv6A_ 1.92 unknown function Chain: A: extracellular solute-binding protein, family 3;
c5o5jG_ 3.45 ribosome Chain: G: 30s ribosomal protein s7;
c5o60e_ 3.20 ribosome Chain: E: 50s ribosomal protein l4;
c5o5jE_ 3.45 ribosome Chain: E: 30s ribosomal protein s5;
c5o60D_ 3.20 ribosome Chain: D: 50s ribosomal protein l3;
c5o5jM_ 3.45 ribosome Chain: M: 30s ribosomal protein s13;
c5xadC_ 1.88 protein binding Chain: C: uncharacterised protein;
c5o5jF_ 3.45 ribosome Chain: F: 30s ribosomal protein s6;
c5o5jK_ 3.45 ribosome Chain: K: 30s ribosomal protein s11;
c5o60Z_ 3.20 ribosome Chain: Z: 50s ribosomal protein l29;
c5o5jP_ 3.45 ribosome Chain: P: 30s ribosomal protein s16;
c5o5jD_ 3.45 ribosome Chain: D: 30s ribosomal protein s4;
c5o5jS_ 3.45 ribosome Chain: S: 30s ribosomal protein s19;
c5o60H_ 3.20 ribosome Chain: H: 50s ribosomal protein l9;
c5n6mA_ 3.10 membrane protein Chain: A: apolipoprotein n-acyltransferase;
c5o60I_ 3.20 ribosome Chain: I: 50s ribosomal protein l10;
c5o60Q_ 3.20 ribosome Chain: Q: 50s ribosomal protein l19;
c5o60Y_ 3.20 ribosome Chain: Y: 50s ribosomal protein l28;
c5xg5A_ 1.54 de novo protein Chain: A: mitsuba-1;
c5o60P_ 3.20 ribosome Chain: P: 50s ribosomal protein l18;
c5xeqB_ 3.14 cell adhesion Chain: B: mam domain-containing glycosylphosphatidylinositol anchor
c5o60K_ 3.20 ribosome Chain: K: 50s ribosomal protein l13;
c5kh1A_ 3.40 ligase Chain: A: invasion plasmid antigen;
c5o60R_ 3.20 ribosome Chain: R: 50s ribosomal protein l20;
c5o60g_ 3.20 ribosome Chain: G: 50s ribosomal protein l6;
c5o60J_ 3.20 ribosome Chain: J: 50s ribosomal protein l11;
c5vkyB_ 2.30 protein binding Chain: B: topoisomerase i damage affected protein 2;
c5o60F_ 3.20 ribosome Chain: F: 50s ribosomal protein l5;
c5glgA_ 1.80 oxidoreductase Chain: A: fumarate reductase 2;
c5o5jC_ 3.45 ribosome Chain: C: 30s ribosomal protein s3;
c5o60C_ 3.20 ribosome Chain: C: 50s ribosomal protein l2;
c5o60M_ 3.20 ribosome Chain: M: 50s ribosomal protein l15;
c5o60S_ 3.20 ribosome Chain: S: 50s ribosomal protein l21;
c5o5jI_ 3.45 ribosome Chain: I: 30s ribosomal protein s9;
c5o5jQ_ 3.45 ribosome Chain: Q: 30s ribosomal protein s17;
c5o5jB_ 3.45 ribosome Chain: B: conserved domain protein;
c5o60G_ 3.20 ribosome Chain: G: 50s ribosomal protein l6;
c5gkvA_ 1.90 hydrolase Chain: A: esterase a;
c5o60a_ 3.20 ribosome Chain: A: 23s rrna;
c5o60X_ 3.20 ribosome Chain: X: 50s ribosomal protein l27;

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Commercial users please contact Michael Sternberg

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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