Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP60430
DateTue Jul 17 17:05:11 BST 2012
Unique Job IDae3ba034564e9902

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3d5bD_
Top template information
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400.
Confidence and coverage
Confidence:100.0% Coverage: 97%
269 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAIKKYKPITNGRRNMTSLDFAEITKTTPEKSLLKPLPKKAGRNNQGKLTVRHHGGGHKR
Secondary structure 
SS confidence 
Disorder  ???????????????????
????
??
????????
?
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  QYRVIDFKRNKDGINAKVDSIQYDPNRSANIALVVYADGEKRYIIAPKGLEVGQIVESGA
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  EADIKVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVLGKEGKYVLIRLRSGE
Secondary structure 
SS confidence 
Disorder 
??
???
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  VRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAP
Secondary structure 
SS confidence 
Disorder 
?????
??????????
Disorder confidence 
 
   .........250.........260.........270.......
Sequence  IGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKKK
Secondary structure 
SS confidence 
Disorder  ??????
?
?????
???
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3d5b chain D

3D model

Region: 2 - 271
Aligned: 269
Modelled: 270
Confidence: 100.0%
Identity: 65%
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400.

Phyre2

PDB 2z4l chain C

3D model

Region: 2 - 275
Aligned: 271
Modelled: 274
Confidence: 100.0%
Identity: 58%
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l2;
PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with paromomycin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 first 70s ribosome, with paromomycin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400.

Phyre2

PDB 3bbo chain E

3D model

Region: 4 - 273
Aligned: 265
Modelled: 270
Confidence: 100.0%
Identity: 54%
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein l2;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome

Phyre2

PDB 2gya chain A

3D model

Region: 39 - 266
Aligned: 226
Modelled: 228
Confidence: 100.0%
Identity: 62%
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056

Phyre2

PDB 4a1c chain A

3D model

Region: 37 - 276
Aligned: 237
Modelled: 240
Confidence: 100.0%
Identity: 36%
PDB header:ribosome
Chain: A: PDB Molecule:rpl8;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.

Phyre2

PDB 2zkr chain A

3D model

Region: 35 - 264
Aligned: 226
Modelled: 226
Confidence: 100.0%
Identity: 36%
PDB header:ribosomal protein/rna
Chain: A: PDB Molecule:rna expansion segment es3;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map

Phyre2

PDB 1kqs chain A

3D model

Region: 47 - 264
Aligned: 217
Modelled: 218
Confidence: 100.0%
Identity: 39%
PDB header:ribosome
Chain: A: PDB Molecule:ribosomal protein l2;
PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis

Phyre2

PDB 2b66 chain D

3D model

Region: 61 - 233
Aligned: 173
Modelled: 173
Confidence: 100.0%
Identity: 68%
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l2;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400

Phyre2

PDB 2j01 chain D domain 1

3D model

Region: 126 - 271
Aligned: 145
Modelled: 146
Confidence: 100.0%
Identity: 63%
Fold: SH3-like barrel
Superfamily: Translation proteins SH3-like domain
Family: C-terminal domain of ribosomal protein L2

Phyre2

PDB 2zjr chain A domain 1

3D model

Region: 127 - 271
Aligned: 144
Modelled: 145
Confidence: 100.0%
Identity: 65%
Fold: SH3-like barrel
Superfamily: Translation proteins SH3-like domain
Family: C-terminal domain of ribosomal protein L2

Phyre2

PDB 2qam chain C domain 1

3D model

Region: 126 - 273
Aligned: 145
Modelled: 148
Confidence: 100.0%
Identity: 60%
Fold: SH3-like barrel
Superfamily: Translation proteins SH3-like domain
Family: C-terminal domain of ribosomal protein L2

Phyre2

PDB 1vqo chain A domain 1

3D model

Region: 127 - 264
Aligned: 137
Modelled: 138
Confidence: 100.0%
Identity: 39%
Fold: SH3-like barrel
Superfamily: Translation proteins SH3-like domain
Family: C-terminal domain of ribosomal protein L2

Phyre2

PDB 1rl2 chain A

3D model

Region: 61 - 196
Aligned: 136
Modelled: 136
Confidence: 100.0%
Identity: 75%
PDB header:ribosomal protein
Chain: A: PDB Molecule:protein (ribosomal protein l2);
PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus

Phyre2

PDB 2ftc chain B

3D model

Region: 78 - 209
Aligned: 131
Modelled: 132
Confidence: 100.0%
Identity: 40%
PDB header:ribosome
Chain: B: PDB Molecule:mitochondrial ribosomal protein l2;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome

Phyre2

PDB 2j01 chain D domain 2

3D model

Region: 2 - 125
Aligned: 124
Modelled: 124
Confidence: 100.0%
Identity: 68%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: Cold shock DNA-binding domain-like

Phyre2

PDB 2zjr chain A domain 2

3D model

Region: 33 - 126
Aligned: 94
Modelled: 94
Confidence: 100.0%
Identity: 66%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: Cold shock DNA-binding domain-like

Phyre2

PDB 1rl2 chain A domain 1

3D model

Region: 127 - 196
Aligned: 70
Modelled: 70
Confidence: 99.9%
Identity: 79%
Fold: SH3-like barrel
Superfamily: Translation proteins SH3-like domain
Family: C-terminal domain of ribosomal protein L2

Phyre2

PDB 1vqo chain A domain 2

3D model

Region: 36 - 126
Aligned: 89
Modelled: 91
Confidence: 99.9%
Identity: 31%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: Cold shock DNA-binding domain-like

Phyre2

PDB 1rl2 chain A domain 2

3D model

Region: 61 - 126
Aligned: 66
Modelled: 66
Confidence: 99.8%
Identity: 71%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: Cold shock DNA-binding domain-like

Phyre2

PDB 2qam chain C domain 2

3D model

Region: 62 - 125
Aligned: 64
Modelled: 64
Confidence: 99.8%
Identity: 67%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: Cold shock DNA-binding domain-like

Phyre2
1
c3d5bD_
2
c2z4lC_
3
c3bboE_
4
c2gyaA_
5
c4a1cA_
6
c2zkra_
7
c1kqsA_
8
c2b66D_
9
d2j01d1
10
d2zjra1
11
d2qamc1
12
d1vqoa1
13
c1rl2A_
14
c2ftcB_
15
d2j01d2
16
d2zjra2
17
d1rl2a1
18
d1vqoa2
19
d1rl2a2
20
d2qamc2
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3d5bD_
100.0 65 PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400.
2c2z4lC_
100.0 58 PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l2;
PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with paromomycin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 first 70s ribosome, with paromomycin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400.
3c3bboE_
100.0 54 PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein l2;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
4c2gyaA_
100.0 62 PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056
5c4a1cA_
100.0 36 PDB header:ribosome
Chain: A: PDB Molecule:rpl8;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
6c2zkra_
100.0 36 PDB header:ribosomal protein/rna
Chain: A: PDB Molecule:rna expansion segment es3;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
7c1kqsA_
100.0 39 PDB header:ribosome
Chain: A: PDB Molecule:ribosomal protein l2;
PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis
8c2b66D_
100.0 68 PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l2;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400
9d2j01d1
100.0 63 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
10d2zjra1
100.0 65 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
11d2qamc1
100.0 60 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
12d1vqoa1
100.0 39 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
13c1rl2A_
100.0 75 PDB header:ribosomal protein
Chain: A: PDB Molecule:protein (ribosomal protein l2);
PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus
14c2ftcB_
100.0 40 PDB header:ribosome
Chain: B: PDB Molecule:mitochondrial ribosomal protein l2;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
15d2j01d2
100.0 68 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
16d2zjra2
100.0 66 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
17d1rl2a1
99.9 79 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
18d1vqoa2
99.9 31 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
19d1rl2a2
99.8 71 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
20d2qamc2
99.8 67 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
21c3peiA_
not modelled 88.5 20 PDB header:hydrolase
Chain: A: PDB Molecule:cytosol aminopeptidase;
PDBTitle: crystal structure of cytosol aminopeptidase from francisella2 tularensis
22d2dy1a1
not modelled 81.8 23 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
23c3ij3A_
not modelled 68.1 26 PDB header:hydrolase
Chain: A: PDB Molecule:cytosol aminopeptidase;
PDBTitle: 1.8 angstrom resolution crystal structure of cytosol aminopeptidase2 from coxiella burnetii
24c1lanA_
not modelled 62.0 22 PDB header:hydrolase (alpha-aminoacylpeptide)
Chain: A: PDB Molecule:leucine aminopeptidase;
PDBTitle: leucine aminopeptidase complex with l-leucinal
25c3h8gC_
not modelled 54.2 22 PDB header:hydrolase
Chain: C: PDB Molecule:cytosol aminopeptidase;
PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida
26c3kzwD_
not modelled 48.1 21 PDB header:hydrolase
Chain: D: PDB Molecule:cytosol aminopeptidase;
PDBTitle: crystal structure of cytosol aminopeptidase from staphylococcus aureus2 col
27d2bv3a1
not modelled 46.0 24 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
28d1lama1
not modelled 43.7 22 Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Leucine aminopeptidase, C-terminal domain
29c3jruB_
not modelled 43.6 21 PDB header:hydrolase
Chain: B: PDB Molecule:probable cytosol aminopeptidase;
PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331
30c2jmzA_
not modelled 41.6 13 PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein mj0781;
PDBTitle: solution structure of a klba intein precursor from2 methanococcus jannaschii
31d2cqaa1
not modelled 36.4 23 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TIP49 domain
32d1ulva4
not modelled 34.6 21 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Bacterial glucoamylase N-terminal domain-like
33c1gytG_
not modelled 34.5 25 PDB header:hydrolase
Chain: G: PDB Molecule:cytosol aminopeptidase;
PDBTitle: e. coli aminopeptidase a (pepa)
34d1gyta2
not modelled 29.4 26 Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Leucine aminopeptidase, C-terminal domain
35c1x65A_
not modelled 27.5 27 PDB header:rna binding protein
Chain: A: PDB Molecule:unr protein;
PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein)
36c2kcyA_
not modelled 24.3 22 PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s8e;
PDBTitle: solution structure of ribosomal protein s8e from2 methanothermobacter thermautotrophicus,3 northeaststructural genomics consortium (nesg) target tr71d
37c2xzn2_
not modelled 21.4 28 PDB header:ribosome
Chain: 2: PDB Molecule:40s ribosomal protein s8;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
38c3u5cI_
not modelled 20.7 25 PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
39c4efdF_
not modelled 19.5 17 PDB header:hydrolase
Chain: F: PDB Molecule:aminopeptidase;
PDBTitle: crystal structure of an m17 aminopeptidase from trypanosoma brucei,2 tb427tmp.02.4440
40d2pi2e1
not modelled 19.2 21 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
41c2pqaB_
not modelled 18.8 21 PDB header:replication
Chain: B: PDB Molecule:replication protein a 14 kda subunit;
PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer
42c3d3rA_
not modelled 17.0 20 PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf;
PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
43c2ns2A_
not modelled 16.6 28 PDB header:cell cycle
Chain: A: PDB Molecule:spindlin-1;
PDBTitle: crystal structure of spindlin1
44d1lf6a2
not modelled 16.5 22 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Bacterial glucoamylase N-terminal domain-like
45c2j5uB_
not modelled 15.7 22 PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
46c3r6oA_
not modelled 14.5 25 PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase;
PDBTitle: crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7-2 dioateisomerase from mycobacterium abscessus
47c3f1zF_
not modelled 14.4 38 PDB header:dna binding protein
Chain: F: PDB Molecule:putative nucleic acid-binding lipoprotein;
PDBTitle: crystal structure of putative nucleic acid-binding lipoprotein2 (yp_001337197.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 2.46 a resolution
48c2jz8A_
not modelled 13.9 56 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bh09830;
PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55
49c1gycA_
not modelled 13.8 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase 2;
PDBTitle: crystal structure determination at room temperature of a2 laccase from trametes versicolor in its oxidised form3 containing a full complement of copper ions
50c2kkgA_
not modelled 13.0 48 PDB header:membrane protein
Chain: A: PDB Molecule:major prion protein;
PDBTitle: nmr structure of the octarepeat region of prion protein2 bound to pentosan polysulfate
51c2dfuB_
not modelled 12.6 28 PDB header:isomerase
Chain: B: PDB Molecule:probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from thermus thermophilus hb8
52d1yoxa1
not modelled 12.3 16 Fold:Double-stranded beta-helix
Superfamily:TRAP-like
Family:PA3696/SPS0176-like
53c1i7oC_
not modelled 11.7 26 PDB header:isomerase, lyase
Chain: C: PDB Molecule:4-hydroxyphenylacetate degradation bifunctional
PDBTitle: crystal structure of hpce
54c2cbjA_
not modelled 11.5 17 PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase;
PDBTitle: structure of the clostridium perfringens nagj family 842 glycoside hydrolase, a homologue of human o-glcnacase in3 complex with pugnac
55d1k28a3
not modelled 11.4 31 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
56d1g03a_
not modelled 11.2 71 Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
57c2kjpA_
not modelled 11.0 27 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ylbl;
PDBTitle: solution structure of protein ylbl (bsu15050) from bacillus2 subtilis, northeast structural genomics consortium target3 sr713a
58c4e2uA_
not modelled 10.7 12 PDB header:unknown function
Chain: A: PDB Molecule:pho rada intein;
PDBTitle: crystal structures of radamin intein from pyrococcus horikoshii
59c2kcoA_
not modelled 10.7 22 PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s8e;
PDBTitle: solution nmr structure of ribosomal protein sso0164 from2 sulfolobus solfataricus. northeast structural genomics3 consortium (nesg) target sst4.
60d3d3ra1
not modelled 10.6 19 Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
61d1sawa_
not modelled 10.1 18 Fold:FAH
Superfamily:FAH
Family:FAH
62d1hxma2
not modelled 9.8 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
63d1s3sg_
not modelled 9.7 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:UBX domain
64c1wzoC_
not modelled 9.4 21 PDB header:isomerase
Chain: C: PDB Molecule:hpce;
PDBTitle: crystal structure of the hpce from thermus thermophilus hb8
65d1o6aa_
not modelled 8.9 11 Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
66d1i42a_
not modelled 8.8 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:UBX domain
67c3a5zF_
not modelled 8.8 31 PDB header:ligase
Chain: F: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p
68c2hbpA_
not modelled 8.7 11 PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1;
PDBTitle: solution structure of sla1 homology domain 1
69c2knrA_
not modelled 8.5 32 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atc0905;
PDBTitle: solution structure of protein atu0922 from a. tumefaciens. northeast2 structural genomics consortium target att13. ontario center for3 structural proteomics target atc0905
70d1o9ya_
not modelled 8.4 13 Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
71d1q1ca2
not modelled 8.2 17 Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
72c3j1aE_
not modelled 8.0 63 PDB header:virus
Chain: E: PDB Molecule:capsid protein;
PDBTitle: hk97-like fold fitted into 3d reconstruction of bacteriophage cw02
73c2qx2A_
not modelled 7.9 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sex pheromone staph-cam373;
PDBTitle: structure of the c-terminal domain of sex pheromone staph-cam3732 precursor from staphylococcus aureus
74c2jy9A_
not modelled 7.7 24 PDB header:hydrolase
Chain: A: PDB Molecule:putative trna hydrolase domain;
PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220
75d1m06g_
not modelled 7.5 17 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:ssDNA viruses
Family:Microviridae-like VP
76c2q1dX_
not modelled 7.5 19 PDB header:lyase
Chain: X: PDB Molecule:2-keto-3-deoxy-d-arabinonate dehydratase;
PDBTitle: 2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and2 2,5-dioxopentanoate
77c2hc9A_
not modelled 7.5 17 PDB header:hydrolase
Chain: A: PDB Molecule:leucine aminopeptidase 1;
PDBTitle: structure of caenorhabditis elegans leucine aminopeptidase-zinc2 complex (lap1)
78d1gtta2
not modelled 7.5 24 Fold:FAH
Superfamily:FAH
Family:FAH
79d1gtta1
not modelled 7.4 14 Fold:FAH
Superfamily:FAH
Family:FAH
80d1c9ha_
not modelled 7.4 22 Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
81c2dzkA_
not modelled 7.2 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubx domain-containing protein 2;
PDBTitle: structure of the ubx domain in mouse ubx domain-containing2 protein 2
82c2k4yA_
not modelled 7.2 23 PDB header:metal transport
Chain: A: PDB Molecule:feoa-like protein;
PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178
83d2cr5a1
not modelled 7.2 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:UBX domain
84c3kr5E_
not modelled 7.2 24 PDB header:hydrolase
Chain: E: PDB Molecule:m17 leucyl aminopeptidase;
PDBTitle: structure of a protease 4
85c3j0cH_
not modelled 7.1 16 PDB header:virus
Chain: H: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map
86c3lzkC_
not modelled 7.0 22 PDB header:hydrolase
Chain: C: PDB Molecule:fumarylacetoacetate hydrolase family protein;
PDBTitle: the crystal structure of a probably aromatic amino acid2 degradation protein from sinorhizobium meliloti 1021
87c2qf4A_
not modelled 6.9 27 PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
88c3l0wB_
not modelled 6.7 18 PDB header:replication
Chain: B: PDB Molecule:monoubiquitinated proliferating cell nuclear
PDBTitle: structure of split monoubiquitinated pcna with ubiquitin in2 position two
89c3uepB_
not modelled 6.7 13 PDB header:protein transport
Chain: B: PDB Molecule:yscq-c, type iii secretion protein;
PDBTitle: crystal structure of yscq-c from yersinia pseudotuberculosis
90c3hshA_
not modelled 6.6 18 PDB header:protein binding
Chain: A: PDB Molecule:collagen alpha-1(xviii) chain;
PDBTitle: crystal structure of human collagen xviii trimerization domain2 (tetragonal crystal form)
91d2ibaa2
not modelled 6.4 43 Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:Urate oxidase (uricase)
92d1gff2_
not modelled 6.4 26 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:ssDNA viruses
Family:Microviridae-like VP
93d1dq3a1
not modelled 6.3 15 Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Intein (protein splicing domain)
94c2zkqm_
not modelled 6.3 23 PDB header:ribosomal protein/rna
Chain: M: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
95c3mhxB_
not modelled 6.1 18 PDB header:metal transport
Chain: B: PDB Molecule:putative ferrous iron transport protein a;
PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor
96d2d6fa1
not modelled 6.1 18 Fold:Sm-like fold
Superfamily:GatD N-terminal domain-like
Family:GatD N-terminal domain-like
97c2xfbI_
not modelled 5.9 17 PDB header:virus
Chain: I: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map
98c3n43B_
not modelled 5.9 17 PDB header:viral protein
Chain: B: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: crystal structures of the mature envelope glycoprotein complex2 (trypsin cleavage) of chikungunya virus.
99c3iefA_
not modelled 5.8 67 PDB header:transferase, rna binding protein
Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs.

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