Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	S	T	F	T	S	D	T	L	P	A	D	H	K	A	A	I	R	Q	M	K	H	A	L	R	A	Q	L	G	D	V	Q	Q	I	F	N	Q	L	S	D	D	I	A	T	R	V	A	E	I	N	A	L	K	A	Q	G	D	A	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?											?	?	?																												?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	P	V	L	S	Y	A	D	I	K	A	G	H	V	T	A	E	Q	R	E	Q	I	K	R	R	G	C	A	V	I	K	G	H	F	P	R	E	Q	A	L	G	W	D	Q	S	M	L	D	Y	L	D	R	N	R	F	D	E	V	Y	K
Secondary structure
SS confidence
Disorder										?	?	?	?		?																																									?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	P	G	D	N	F	F	G	T	L	S	A	S	R	P	E	I	Y	P	I	Y	W	S	Q	A	Q	M	Q	A	R	Q	S	E	E	M	A	N	A	Q	S	F	L	N	R	L	W	T	F	E	S	D	G	K	Q	W	F	N	P	D	V
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?																	?																					?				?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	V	I	Y	P	D	R	I	R	R	R	P	P	G	T	T	S	K	G	L	G	A	H	T	D	S	G	A	L	E	R	W	L	L	P	A	Y	Q	R	V	F	A	N	V	F	N	G	N	L	A	Q	Y	D	P	W	H	A	A	H	R
Secondary structure
SS confidence
Disorder									?		?	?		?	?	?	?	?	?	?	?		?		?				?	?																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	E	V	E	E	Y	T	V	D	N	T	T	K	C	S	V	F	R	T	F	Q	G	W	T	A	L	S	D	M	L	P	G	Q	G	L	L	H	V	V	P	I	P	E	A	M	A	Y	V	L	L	R	P	L	L	D	D	V	P	E	D
Secondary structure
SS confidence
Disorder																												?	?	?	?	?			?										?	?	?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	L	C	G	V	A	P	G	R	V	L	P	V	S	E	Q	W	H	P	L	L	I	E	A	L	T	S	I	P	K	L	E	A	G	D	S	V	W	W	H	C	D	V	I	H	S	V	A	P	V	E	N	Q	Q	G	W	G	N	V	M
Secondary structure
SS confidence
Disorder																																																			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		Y	I	P	A	A	P	M	C	E	K	N	L	A	Y	A	H	K	V	K	A	A	L	E	K	G	A	S	P	G	D	F	P	R	E	D	Y	E	T	N	W	E	G	R	F	T	L	A	D	L	N	I	H	G	K	R	A	L	G	M	D
Secondary structure
SS confidence
Disorder																															?	?	?	?	?	?	?	?	?	?	?	?		?	?	?												?	?	?	?
Disorder confidence
		.
Sequence		V
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2csg chain A domain 1 Region: 3 - 419 Aligned: 417 Modelled: 417 Confidence: 100.0% Identity: 85% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: YbiU-like Phyre2 PDB 2dbi chain A Region: 4 - 419 Aligned: 397 Modelled: 401 Confidence: 100.0% Identity: 98% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ybiu; PDBTitle: crystal structure of a hypothetical protein jw0805 from2 escherichia coli Phyre2 PDB 2opw chain A Region: 74 - 364 Aligned: 220 Modelled: 234 Confidence: 99.3% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) Phyre2 PDB 2fct chain A domain 1 Region: 73 - 365 Aligned: 238 Modelled: 238 Confidence: 99.2% Identity: 15% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: PhyH-like Phyre2 PDB 2a1x chain A domain 1 Region: 73 - 365 Aligned: 207 Modelled: 216 Confidence: 99.2% Identity: 16% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: PhyH-like Phyre2 PDB 3gjb chain A Region: 73 - 365 Aligned: 198 Modelled: 206 Confidence: 99.1% Identity: 17% PDB header:biosynthetic protein Chain: A: PDB Molecule:cytc3; PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate Phyre2 PDB 3emr chain A Region: 72 - 362 Aligned: 209 Modelled: 215 Confidence: 99.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:ectd; PDBTitle: crystal structure analysis of the ectoine hydroxylase ectd from2 salibacillus salexigens Phyre2 PDB 2rds chain A Region: 76 - 374 Aligned: 235 Modelled: 257 Confidence: 98.7% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha- PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound Phyre2 PDB 3nnl chain B Region: 74 - 357 Aligned: 195 Modelled: 210 Confidence: 98.0% Identity: 18% PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) Phyre2 PDB 1dcs chain A Region: 58 - 209 Aligned: 146 Modelled: 152 Confidence: 96.7% Identity: 16% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Penicillin synthase-like Phyre2 PDB 3on7 chain C Region: 61 - 209 Aligned: 145 Modelled: 146 Confidence: 95.9% Identity: 18% PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution Phyre2 PDB 3oox chain A Region: 59 - 209 Aligned: 151 Modelled: 151 Confidence: 95.0% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein; PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution Phyre2 PDB 1w9y chain A domain 1 Region: 59 - 112 Aligned: 54 Modelled: 54 Confidence: 90.1% Identity: 13% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Penicillin synthase-like Phyre2 PDB 3dkq chain B Region: 330 - 390 Aligned: 61 Modelled: 61 Confidence: 89.8% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634; PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution Phyre2 PDB 3e77 chain A Region: 5 - 114 Aligned: 110 Modelled: 110 Confidence: 89.4% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: human phosphoserine aminotransferase in complex with plp Phyre2 PDB 2g19 chain A Region: 76 - 125 Aligned: 50 Modelled: 50 Confidence: 87.4% Identity: 10% PDB header:oxidoreductase Chain: A: PDB Molecule:egl nine homolog 1; PDBTitle: cellular oxygen sensing: crystal structure of hypoxia-2 inducible factor prolyl hydroxylase (phd2) Phyre2 PDB 3ms5 chain A Region: 61 - 106 Aligned: 46 Modelled: 46 Confidence: 78.8% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) Phyre2 PDB 1gp6 chain A Region: 50 - 111 Aligned: 62 Modelled: 62 Confidence: 77.5% Identity: 11% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Penicillin synthase-like Phyre2 PDB 3m5u chain A Region: 5 - 113 Aligned: 109 Modelled: 108 Confidence: 76.7% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni Phyre2 PDB 2c0r chain A domain 1 Region: 5 - 114 Aligned: 109 Modelled: 110 Confidence: 76.1% Identity: 16% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 1 d2csga1 2 c2dbiA_ 3 c2opwA_ 4 d2fcta1 5 d2a1xa1 6 c3gjbA_ 7 c3emrA_ 8 c2rdsA_ 9 c3nnlB_ 10 d1dcsa_ 11 c3on7C_ 12 c3ooxA_ 13 d1w9ya1 14 c3dkqB_ 15 c3e77A_ 16 c2g19A_ 17 c3ms5A_ 18 d1gp6a_ 19 c3m5uA_ 20 d2c0ra1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2csga1 100.0 85 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:YbiU-like 2 c2dbiA_ 100.0 98 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ybiu; PDBTitle: crystal structure of a hypothetical protein jw0805 from2 escherichia coli 3 c2opwA_ 99.3 18 PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) 4 d2fcta1 99.2 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 5 d2a1xa1 99.2 16 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 6 c3gjbA_ 99.1 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:cytc3; PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate 7 c3emrA_ 99.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:ectd; PDBTitle: crystal structure analysis of the ectoine hydroxylase ectd from2 salibacillus salexigens 8 c2rdsA_ 98.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha- PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound 9 c3nnlB_ 98.0 18 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 10 d1dcsa_ 96.7 16 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 11 c3on7C_ 95.9 18 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution 12 c3ooxA_ 95.0 12 PDB header:oxidoreductase Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein; PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution 13 d1w9ya1 90.1 13 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 14 c3dkqB_ 89.8 16 PDB header:oxidoreductase Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634; PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution 15 c3e77A_ 89.4 11 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: human phosphoserine aminotransferase in complex with plp 16 c2g19A_ 87.4 10 PDB header:oxidoreductase Chain: A: PDB Molecule:egl nine homolog 1; PDBTitle: cellular oxygen sensing: crystal structure of hypoxia-2 inducible factor prolyl hydroxylase (phd2) 17 c3ms5A_ 78.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) 18 d1gp6a_ 77.5 11 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 19 c3m5uA_ 76.7 12 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni 20 d2c0ra1 76.1 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 21 c3qm2A_ not modelled 68.7 15 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium 22 d1odma_ not modelled 66.3 7 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 23 d1w23a_ not modelled 65.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 24 d2z1ca1 not modelled 57.1 25 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 25 c2jijA_ not modelled 51.4 22 PDB header:hydrolase Chain: A: PDB Molecule:prolyl-4 hydroxylase; PDBTitle: crystal structure of the apo form of chlamydomonas2 reinhardtii prolyl-4 hydroxylase type i 26 d1v70a_ not modelled 49.7 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like 27 c3ouiA_ not modelled 49.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:egl nine homolog 1; PDBTitle: phd2-r717 with 40787422 28 c3pvjB_ not modelled 48.5 3 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 29 d1y9qa2 not modelled 44.9 24 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain 30 d2toda1 not modelled 44.8 14 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 31 c3gt2A_ not modelled 44.1 18 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 32 d1bjna_ not modelled 44.0 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 33 c3pbiA_ not modelled 43.5 13 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 34 d2ot2a1 not modelled 43.3 26 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 35 c3itqB_ not modelled 43.2 23 PDB header:oxidoreductase Chain: B: PDB Molecule:prolyl 4-hydroxylase, alpha subunit domain protein; PDBTitle: crystal structure of a prolyl 4-hydroxylase from bacillus anthracis 36 d1otja_ not modelled 42.8 6 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 37 c2a1dH_ not modelled 42.5 11 PDB header:hydrolase/hydrolase inhibitor Chain: H: PDB Molecule:staphylocoagulase; PDBTitle: staphylocoagulase bound to bovine thrombin 38 c3r1jB_ not modelled 42.1 6 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form 39 d2bnma2 not modelled 41.8 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 40 c2doqD_ not modelled 40.5 43 PDB header:cell cycle Chain: D: PDB Molecule:sfi1p; PDBTitle: crystal structure of sfi1p/cdc31p complex 41 d1bw0a_ not modelled 40.3 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 42 d1q3qa2 not modelled 40.2 13 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 43 d1oiha_ not modelled 39.6 10 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 44 c2hbkA_ not modelled 37.1 12 PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:exosome complex exonuclease rrp6; PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn 45 d7odca1 not modelled 36.9 27 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 46 c3sahA_ not modelled 35.5 18 PDB header:hydrolase Chain: A: PDB Molecule:exosome component 10; PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site 47 c3cewA_ not modelled 35.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 48 c3d3rA_ not modelled 35.0 21 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 49 d1g7oa1 not modelled 34.8 12 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 50 c3h7yA_ not modelled 34.6 9 PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form 51 d3d3ra1 not modelled 34.2 21 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 52 c2on3A_ not modelled 33.7 14 PDB header:lyase Chain: A: PDB Molecule:ornithine decarboxylase; PDBTitle: a structural insight into the inhibition of human and2 leishmania donovani ornithine decarboxylases by 3-aminooxy-3 1-aminopropane 53 c3cp8C_ not modelled 33.3 15 PDB header:oxidoreductase Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: crystal structure of gida from chlorobium tepidum 54 d1vp4a_ not modelled 33.3 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 55 d2hbka2 not modelled 31.6 12 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 56 c3kt4A_ not modelled 30.9 5 PDB header:oxidoreductase Chain: A: PDB Molecule:pkhd-type hydroxylase tpa1; PDBTitle: crystal structure of tpa1 from saccharomyces cerevisiae, a2 component of the messenger ribonucleoprotein complex 57 d1f3ta1 not modelled 30.7 14 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 58 c2xivA_ not modelled 30.4 13 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 59 d2evra2 not modelled 30.1 43 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 60 c3fcrA_ not modelled 27.8 16 PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution 61 d1njjb1 not modelled 27.7 14 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 62 d1sfna_ not modelled 27.6 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 63 d1pmma_ not modelled 27.2 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Pyridoxal-dependent decarboxylase 64 c3lnoA_ not modelled 26.8 9 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis 65 c3bq9A_ not modelled 26.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 66 c3dxvA_ not modelled 26.4 16 PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae 67 c3thtB_ not modelled 25.9 25 PDB header:oxidoreductase Chain: B: PDB Molecule:alkylated dna repair protein alkb homolog 8; PDBTitle: crystal structure and rna binding properties of the rrm/alkb domains2 in human abh8, an enzyme catalyzing trna hypermodification, northeast3 structural genomics consortium target hr5601b 68 d1uwda_ not modelled 25.6 14 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 69 c2fg0B_ not modelled 25.4 43 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 70 c1knwA_ not modelled 25.3 16 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase 71 c3ibmB_ not modelled 24.4 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 72 c2wl2B_ not modelled 24.3 15 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 73 c2ozjB_ not modelled 22.8 22 PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution 74 c2xcqA_ not modelled 22.8 18 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.98a crystal structure of the catalytic core (b'a'2 region) of staphylococcus aureus dna gyrase 75 c3s6eB_ not modelled 22.5 23 PDB header:rna binding protein Chain: B: PDB Molecule:rna-binding protein 39; PDBTitle: crystal structure of a rna binding motif protein 39 (rbm39) from mus2 musculus at 0.95 a resolution 76 c3t18D_ not modelled 22.2 14 PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. 77 c3h41A_ not modelled 22.0 30 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 78 c3h8uA_ not modelled 21.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 79 c3jzvA_ not modelled 21.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 80 d1d7ka1 not modelled 20.9 19 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 81 d2mev1_ not modelled 20.6 19 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4) 82 d1t0fa2 not modelled 20.6 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:TnsA endonuclease, N-terminal domain 83 c2pfyA_ not modelled 20.5 17 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid 84 d1apaa_ not modelled 20.3 11 Fold:Ribosome inactivating proteins (RIP) Superfamily:Ribosome inactivating proteins (RIP) Family:Plant cytotoxins 85 c3dnfB_ not modelled 20.3 23 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 86 c2xcsD_ not modelled 20.1 17 PDB header:isomerase Chain: D: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.1a crystal structure of s. aureus gyrase complex with gsk2994232 and dna 87 c2kp6A_ not modelled 19.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cv0237 from2 chromobacterium violaceum. northeast structural genomics3 consortium (nesg) target cvt1 88 c3dydB_ not modelled 19.8 10 PDB header:transferase Chain: B: PDB Molecule:tyrosine aminotransferase; PDBTitle: human tyrosine aminotransferase 89 c2pb2B_ not modelled 19.7 13 PDB header:transferase Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase; PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding 90 c2vpvA_ not modelled 19.7 3 PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p 91 d1knwa1 not modelled 19.4 22 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 92 c3fjsC_ not modelled 18.8 13 PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution 93 d1y0ka1 not modelled 18.6 41 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:PA4535-like 94 c3uyjA_ not modelled 18.4 14 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 95 c1e40A_ not modelled 18.0 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a 96 d1zvpa1 not modelled 17.9 60 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 97 d1bvua2 not modelled 17.4 18 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 98 d1gtma2 not modelled 16.7 18 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Aminoacid dehydrogenases 99 c2p3eA_ not modelled 16.4 11 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0