Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	F	D	V	F	Q	Q	Y	P	T	A	M	P	V	L	A	T	V	G	G	L	I	I	G	S	F	L	N	V	V	I	W	R	Y	P	I	M	L	R	Q	Q	M	A	E	F	H	G	E	M	S	S	A	Q	S	K	I	S	L	A
Secondary structure
SS confidence
Disorder		?																																							?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	P	R	S	H	C	P	H	C	Q	Q	T	I	R	I	R	D	N	I	P	L	F	S	W	L	M	L	K	G	R	C	R	D	C	Q	A	K	I	S	K	R	Y	P	L	V	E	L	L	T	A	L	A	F	L	L	A	S	L	V	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	E	S	G	W	G	L	A	V	M	I	L	S	A	W	L	I	A	A	S	V	I	D	L	D	H	Q	W	L	P	D	V	F	T	Q	G	V	L	W	T	G	L	I	A	A	W	A	Q	Q	S	P	L	T	L	Q	D	A	V	T	G
Secondary structure
SS confidence
Disorder																																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	L	V	G	F	I	T	F	Y	S	L	R	W	I	A	G	I	V	L	R	K	E	A	L	G	M	G	D	V	L	L	F	A	A	L	G	G	W	V	G	A	L	S	L	P	N	V	A	L	I	A	S	C	C	G	L	I	Y	A	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Sequence		I	T	K	R	G	S	T	T	L	P	F	G	P	C	L	S	L	G	G	I	A	T	L	Y	L	Q	A	L	F
Secondary structure
SS confidence
Disorder																											?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3s0x chain B Region: 123 - 267 Aligned: 141 Modelled: 145 Confidence: 98.7% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:peptidase a24b, flak domain protein; PDBTitle: the crystal structure of gxgd membrane protease flak Phyre2 PDB 2owo chain A Region: 51 - 97 Aligned: 37 Modelled: 47 Confidence: 86.6% Identity: 16% PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate Phyre2 PDB 1v9p chain B Region: 51 - 75 Aligned: 25 Modelled: 25 Confidence: 81.9% Identity: 12% PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase Phyre2 PDB 2k5c chain A Region: 64 - 79 Aligned: 16 Modelled: 16 Confidence: 81.7% Identity: 25% PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 Phyre2 PDB 3py7 chain A Region: 56 - 94 Aligned: 39 Modelled: 39 Confidence: 78.6% Identity: 21% PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution Phyre2 PDB 1dgs chain B Region: 51 - 73 Aligned: 23 Modelled: 23 Confidence: 76.6% Identity: 17% PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis Phyre2 PDB 1dgs chain A domain 1 Region: 63 - 73 Aligned: 11 Modelled: 11 Confidence: 74.9% Identity: 27% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: NAD+-dependent DNA ligase, domain 3 Phyre2 PDB 2fk4 chain A domain 1 Region: 56 - 97 Aligned: 42 Modelled: 42 Confidence: 69.5% Identity: 19% Fold: E6 C-terminal domain-like Superfamily: E6 C-terminal domain-like Family: E6 C-terminal domain-like Phyre2 PDB 1vd4 chain A Region: 66 - 98 Aligned: 33 Modelled: 33 Confidence: 69.2% Identity: 27% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 2fiy chain A domain 1 Region: 65 - 102 Aligned: 27 Modelled: 38 Confidence: 66.5% Identity: 22% Fold: FdhE-like Superfamily: FdhE-like Family: FdhE-like Phyre2 PDB 2qgp chain A Region: 86 - 102 Aligned: 17 Modelled: 17 Confidence: 66.5% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. Phyre2 PDB 3zyq chain A Region: 38 - 96 Aligned: 49 Modelled: 59 Confidence: 64.9% Identity: 18% PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution Phyre2 PDB 1vfy chain A Region: 60 - 96 Aligned: 28 Modelled: 37 Confidence: 63.6% Identity: 29% Fold: FYVE/PHD zinc finger Superfamily: FYVE/PHD zinc finger Family: FYVE, a phosphatidylinositol-3-phosphate binding domain Phyre2 PDB 1pfv chain A domain 3 Region: 65 - 79 Aligned: 15 Modelled: 15 Confidence: 63.0% Identity: 27% Fold: Rubredoxin-like Superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain Family: Methionyl-tRNA synthetase (MetRS), Zn-domain Phyre2 PDB 2ea6 chain A Region: 65 - 101 Aligned: 34 Modelled: 37 Confidence: 62.8% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:ring finger protein 4; PDBTitle: solution structure of the ring domain of the human ring2 finger protein 4 Phyre2 PDB 2jne chain A domain 1 Region: 65 - 96 Aligned: 23 Modelled: 32 Confidence: 62.1% Identity: 43% Fold: Rubredoxin-like Superfamily: YfgJ-like Family: YfgJ-like Phyre2 PDB 2jne chain A Region: 65 - 96 Aligned: 23 Modelled: 32 Confidence: 62.1% Identity: 43% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. Phyre2 PDB 2lcq chain A Region: 62 - 74 Aligned: 13 Modelled: 13 Confidence: 62.0% Identity: 31% PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii Phyre2 PDB 1wfp chain A Region: 40 - 96 Aligned: 45 Modelled: 57 Confidence: 61.6% Identity: 18% Fold: AN1-like Zinc finger Superfamily: AN1-like Zinc finger Family: AN1-like Zinc finger Phyre2 PDB 1dvp chain A domain 2 Region: 51 - 96 Aligned: 37 Modelled: 46 Confidence: 59.7% Identity: 19% Fold: FYVE/PHD zinc finger Superfamily: FYVE/PHD zinc finger Family: FYVE, a phosphatidylinositol-3-phosphate binding domain Phyre2 PDB 3flo chain D Region: 65 - 111 Aligned: 44 Modelled: 44 Confidence: 55.8% Identity: 18% PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit Phyre2 1 c3s0xB_ 2 c2owoA_ 3 c1v9pB_ 4 c2k5cA_ 5 c3py7A_ 6 c1dgsB_ 7 d1dgsa1 8 d2fk4a1 9 d1vd4a_ 10 d2fiya1 11 c2qgpA_ 12 c3zyqA_ 13 d1vfya_ 14 d1pfva3 15 c2ea6A_ 16 d2jnea1 17 c2jneA_ 18 c2lcqA_ 19 d1wfpa_ 20 d1dvpa2 21 22 23 24 25 26 27 c3floD_ 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3s0xB_ 98.7 19 PDB header:hydrolase Chain: B: PDB Molecule:peptidase a24b, flak domain protein; PDBTitle: the crystal structure of gxgd membrane protease flak 2 c2owoA_ 86.6 16 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 3 c1v9pB_ 81.9 12 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 4 c2k5cA_ 81.7 25 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 5 c3py7A_ 78.6 21 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 6 c1dgsB_ 76.6 17 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 7 d1dgsa1 74.9 27 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 8 d2fk4a1 69.5 19 Fold:E6 C-terminal domain-like Superfamily:E6 C-terminal domain-like Family:E6 C-terminal domain-like 9 d1vd4a_ 69.2 27 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 10 d2fiya1 66.5 22 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 11 c2qgpA_ 66.5 18 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 12 c3zyqA_ 64.9 18 PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution 13 d1vfya_ 63.6 29 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 14 d1pfva3 63.0 27 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 15 c2ea6A_ 62.8 21 PDB header:transcription Chain: A: PDB Molecule:ring finger protein 4; PDBTitle: solution structure of the ring domain of the human ring2 finger protein 4 16 d2jnea1 62.1 43 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 17 c2jneA_ 62.1 43 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 18 c2lcqA_ 62.0 31 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 19 d1wfpa_ 61.6 18 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 20 d1dvpa2 59.7 19 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 21 c3nw0A_ not modelled 59.4 18 PDB header:metal binding protein Chain: A: PDB Molecule:non-structural maintenance of chromosomes element 1 PDBTitle: crystal structure of mageg1 and nse1 complex 22 c3llkA_ not modelled 58.7 23 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfhydryl oxidase 1; PDBTitle: sulfhydryl oxidase fragment of human qsox1 23 d1wg2a_ not modelled 58.6 18 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 24 c1dvpA_ not modelled 58.5 24 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 25 d1wfka_ not modelled 57.6 36 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 26 c2kr6A_ not modelled 57.4 21 PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit 27 c3floD_ 55.8 18 PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit 28 c3pfqA_ not modelled 55.7 18 PDB header:transferase Chain: A: PDB Molecule:protein kinase c beta type; PDBTitle: crystal structure and allosteric activation of protein kinase c beta2 ii 29 c2ecmA_ not modelled 55.1 26 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution structure of the ring domain of the ring finger2 and chy zinc finger domain-containing protein 1 from mus3 musculus 30 c3odeA_ not modelled 54.3 33 PDB header:dna binding protein/dna Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: human parp-1 zinc finger 2 (zn2) bound to dna 31 c3k1lA_ not modelled 54.3 43 PDB header:ligase Chain: A: PDB Molecule:fancl; PDBTitle: crystal structure of fancl 32 c2dmjA_ not modelled 54.2 25 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 1; PDBTitle: solution structure of the first zf-parp domain of human2 poly(adp-ribose)polymerase-1 33 c2hr5B_ not modelled 53.6 17 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 34 c2ep4A_ not modelled 53.6 21 PDB header:protein binding Chain: A: PDB Molecule:ring finger protein 24; PDBTitle: solution structure of ring finger from human ring finger2 protein 24 35 d1wfha_ not modelled 53.5 26 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 36 c2kizA_ not modelled 52.8 26 PDB header:metal binding protein Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arkadia; PDBTitle: solution structure of arkadia ring-h2 finger domain 37 c2jrpA_ not modelled 52.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 38 d2baya1 not modelled 50.4 11 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 39 d2gmga1 not modelled 50.3 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 40 c1x4wA_ not modelled 50.2 35 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein flj13222; PDBTitle: solution structure of the zf-an1 domain from human2 hypothetical protein flj13222 41 c1z2qA_ not modelled 49.8 16 PDB header:membrane protein Chain: A: PDB Molecule:lm5-1; PDBTitle: high-resolution solution structure of the lm5-1 fyve domain2 from leishmania major 42 c2l0bA_ not modelled 49.6 25 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase praja-1; PDBTitle: solution nmr structure of zinc finger domain of e3 ubiquitin-protein2 ligase praja-1 from homo sapiens, northeast structural genomics3 consortium (nesg) target hr4710b 43 c2ja6L_ not modelled 49.4 28 PDB header:transferase Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 PDBTitle: cpd lesion containing rna polymerase ii elongation complex2 b 44 c2k9hA_ not modelled 48.4 17 PDB header:metal binding protein Chain: A: PDB Molecule:glycoprotein; PDBTitle: the hantavirus glycoprotein g1 tail contains a dual cchc-2 type classical zinc fingers 45 c2d8tA_ not modelled 47.4 22 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger protein 146; PDBTitle: solution structure of the ring domain of the human ring2 finger protein 146 46 d1iyma_ not modelled 46.9 20 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 47 c2ct0A_ not modelled 46.6 20 PDB header:gene regulation Chain: A: PDB Molecule:non-smc element 1 homolog; PDBTitle: solution structure of the ring domain of the non-smc2 element 1 protein 48 c2kdxA_ not modelled 46.5 25 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 49 c2vjfB_ not modelled 46.4 16 PDB header:ligase Chain: B: PDB Molecule:mdm4 protein; PDBTitle: crystal structure of the mdm2-mdmx ring domain heterodimer 50 c1dvbA_ not modelled 46.0 17 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 51 c3axtA_ not modelled 45.4 30 PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine 52 c2cs2A_ not modelled 45.2 33 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1; PDBTitle: solution structure of the second zn-finger domain of2 poly(adp-ribose) polymerase-1 53 c3a44D_ not modelled 44.6 14 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 54 c3h0gL_ not modelled 44.4 28 PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 55 c3bjiA_ not modelled 44.0 31 PDB header:signaling protein Chain: A: PDB Molecule:proto-oncogene vav; PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1 56 c3ky9B_ not modelled 43.9 29 PDB header:apoptosis Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: autoinhibited vav1 57 d2ctda2 not modelled 43.9 44 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 58 d2gnra1 not modelled 43.8 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 59 c2xeuA_ not modelled 43.7 26 PDB header:transcription Chain: A: PDB Molecule:ring finger protein 4; PDBTitle: ring domain 60 d1rmda2 not modelled 43.7 35 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 61 d2ayja1 not modelled 43.6 17 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L40e 62 c1v9xA_ not modelled 42.7 25 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase; PDBTitle: solution structure of the first zn-finger domain of2 poly(adp-ribose) polymerase-1 63 c2djbA_ not modelled 42.5 16 PDB header:gene regulation Chain: A: PDB Molecule:polycomb group ring finger protein 6; PDBTitle: solution structure of the ring domain of the human polycomb2 group ring finger protein 6 64 c1x4jA_ not modelled 42.0 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ring finger protein 38; PDBTitle: solution structure of ring finger in ring finger protein 38 65 c2qkdA_ not modelled 41.9 24 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 66 c2f9iD_ not modelled 41.9 16 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 67 d1faqa_ not modelled 41.4 37 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 68 c2ectA_ not modelled 41.4 19 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger protein 126; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of ring finger protein 126 69 c2i5oA_ not modelled 41.2 25 PDB header:transferase Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: solution structure of the ubiquitin-binding zinc finger2 (ubz) domain of the human dna y-polymerase eta 70 c3cngC_ not modelled 41.0 20 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 71 c2f42A_ not modelled 40.8 17 PDB header:chaperone Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1; PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein 72 c3lrqB_ not modelled 40.7 32 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim37; PDBTitle: crystal structure of the u-box domain of human ubiquitin-2 protein ligase (e3), northeast structural genomics3 consortium target hr4604d. 73 d1uw0a_ not modelled 40.6 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:PARP-type zinc finger 74 c2zkr2_ not modelled 40.4 23 PDB header:ribosomal protein/rna Chain: 2: PDB Molecule:60s ribosomal protein l37e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 75 d1vqo11 not modelled 39.5 30 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37e 76 d1wjva1 not modelled 39.2 26 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:C2HC finger 77 c2rowA_ not modelled 39.1 35 PDB header:transferase Chain: A: PDB Molecule:rho-associated protein kinase 2; PDBTitle: the c1 domain of rock ii 78 c3tsuA_ not modelled 38.8 12 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 79 d1wffa_ not modelled 38.5 28 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 80 c3t7lA_ not modelled 38.5 22 PDB header:transport protein Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 16; PDBTitle: crystal structure of the fyve domain of endofin (zfyve16) at 1.1a2 resolution 81 d2cu8a1 not modelled 38.4 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 82 d2ct1a1 not modelled 38.1 60 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 83 c2jr6A_ not modelled 37.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 84 c2pmzB_ not modelled 37.6 19 PDB header:translation, transferase Chain: B: PDB Molecule:dna-directed rna polymerase subunit b; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 85 c2jmdA_ not modelled 37.4 17 PDB header:ligase Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: solution structure of the ring domain of human traf6 86 c3jywY_ not modelled 35.8 36 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 87 d1tjla2 not modelled 35.7 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Prokaryotic DksA/TraR C4-type zinc finger 88 d1q1aa_ not modelled 35.5 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 89 d1xa6a3 not modelled 35.4 35 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 90 c1jocA_ not modelled 35.3 28 PDB header:membrane protein Chain: A: PDB Molecule:early endosomal autoantigen 1; PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate 91 c2y43B_ not modelled 35.0 14 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rad18; PDBTitle: rad18 ubiquitin ligase ring domain structure 92 c1hk8A_ not modelled 33.7 27 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 93 d1hk8a_ not modelled 33.7 27 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 94 c3t6pA_ not modelled 33.7 40 PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 2; PDBTitle: iap antagonist-induced conformational change in ciap1 promotes e32 ligase activation via dimerization 95 c1s1iY_ not modelled 33.6 36 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 96 c2db6A_ not modelled 33.5 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 and cysteine rich domain 3; PDBTitle: solution structure of rsgi ruh-051, a c1 domain of stac32 from human cdna 97 d1s5pa_ not modelled 32.9 8 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 98 c2csyA_ not modelled 32.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:zinc finger protein 183-like 1; PDBTitle: solution structure of the ring domain of the zinc finger2 protein 183-like 1 99 d2cona1 not modelled 32.7 36 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 100 d1chca_ not modelled 32.3 16 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 101 c2eluA_ not modelled 32.0 50 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 5th c2h2 zinc finger of human2 zinc finger protein 406 102 c2ecvA_ not modelled 31.5 24 PDB header:ligase Chain: A: PDB Molecule:tripartite motif-containing protein 5; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of tripartite motif-containing protein 5 103 d1zbdb_ not modelled 31.4 18 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 104 c2eciA_ not modelled 31.4 16 PDB header:metal binding protein Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein 105 c1u5kA_ not modelled 31.0 18 PDB header:recombination,replication Chain: A: PDB Molecule:hypothetical protein; PDBTitle: recombinational repair protein reco 106 c2kgoA_ not modelled 30.9 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ybii; PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402 107 c1z6uA_ not modelled 30.8 19 PDB header:ligase Chain: A: PDB Molecule:np95-like ring finger protein isoform b; PDBTitle: np95-like ring finger protein isoform b [homo sapiens] 108 d1jm7a_ not modelled 30.8 32 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 109 d2c2la2 not modelled 30.7 17 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 110 c1tjlD_ not modelled 30.7 33 PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli 111 d1wfla_ not modelled 29.9 19 Fold:AN1-like Zinc finger Superfamily:AN1-like Zinc finger Family:AN1-like Zinc finger 112 c3u50C_ not modelled 29.9 19 PDB header:dna binding protein Chain: C: PDB Molecule:telomerase-associated protein 82; PDBTitle: crystal structure of the tetrahymena telomerase processivity factor2 teb1 ob-c 113 d1x3ha1 not modelled 29.7 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 114 c2hcnA_ not modelled 29.5 22 PDB header:transferase Chain: A: PDB Molecule:rna-directed rna polymerase (ns5); PDBTitle: crystal structure of rna dependent rna polymerase domain from west2 nile virus 115 d1iyca_ not modelled 29.4 35 Fold:Invertebrate chitin-binding proteins Superfamily:Invertebrate chitin-binding proteins Family:Antifungal peptide scarabaecin 116 c2cszA_ not modelled 29.0 19 PDB header:signaling protein Chain: A: PDB Molecule:synaptotagmin-like protein 4; PDBTitle: solution structure of the ring domain of the synaptotagmin-2 like protein 4 117 d1kbea_ not modelled 28.9 33 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 118 d1yc5a1 not modelled 28.7 23 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 119 c2klxA_ not modelled 28.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston 120 d1dsva_ not modelled 28.4 29 Fold:Retrovirus zinc finger-like domains Superfamily:Retrovirus zinc finger-like domains Family:Retrovirus zinc finger-like domains

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0