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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2hcnA_

Fold library idPDB HeaderMoleculeTitle
c2hcnA_PDB header: transferaseChain: A: PDB Molecule: rna-directed rna polymerase (ns5);PDBTitle: crystal structure of rna dependent rna polymerase domain2 from west nile virus


Added to library: Tue Mar 16 13:57:56 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LVNGVVRLLSKPWDTITTKAPEPPEGVKYVLNETTNWLWAFLAREKRPRMCSREEFIRKVNSNAAQWRSA
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Known secondary structure (DSSP)
B
T
GGGTT








TTT






S




S
 .........80.........90.........100.........110.........120.........130.........140
Sequence REAVEDPKFWEMVDEEREAHLRGECHTCRAIWFMWLGARFLEFEALGFLNEDHWLGRKNSGGGVEGLGLQ
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Known secondary structure (DSSP)
T





TTTTTTSSSB
TT

 .........150.........160.........170.........180.........190.........200.........210
Sequence KLGYILREVGTRPGGRIYADDTAGWDTRITRADLENEAKVLELLDGEHRRLARAIIELTYRSGQVVTYAL
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Known secondary structure (DSSP) TTSSSS
BB


BTTGGGS

GGGGGG

TTTT


 .........220.........230.........240.........250.........260.........270.........280
Sequence NTFTNLAVQLVRMMEGEGVIGPDDVEKLTKGKGPKVRTWLSENGEERLSRMAVSGDDCVVKPLDDRFATS
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Known secondary structure (DSSP) TTSS
TTSSSS

TTTTTT

SSGGGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence LHFLNAMSKVRKDIQEWKPSTGWYDWQQVPFCSNHFTELIMKDGRTLVTPCRGQDELVGRARISPNVRDT
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Known secondary structure (DSSP)
TT

BTTS
TTS



BS
TTT

BTTB
TTS


TB



 .........360.........370.........380.........390.........400.........410.........420
Sequence ACLAKSYAQMWLLLYFHRRDLRLMANAICSAVPVNWVPTGRTTWSIHAGGEWMTTEDMLEVWNRVWIEEN
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Known secondary structure (DSSP) STTSS
TT



S



S

S

TT
SSS
TTT
 .........430.........440.........450.........460.........470.........480......
Sequence EWMEDKTPVEKWSDVPYSGKREDIWCGSLIGTRARATWAENIQVAINQVRSIIGDEKYVDYMSSLK
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Known secondary structure (DSSP) TT








GGGS



TT

TTST
S





GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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