Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	E	P	H	V	A	V	L	S	Q	V	Q	Q	F	L	D	R	Q	H	G	L	Y	I	D	G	R	P	G	P	A	Q	S	E	K	R	L	A	I	F	D	P	A	T	G	Q	E	I	A	S	T	A	D	A	N	E	A	D	V	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	A	V	M	S	A	W	R	A	F	V	S	R	R	W	A	G	R	L	P	A	E	R	E	R	I	L	L	R	F	A	D	L	V	E	Q	H	S	E	E	L	A	Q	L	E	T	L	E	Q	G	K	S	I	A	I	S	R	A	F	E
Secondary structure
SS confidence
Disorder														?	?	?	?	?	?																																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	G	C	T	L	N	W	M	R	Y	T	A	G	L	T	T	K	I	A	G	K	T	L	D	L	S	I	P	L	P	Q	G	A	R	Y	Q	A	W	T	R	K	E	P	V	G	V	V	A	G	I	V	P	W	N	F	P	L	M	I	G
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	W	K	V	M	P	A	L	A	A	G	C	S	I	V	I	K	P	S	E	T	T	P	L	T	M	L	R	V	A	E	L	A	S	E	A	G	I	P	D	G	V	F	N	V	V	T	G	S	G	A	V	C	G	A	A	L	T	S	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	H	V	A	K	I	S	F	T	G	S	T	A	T	G	K	G	I	A	R	T	A	A	D	H	L	T	R	V	T	L	E	L	G	G	K	N	P	A	I	V	L	K	D	A	D	P	Q	W	V	I	E	G	L	M	T	G	S	F	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	Q	G	Q	V	C	A	A	S	S	R	I	Y	I	E	A	P	L	F	D	T	L	V	S	G	F	E	Q	A	V	K	S	L	Q	V	G	P	G	M	S	P	V	A	Q	I	N	P	L	V	S	R	A	H	C	D	K	V	C	S	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	D	D	A	Q	A	Q	Q	A	E	L	I	R	G	S	N	G	P	A	G	E	G	Y	Y	V	A	P	T	L	V	V	N	P	D	A	K	L	R	L	T	R	E	E	V	F	G	P	V	V	N	L	V	R	V	A	D	G	E	E	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		L	Q	L	A	N	D	T	E	Y	G	L	T	A	S	V	W	T	Q	N	L	S	Q	A	L	E	Y	S	D	R	L	Q	A	G	T	V	W	V	N	S	H	T	L	I	D	A	N	L	P	F	G	G	M	K	Q	S	G	T	G	R	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Sequence		F	G	P	D	W	L	D	G	W	C	E	T	K	S	V	C	V	R	Y
Secondary structure
SS confidence
Disorder																				?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2o2q chain A Region: 16 - 499 Aligned: 482 Modelled: 484 Confidence: 100.0% Identity: 37% PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp Phyre2 PDB 1bxs chain A Region: 18 - 499 Aligned: 476 Modelled: 482 Confidence: 100.0% Identity: 37% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3ed6 chain B Region: 10 - 499 Aligned: 484 Modelled: 490 Confidence: 100.0% Identity: 37% PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus Phyre2 PDB 2jg7 chain G Region: 1 - 499 Aligned: 486 Modelled: 497 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity Phyre2 PDB 1o9j chain A Region: 18 - 499 Aligned: 476 Modelled: 482 Confidence: 100.0% Identity: 38% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1o04 chain A Region: 19 - 499 Aligned: 475 Modelled: 481 Confidence: 100.0% Identity: 40% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3qan chain B Region: 3 - 499 Aligned: 486 Modelled: 497 Confidence: 100.0% Identity: 31% PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans Phyre2 PDB 2d4e chain B Region: 1 - 499 Aligned: 488 Modelled: 499 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 Phyre2 PDB 3iwk chain B Region: 19 - 499 Aligned: 478 Modelled: 481 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) Phyre2 PDB 1a4s chain A Region: 21 - 499 Aligned: 469 Modelled: 479 Confidence: 100.0% Identity: 35% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1ag8 chain A Region: 19 - 499 Aligned: 475 Modelled: 481 Confidence: 100.0% Identity: 40% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 1uzb chain A Region: 5 - 499 Aligned: 484 Modelled: 495 Confidence: 100.0% Identity: 31% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 2ve5 chain H Region: 18 - 499 Aligned: 474 Modelled: 482 Confidence: 100.0% Identity: 41% PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa Phyre2 PDB 3rh9 chain A Region: 18 - 496 Aligned: 471 Modelled: 474 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei Phyre2 PDB 1wnd chain A Region: 19 - 499 Aligned: 472 Modelled: 481 Confidence: 100.0% Identity: 38% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3b4w chain A Region: 16 - 499 Aligned: 476 Modelled: 484 Confidence: 100.0% Identity: 35% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ Phyre2 PDB 3ifg chain H Region: 18 - 498 Aligned: 473 Modelled: 481 Confidence: 100.0% Identity: 37% PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 Phyre2 PDB 3ek1 chain C Region: 19 - 499 Aligned: 471 Modelled: 479 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 Phyre2 PDB 1euh chain A Region: 18 - 499 Aligned: 471 Modelled: 482 Confidence: 100.0% Identity: 33% Fold: ALDH-like Superfamily: ALDH-like Family: ALDH-like Phyre2 PDB 3r31 chain A Region: 19 - 499 Aligned: 472 Modelled: 481 Confidence: 100.0% Identity: 38% PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens Phyre2 1 c2o2qA_ 2 d1bxsa_ 3 c3ed6B_ 4 c2jg7G_ 5 d1o9ja_ 6 d1o04a_ 7 c3qanB_ 8 c2d4eB_ 9 c3iwkB_ 10 d1a4sa_ 11 d1ag8a_ 12 d1uzba_ 13 c2ve5H_ 14 c3rh9A_ 15 d1wnda_ 16 c3b4wA_ 17 c3ifgH_ 18 c3ek1C_ 19 d1euha_ 20 c3r31A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2o2qA_ 100.0 37 PDB header:oxidoreductase Chain: A: PDB Molecule:formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the c-terminal domain of rat2 10'formyltetrahydrofolate dehydrogenase in complex with nadp 2 d1bxsa_ 100.0 37 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 3 c3ed6B_ 100.0 37 PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus 4 c2jg7G_ 100.0 28 PDB header:oxidoreductase Chain: G: PDB Molecule:antiquitin; PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity 5 d1o9ja_ 100.0 38 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 6 d1o04a_ 100.0 40 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 7 c3qanB_ 100.0 31 PDB header:oxidoreductase Chain: B: PDB Molecule:1-pyrroline-5-carboxylate dehydrogenase 1; PDBTitle: crystal structure of 1-pyrroline-5-carboxylate dehydrogenase from2 bacillus halodurans 8 c2d4eB_ 100.0 36 PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 9 c3iwkB_ 100.0 36 PDB header:oxidoreductase Chain: B: PDB Molecule:aminoaldehyde dehydrogenase; PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from2 pisum sativum (psamadh1) 10 d1a4sa_ 100.0 35 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 11 d1ag8a_ 100.0 40 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 12 d1uzba_ 100.0 31 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 13 c2ve5H_ 100.0 41 PDB header:oxidoreductase Chain: H: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystallographic structure of betaine aldehyde2 dehydrogenase from pseudomonas aeruginosa 14 c3rh9A_ 100.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase (nad(p)(+)); PDBTitle: the crystal structure of oxidoreductase from marinobacter aquaeolei 15 d1wnda_ 100.0 38 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 16 c3b4wA_ 100.0 35 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ 17 c3ifgH_ 100.0 37 PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 18 c3ek1C_ 100.0 34 PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 19 d1euha_ 100.0 33 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 20 c3r31A_ 100.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens 21 c3k2wD_ not modelled 100.0 34 PDB header:oxidoreductase Chain: D: PDB Molecule:betaine-aldehyde dehydrogenase; PDBTitle: crystal structure of betaine-aldehyde dehydrogenase from2 pseudoalteromonas atlantica t6c 22 c3jz4C_ not modelled 100.0 35 PDB header:oxidoreductase Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme 23 c1t90B_ not modelled 100.0 30 PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis 24 c2w8qA_ not modelled 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. 25 c2hg2A_ not modelled 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase a; PDBTitle: structure of lactaldehyde dehydrogenase 26 c3i44A_ not modelled 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from bartonella2 henselae at 2.0a resolution 27 d1ky8a_ not modelled 100.0 27 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 28 c3prlD_ not modelled 100.0 33 PDB header:oxidoreductase Chain: D: PDB Molecule:nadp-dependent glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-phosphate2 dehydrogenase from bacillus halodurans c-125 29 d1bi9a_ not modelled 100.0 37 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 30 c3hazA_ not modelled 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:proline dehydrogenase; PDBTitle: crystal structure of bifunctional proline utilization a2 (puta) protein 31 c3ju8B_ not modelled 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:succinylglutamic semialdehyde dehydrogenase; PDBTitle: crystal structure of succinylglutamic semialdehyde dehydrogenase from2 pseudomonas aeruginosa. 32 c3rosA_ not modelled 100.0 28 PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent aldehyde dehydrogenase; PDBTitle: crystal structure of nad-dependent aldehyde dehydrogenase from2 lactobacillus acidophilus 33 c3efvC_ not modelled 100.0 31 PDB header:oxidoreductase Chain: C: PDB Molecule:putative succinate-semialdehyde dehydrogenase; PDBTitle: crystal structure of a putative succinate-semialdehyde dehydrogenase2 from salmonella typhimurium lt2 with bound nad 34 c2vroB_ not modelled 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400 35 c3r64A_ not modelled 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:nad dependent benzaldehyde dehydrogenase; PDBTitle: crystal structure of a nad-dependent benzaldehyde dehydrogenase from2 corynebacterium glutamicum 36 c3pqaA_ not modelled 100.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661 37 d1ad3a_ not modelled 100.0 27 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 38 c3v4cB_ not modelled 100.0 26 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+); PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021 39 d1ez0a_ not modelled 100.0 22 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 40 c3lnsD_ not modelled 100.0 28 PDB header:oxidoreductase Chain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct 41 c3k9dD_ not modelled 100.0 20 PDB header:oxidoreductase Chain: D: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of probable aldehyde dehydrogenase from listeria2 monocytogenes egd-e 42 d1o20a_ not modelled 100.0 14 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 43 c3my7A_ not modelled 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase/acetaldehyde dehydrogenase; PDBTitle: the crystal structure of the acdh domain of an alcohol dehydrogenase2 from vibrio parahaemolyticus to 2.25a 44 c2h5gA_ not modelled 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase 45 d1vlua_ not modelled 100.0 16 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 46 c1vluB_ not modelled 100.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:gamma-glutamyl phosphate reductase; PDBTitle: crystal structure of gamma-glutamyl phosphate reductase (yor323c) from2 saccharomyces cerevisiae at 2.40 a resolution 47 d1k75a_ not modelled 98.8 18 Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD 48 c2yvqA_ not modelled 52.2 13 PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens 49 d1s7ia_ not modelled 50.6 20 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946) 50 d1a9xa2 not modelled 43.7 22 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain 51 d1wo8a1 not modelled 33.5 16 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 52 c3jtpB_ not modelled 32.6 17 PDB header:protein binding Chain: B: PDB Molecule:adapter protein meca 1; PDBTitle: crystal structure of the c-terminal domain of meca 53 d1y5ea1 not modelled 28.9 23 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 54 c3e5bB_ not modelled 24.6 14 PDB header:lyase Chain: B: PDB Molecule:isocitrate lyase; PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella2 melitensis 55 d1o66a_ not modelled 24.2 10 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 56 c2yukA_ not modelled 19.7 19 PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog 57 d2ioja1 not modelled 19.2 17 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 58 d1mkza_ not modelled 16.9 20 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 59 d1u0ta_ not modelled 15.3 20 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 60 d1js8a1 not modelled 14.7 11 Fold:Di-copper centre-containing domain Superfamily:Di-copper centre-containing domain Family:Hemocyanin middle domain 61 d2bona1 not modelled 14.1 16 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 62 d1h6da1 not modelled 13.0 6 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 63 c3v4gA_ not modelled 12.5 24 PDB header:dna binding protein Chain: A: PDB Molecule:arginine repressor; PDBTitle: 1.60 angstrom resolution crystal structure of an arginine repressor2 from vibrio vulnificus cmcp6 64 c2ec4A_ not modelled 12.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the uas domain from human fas-2 associated factor 1 65 d1xxaa_ not modelled 12.1 24 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 66 c2pjkA_ not modelled 12.0 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 67 c3lo3E_ not modelled 11.7 11 PDB header:structure genomics, unknown function Chain: E: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown2 protein from colwellia psychrerythraea 34h. 68 d2g2ca1 not modelled 11.6 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 69 c2l69A_ not modelled 11.2 19 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 70 c1kb0A_ not modelled 11.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni 71 c2p2sA_ not modelled 11.1 11 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_050235.1) from2 erwinia carotovora atroseptica scri1043 at 1.25 a resolution 72 d2fug12 not modelled 10.9 17 Fold:Nqo1 FMN-binding domain-like Superfamily:Nqo1 FMN-binding domain-like Family:Nqo1 FMN-binding domain-like 73 c3nt5B_ not modelled 10.8 16 PDB header:oxidoreductase Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase; PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose 74 d1wu2a3 not modelled 10.8 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 75 c1yiqA_ not modelled 10.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism. 76 c2nvwB_ not modelled 9.8 9 PDB header:transcription Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis 77 c2fugA_ not modelled 9.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 78 d1ydwa1 not modelled 9.7 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 79 d1u2ca2 not modelled 9.3 23 Fold:Dystroglycan, domain 2 Superfamily:Dystroglycan, domain 2 Family:Dystroglycan, domain 2 80 c2qguA_ not modelled 9.2 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 81 c3gfgB_ not modelled 9.2 8 PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa; PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form 82 c2q4eB_ not modelled 9.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:probable oxidoreductase at4g09670; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670 83 c3ibpA_ not modelled 8.9 10 PDB header:cell cycle Chain: A: PDB Molecule:chromosome partition protein mukb; PDBTitle: the crystal structure of the dimerization domain of escherichia coli2 structural maintenance of chromosomes protein mukb 84 d2ftsa3 not modelled 8.8 18 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 85 d2tpta3 not modelled 8.6 15 Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain 86 c1wx2A_ not modelled 8.5 15 PDB header:oxidoreductase/metal transport Chain: A: PDB Molecule:tyrosinase; PDBTitle: crystal structure of the oxy-form of the copper-bound streptomyces2 castaneoglobisporus tyrosinase complexed with a caddie protein3 prepared by the addition of hydrogenperoxide 87 d2f7wa1 not modelled 8.3 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 88 d1srqa_ not modelled 8.2 11 Fold:Rap/Ran-GAP Superfamily:Rap/Ran-GAP Family:Rap/Ran-GAP 89 c1kv9A_ not modelled 8.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase; PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5 90 c1v9nA_ not modelled 7.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3 91 c2v9vA_ not modelled 7.9 9 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 92 d1xrha_ not modelled 7.8 16 Fold:L-sulfolactate dehydrogenase-like Superfamily:L-sulfolactate dehydrogenase-like Family:L-sulfolactate dehydrogenase-like 93 c3uoeB_ not modelled 7.7 16 PDB header:oxidoreductase Chain: B: PDB Molecule:dehydrogenase; PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti 94 c2is8A_ not modelled 7.6 15 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 95 c2bonB_ not modelled 7.3 15 PDB header:transferase Chain: B: PDB Molecule:lipid kinase; PDBTitle: structure of an escherichia coli lipid kinase (yegs) 96 d2fiua1 not modelled 7.2 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Atu0297-like 97 c3f4lF_ not modelled 7.2 13 PDB header:oxidoreductase Chain: F: PDB Molecule:putative oxidoreductase yhhx; PDBTitle: crystal structure of a probable oxidoreductase yhhx in2 triclinic form. northeast structural genomics target er647 98 d1yuaa2 not modelled 7.1 27 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment 99 c3rfqC_ not modelled 7.1 24 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0