Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	G	W	Q	R	A	F	V	L	H	S	R	P	W	S	E	T	S	L	M	L	D	V	F	T	E	E	S	G	R	V	R	L	V	A	K	G	A	R	S	K	R	S	T	L	K	G	A	L	Q	P	F	T	P	L	L	L	R	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																				?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	G	R	G	E	V	K	T	L	R	S	A	E	A	V	S	L	A	L	P	L	S	G	I	T	L	Y	S	G	L	Y	I	N	E	L	L	S	R	V	L	E	Y	E	T	R	F	S	E	L	F	F	D	Y	L	H	C	I	Q	S	L
Secondary structure
SS confidence
Disorder					?		?								?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	G	V	T	G	T	P	E	P	A	L	R	R	F	E	L	A	L	L	G	H	L	G	Y	G	V	N	F	T	H	C	A	G	S	G	E	P	V	D	D	T	M	T	Y	R	Y	R	E	E	K	G	F	I	A	S	V	V	I	D	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	T	F	T	G	R	Q	L	K	A	L	N	A	R	E	F	P	D	A	D	T	L	R	A	A	K	R	F	T	R	M	A	L	K	P	Y	L	G	G	K	P	L	K	S	R	E	L	F	R	Q	F	M	P	K	R	T	V	K	T	H
Secondary structure
SS confidence
Disorder		?	?											?	?	?			?																																				?	?	?	?	?	?	?
Disorder confidence
		.	.
Sequence		Y	E
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3q8d chain B Region: 2 - 233 Aligned: 232 Modelled: 232 Confidence: 100.0% Identity: 100% PDB header:dna binding protein Chain: B: PDB Molecule:dna repair protein reco; PDBTitle: e. coli reco complex with ssb c-terminus Phyre2 PDB 1u5k chain A Region: 3 - 233 Aligned: 218 Modelled: 231 Confidence: 100.0% Identity: 17% PDB header:recombination,replication Chain: A: PDB Molecule:hypothetical protein; PDBTitle: recombinational repair protein reco Phyre2 PDB 1u5k chain A domain 2 Region: 82 - 227 Aligned: 140 Modelled: 146 Confidence: 99.9% Identity: 16% Fold: ArfGap/RecO-like zinc finger Superfamily: ArfGap/RecO-like zinc finger Family: RecO C-terminal domain-like Phyre2 PDB 1u5k chain A domain 1 Region: 6 - 74 Aligned: 66 Modelled: 69 Confidence: 98.4% Identity: 15% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: RecO N-terminal domain-like Phyre2 PDB 2dlo chain A domain 1 Region: 143 - 161 Aligned: 19 Modelled: 19 Confidence: 30.9% Identity: 26% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1ibi chain A domain 2 Region: 150 - 161 Aligned: 12 Modelled: 12 Confidence: 27.3% Identity: 33% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1rut chain X domain 1 Region: 147 - 161 Aligned: 15 Modelled: 15 Confidence: 26.2% Identity: 33% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 2d9l chain A Region: 136 - 178 Aligned: 39 Modelled: 43 Confidence: 25.7% Identity: 15% PDB header:gene regulation Chain: A: PDB Molecule:nucleoporin-like protein rip; PDBTitle: solution structure of the arfgap domain of human rip Phyre2 PDB 2p57 chain A Region: 137 - 178 Aligned: 38 Modelled: 42 Confidence: 24.3% Identity: 13% PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein Phyre2 PDB 1m3v chain A domain 1 Region: 145 - 169 Aligned: 24 Modelled: 25 Confidence: 23.7% Identity: 21% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 3iz5 chain Z Region: 148 - 171 Aligned: 24 Modelled: 24 Confidence: 23.5% Identity: 17% PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein l24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 3izc chain Z Region: 148 - 171 Aligned: 24 Modelled: 24 Confidence: 22.5% Identity: 8% PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein rpl24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 4a1e chain T Region: 148 - 171 Aligned: 24 Modelled: 24 Confidence: 22.2% Identity: 13% PDB header:ribosome Chain: T: PDB Molecule:rpl24; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 Phyre2 PDB 1j2o chain A domain 1 Region: 147 - 161 Aligned: 15 Modelled: 15 Confidence: 22.0% Identity: 20% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 1dcq chain A domain 2 Region: 137 - 178 Aligned: 38 Modelled: 42 Confidence: 21.4% Identity: 11% Fold: ArfGap/RecO-like zinc finger Superfamily: ArfGap/RecO-like zinc finger Family: Pyk2-associated protein beta ARF-GAP domain Phyre2 PDB 2owa chain B Region: 137 - 178 Aligned: 38 Modelled: 42 Confidence: 21.1% Identity: 8% PDB header:protein transport Chain: B: PDB Molecule:arfgap-like finger domain containing protein; PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040) Phyre2 PDB 1m4m chain A Region: 139 - 160 Aligned: 22 Modelled: 22 Confidence: 20.8% Identity: 9% Fold: Inhibitor of apoptosis (IAP) repeat Superfamily: Inhibitor of apoptosis (IAP) repeat Family: Inhibitor of apoptosis (IAP) repeat Phyre2 PDB 3o47 chain A Region: 137 - 178 Aligned: 38 Modelled: 38 Confidence: 20.3% Identity: 11% PDB header:hydrolase, hydrolase activator Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp- PDBTitle: crystal structure of arfgap1-arf1 fusion protein Phyre2 PDB 2iqj chain B Region: 137 - 178 Aligned: 38 Modelled: 42 Confidence: 19.8% Identity: 16% PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like Phyre2 PDB 2zkr chain U Region: 149 - 171 Aligned: 23 Modelled: 23 Confidence: 19.5% Identity: 26% PDB header:ribosomal protein/rna Chain: U: PDB Molecule:rna expansion segment es41; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 1 c3q8dB_ 2 c1u5kA_ 3 d1u5ka2 4 d1u5ka1 5 d2dloa1 6 d1ibia2 7 d1rutx1 8 c2d9lA_ 9 c2p57A_ 10 d1m3va1 11 c3iz5Z_ 12 c3izcZ_ 13 c4a1eT_ 14 d1j2oa1 15 d1dcqa2 16 c2owaB_ 17 d1m4ma_ 18 c3o47A_ 19 c2iqjB_ 20 c2zkru_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3q8dB_ 100.0 100 PDB header:dna binding protein Chain: B: PDB Molecule:dna repair protein reco; PDBTitle: e. coli reco complex with ssb c-terminus 2 c1u5kA_ 100.0 17 PDB header:recombination,replication Chain: A: PDB Molecule:hypothetical protein; PDBTitle: recombinational repair protein reco 3 d1u5ka2 99.9 16 Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:RecO C-terminal domain-like 4 d1u5ka1 98.4 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecO N-terminal domain-like 5 d2dloa1 30.9 26 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 6 d1ibia2 27.3 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 7 d1rutx1 26.2 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 8 c2d9lA_ 25.7 15 PDB header:gene regulation Chain: A: PDB Molecule:nucleoporin-like protein rip; PDBTitle: solution structure of the arfgap domain of human rip 9 c2p57A_ 24.3 13 PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein 10 d1m3va1 23.7 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 11 c3iz5Z_ 23.5 17 PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein l24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 12 c3izcZ_ 22.5 8 PDB header:ribosome Chain: Z: PDB Molecule:60s ribosomal protein rpl24 (l24e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 13 c4a1eT_ 22.2 13 PDB header:ribosome Chain: T: PDB Molecule:rpl24; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 14 d1j2oa1 22.0 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 15 d1dcqa2 21.4 11 Fold:ArfGap/RecO-like zinc finger Superfamily:ArfGap/RecO-like zinc finger Family:Pyk2-associated protein beta ARF-GAP domain 16 c2owaB_ 21.1 8 PDB header:protein transport Chain: B: PDB Molecule:arfgap-like finger domain containing protein; PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040) 17 d1m4ma_ 20.8 9 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 18 c3o47A_ 20.3 11 PDB header:hydrolase, hydrolase activator Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp- PDBTitle: crystal structure of arfgap1-arf1 fusion protein 19 c2iqjB_ 19.8 16 PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like 20 c2zkru_ 19.5 26 PDB header:ribosomal protein/rna Chain: U: PDB Molecule:rna expansion segment es41; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 21 c3lvrE_ not modelled 19.4 13 PDB header:protein transport Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium 22 d2ds5a1 not modelled 16.9 7 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:ClpX chaperone zinc binding domain 23 c3mhsE_ not modelled 16.3 25 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 24 c1ovxB_ not modelled 16.3 7 PDB header:metal binding protein Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer 25 c3dwdB_ not modelled 15.6 11 PDB header:transport protein Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1; PDBTitle: crystal structure of the arfgap domain of human arfgap1 26 c1s1iS_ not modelled 15.0 9 PDB header:ribosome Chain: S: PDB Molecule:60s ribosomal protein l24-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 27 d2cupa3 not modelled 14.7 15 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 28 c3k7aM_ not modelled 14.4 15 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 29 c2ds8A_ not modelled 14.0 8 PDB header:metal binding protein, protein binding Chain: A: PDB Molecule:atp-dependent clp protease atp-binding subunit PDBTitle: structure of the zbd-xb complex 30 c3na7A_ not modelled 13.9 12 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 31 d1vqou1 not modelled 13.9 14 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Ribosomal protein L24e 32 c3ccjU_ not modelled 13.9 14 PDB header:ribosome Chain: U: PDB Molecule:50s ribosomal protein l24e; PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2534u 33 d2qfaa1 not modelled 13.6 9 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 34 c1x6aA_ not modelled 13.4 12 PDB header:protein binding Chain: A: PDB Molecule:lim domain kinase 2; PDBTitle: solution structures of the second lim domain of human lim-2 kinase 2 (limk2) 35 d1vd4a_ not modelled 13.0 9 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 36 d2raxa1 not modelled 12.9 9 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 37 d2cora1 not modelled 12.8 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 38 d1xb0b_ not modelled 12.4 23 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 39 c2b0oF_ not modelled 11.9 13 PDB header:metal binding protein Chain: F: PDB Molecule:uplc1; PDBTitle: crystal structure of uplc1 gap domain 40 c1dcqA_ not modelled 11.1 11 PDB header:metal binding protein Chain: A: PDB Molecule:pyk2-associated protein beta; PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta. 41 c2dloA_ not modelled 11.0 28 PDB header:cell adhesion Chain: A: PDB Molecule:thyroid receptor-interacting protein 6; PDBTitle: solution structure of the second lim domain of human2 thyroid receptor-interacting protein 6 42 c3fehA_ not modelled 10.9 18 PDB header:hydrolase activator Chain: A: PDB Molecule:centaurin-alpha-1; PDBTitle: crystal structure of full length centaurin alpha-1 43 c2co8A_ not modelled 10.8 10 PDB header:metal binding protein Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: solution structures of the lim domain of human nedd92 interacting protein with calponin homology and lim domains 44 d2qam01 not modelled 10.6 20 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 45 d1qbha_ not modelled 9.9 23 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 46 d1tfqa_ not modelled 9.9 27 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 47 d1q4qa_ not modelled 9.9 27 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 48 d1x3ha1 not modelled 9.8 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 49 d2j0151 not modelled 9.7 6 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 50 d2zjrz1 not modelled 9.6 19 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 51 c2kgoA_ not modelled 9.6 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ybii; PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402 52 d2vsla1 not modelled 9.4 27 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 53 c3dzuD_ not modelled 8.9 29 PDB header:transcription/dna Chain: D: PDB Molecule:peroxisome proliferator-activated receptor gamma; PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with bvt.13, 9-cis retinoic acid and ncoa2 peptide 54 c1oy7C_ not modelled 8.9 14 PDB header:apoptosis/peptide Chain: C: PDB Molecule:baculoviral iap repeat-containing protein 7; PDBTitle: structure and function analysis of peptide antagonists of melanoma2 inhibitor of apoptosis (ml-iap) 55 d2aqaa1 not modelled 8.8 17 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 56 c2poiA_ not modelled 8.7 27 PDB header:signaling protein/apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4; PDBTitle: crystal structure of xiap bir1 domain (i222 form) 57 d1v4aa2 not modelled 8.6 14 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:GlnE-like domain 58 d1u5sb1 not modelled 8.6 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 59 c2joxA_ not modelled 8.6 38 PDB header:transcription Chain: A: PDB Molecule:churchill protein; PDBTitle: embryonic neural inducing factor churchill is not a dna-2 binding zinc finger protein: solution structure reveals a3 solvent-exposed beta-sheet and zinc binuclear cluster 60 c2k5cA_ not modelled 8.3 25 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 61 c2vm5A_ not modelled 8.3 18 PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1; PDBTitle: human bir2 domain of baculoviral inhibitor of apoptosis2 repeat-containing 1 (birc1) 62 c2p9lD_ not modelled 8.2 21 PDB header:structural protein Chain: D: PDB Molecule:actin-related protein 2/3 complex subunit 2; PDBTitle: crystal structure of bovine arp2/3 complex 63 c2kaeA_ not modelled 8.2 21 PDB header:transcription/dna Chain: A: PDB Molecule:gata-type transcription factor; PDBTitle: data-driven model of med1:dna complex 64 d1rutx3 not modelled 8.0 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 65 d2apob1 not modelled 8.0 18 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 66 d1u5sb2 not modelled 7.9 30 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 67 c3m0aD_ not modelled 7.9 32 PDB header:signaling protein Chain: D: PDB Molecule:baculoviral iap repeat-containing protein 3; PDBTitle: crystal structure of traf2:ciap2 complex 68 d1osxa_ not modelled 7.9 25 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:BAFF receptor-like 69 d1g73d_ not modelled 7.8 27 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 70 d1i3oe_ not modelled 7.7 27 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 71 d1jd5a_ not modelled 7.7 27 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 72 c1ibiA_ not modelled 7.6 22 PDB header:metal binding protein Chain: A: PDB Molecule:cysteine-rich protein 2; PDBTitle: quail cysteine and glycine-rich protein, nmr, 15 minimized2 model structures 73 c1x64A_ not modelled 7.4 12 PDB header:contractile protein Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein; PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein 74 d1k8kd2 not modelled 7.4 23 Fold:Secretion chaperone-like Superfamily:Arp2/3 complex subunits Family:Arp2/3 complex subunits 75 c2gviA_ not modelled 7.2 16 PDB header:oxidoreductase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution 76 c1hk8A_ not modelled 7.2 15 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 77 d1hk8a_ not modelled 7.2 15 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 78 c1imlA_ not modelled 7.0 11 PDB header:metal-binding protein Chain: A: PDB Molecule:cysteine rich intestinal protein; PDBTitle: cysteine rich intestinal protein, nmr, 48 structures 79 d2ey4e1 not modelled 6.9 23 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 80 c1p0tq_ not modelled 6.8 25 PDB header:protein binding Chain: Q: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: crystal structure of the baff-baff-r complex (part ii) 81 c3dwlI_ not modelled 6.7 31 PDB header:structural protein Chain: I: PDB Molecule:actin-related protein 2/3 complex subunit 2; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 82 c2kq9A_ not modelled 6.7 21 PDB header:transcription Chain: A: PDB Molecule:dnak suppressor protein; PDBTitle: solution structure of dnak suppressor protein from2 agrobacterium tumefaciens c58. northeast structural3 genomics consortium target att12/ontario center for4 structural proteomics target atc0888 83 d1oqen_ not modelled 6.7 25 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:BAFF receptor-like 84 d2dara2 not modelled 6.7 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 85 c1tjlD_ not modelled 6.7 23 PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli 86 d1xpaa2 not modelled 6.4 14 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain 87 c3jueA_ not modelled 6.4 10 PDB header:protein transport/endocytosis Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain- PDBTitle: crystal structure of arfgap and ank repeat domain of acap1 88 d1oqek_ not modelled 6.3 25 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:BAFF receptor-like 89 d2dloa2 not modelled 6.3 15 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 90 d1te5a_ not modelled 6.3 8 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 91 d1wyha1 not modelled 6.2 24 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 92 c2eheA_ not modelled 6.1 9 PDB header:structural protein Chain: A: PDB Molecule:four and a half lim domains 3; PDBTitle: solution structure of the first lim domain from human four2 and a half lim domains protein 3 93 c3d00A_ not modelled 6.1 21 PDB header:metal binding protein Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e; PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution 94 d1xb0a_ not modelled 6.0 24 Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat 95 c2yqpA_ not modelled 5.8 33 PDB header:gene regulation, hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx59; PDBTitle: solution structure of the zf-hit domain in dead (asp-glu-2 ala-asp) box polypeptide 59 96 c3hvzB_ not modelled 5.5 35 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 97 d2dara1 not modelled 5.5 23 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 98 c2o13A_ not modelled 5.4 22 PDB header:metal binding protein Chain: A: PDB Molecule:muscle lim protein; PDBTitle: solution structure of the c-terminal lim domain of mlp/crp3 99 c1nnjA_ not modelled 5.4 17 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0