Email l.a.kelley@imperial.ac.uk Description P0AEB5 Date Thu Jan 5 11:22:57 GMT 2012 Unique Job ID f33af5eed1f26a29

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vv5D_ 100.0 22 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 2 d2vv5a2 99.7 20 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 3 d2vv5a1 99.7 27 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 4 d2vv5a3 98.9 21 Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region 5 d2hqha1 77.2 30 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 6 d1nppa2 74.7 39 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 7 d1nz9a_ 74.5 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 8 c2e6zA_ 73.3 17 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 9 c2kvqG_ 71.4 26 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 10 c2jvvA_ 71.4 26 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 11 c2zkrt_ 61.5 15 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 12 d2coya1 57.1 32 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 13 c3p8bB_ 52.7 17 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 14 c3cnrA_ 52.3 15 PDB header:unknown function Chain: A: PDB Molecule:type iv fimbriae assembly protein; PDBTitle: crystal structure of pilz (xac1133) from xanthomonas2 axonopodis pv citri 15 d1whka_ 50.7 20 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 16 d2cqaa1 50.4 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 17 d2eyqa1 48.1 22 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 18 d2gvha1 47.4 20 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 19 d1y7ua1 45.1 20 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 20 d1whma_ 44.7 20 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 21 c2gvhC_ not modelled 44.5 23 PDB header:hydrolase Chain: C: PDB Molecule:agr_l_2016p; PDBTitle: crystal structure of acyl-coa hydrolase (15159470) from agrobacterium2 tumefaciens at 2.65 a resolution 22 c4a1cS_ not modelled 43.7 18 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 23 c1dvpA_ not modelled 39.7 17 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 24 d1vqot1 not modelled 38.8 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 25 d1u0la1 not modelled 38.5 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 26 d1vpma_ not modelled 37.5 23 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 27 c1m1gB_ not modelled 36.7 39 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 28 d2cp6a1 not modelled 36.3 29 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 29 d2g50a1 not modelled 35.6 14 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 30 c3b7kA_ not modelled 35.4 17 PDB header:hydrolase Chain: A: PDB Molecule:acyl-coenzyme a thioesterase 12; PDBTitle: human acyl-coenzyme a thioesterase 12 31 d2e3ia1 not modelled 35.3 24 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 32 c1mv3A_ not modelled 34.7 20 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc 33 c2rcnA_ not modelled 34.5 23 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 34 d1t9ha1 not modelled 34.4 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 35 c3iz5Y_ not modelled 33.3 23 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 36 d2cp5a1 not modelled 33.2 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 37 c2qq2C_ not modelled 32.9 20 PDB header:hydrolase Chain: C: PDB Molecule:cytosolic acyl coenzyme a thioester hydrolase; PDBTitle: crystal structure of c-terminal domain of human acyl-coa thioesterase2 7 38 d1e0ta1 not modelled 32.5 19 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 39 d2cp0a1 not modelled 32.5 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 40 d1ylia1 not modelled 31.4 30 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 41 d2coza1 not modelled 28.3 26 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 42 d2do3a1 not modelled 28.3 16 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 43 d2cp2a1 not modelled 28.1 24 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 44 d1whja_ not modelled 27.9 23 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 45 c2yv5A_ not modelled 27.5 16 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 46 c2e4hA_ not modelled 27.0 30 PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail 47 d1pkma1 not modelled 27.0 16 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 48 c2eisA_ not modelled 26.4 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tthb207; PDBTitle: x-ray structure of acyl-coa hydrolase-like protein, tt1379, from2 thermus thermophilus hb8 49 d1pkla1 not modelled 26.2 19 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 50 c2z0wA_ not modelled 25.5 19 PDB header:protein binding Chain: A: PDB Molecule:cap-gly domain-containing linker protein 4; PDBTitle: crystal structure of the 2nd cap-gly domain in human restin-2 like protein 2 reveals a swapped-dimer 51 d1vqoq1 not modelled 25.3 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 52 d2cp3a1 not modelled 24.9 24 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 53 d2gvha2 not modelled 24.9 23 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:4HBT-like 54 d2e3ha1 not modelled 24.7 29 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 55 d2bi0a1 not modelled 24.3 22 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 56 c3d6lA_ not modelled 24.2 27 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of cj0915, a hexameric hotdog fold2 thioesterase of campylobacter jejuni 57 c2v1oF_ not modelled 23.9 7 PDB header:hydrolase Chain: F: PDB Molecule:cytosolic acyl coenzyme a thioester hydrolase; PDBTitle: crystal structure of n-terminal domain of acyl-coa2 thioesterase 7 58 c2dxcG_ not modelled 23.6 41 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 59 c1oy8A_ not modelled 22.8 15 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 60 d2cowa1 not modelled 22.7 17 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 61 d1whha_ not modelled 22.6 21 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 62 c2qqsB_ not modelled 22.1 10 PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide 63 c3mlcC_ not modelled 21.8 20 PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate 64 d1yeza1 not modelled 21.6 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 65 c3h0mE_ not modelled 21.3 10 PDB header:ligase Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus 66 c3qz9D_ not modelled 20.7 45 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 67 d1v6ga2 not modelled 20.2 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 68 c2k4kA_ not modelled 19.2 11 PDB header:rna binding protein Chain: A: PDB Molecule:general stress protein 13; PDBTitle: solution structure of gsp13 from bacillus subtilis 69 d1yvca1 not modelled 19.0 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain 70 d1ppje2 not modelled 18.8 24 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 71 d1s04a_ not modelled 18.6 26 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 72 c2khjA_ not modelled 18.1 15 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 73 c2kcuA_ not modelled 18.1 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ctr107; PDBTitle: nmr solution structure of an uncharacterized protein from2 chlorobium tepidum. northeast structural genomics target3 ctr107 74 d1a3xa1 not modelled 17.7 19 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 75 c3pifD_ not modelled 17.5 28 PDB header:hydrolase Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1); PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese 76 d1liua1 not modelled 17.4 32 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 77 c1u0lB_ not modelled 16.2 23 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 78 d2z0sa1 not modelled 16.2 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 79 d1v29b_ not modelled 15.8 36 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 80 c2xdpA_ not modelled 14.7 6 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 4c; PDBTitle: crystal structure of the tudor domain of human jmjd2c 81 d2j01t1 not modelled 14.6 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 82 c1s1iU_ not modelled 14.1 18 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 83 c2xhcA_ not modelled 14.0 23 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 84 d1i9ga_ not modelled 13.5 42 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 85 d1bcce2 not modelled 13.0 24 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 86 d3bzka4 not modelled 12.6 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 87 d1sroa_ not modelled 12.6 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 88 d1oqka_ not modelled 12.5 30 Fold:Rof/RNase P subunit-like Superfamily:Rof/RNase P subunit-like Family:RNase P subunit p29-like 89 d2je6i1 not modelled 12.4 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 90 d1xnea_ not modelled 12.4 30 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 91 c3a35B_ not modelled 12.3 10 PDB header:luminescent protein Chain: B: PDB Molecule:lumazine protein; PDBTitle: crystal structure of lump complexed with riboflavin 92 c1t9hA_ not modelled 12.3 27 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 93 c3iz5U_ not modelled 12.2 17 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 94 d1ugpb_ not modelled 12.1 52 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 95 d2qdya1 not modelled 12.1 11 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 96 c1t0jA_ not modelled 12.0 14 PDB header:signaling protein Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a; PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit 97 d2zjrm1 not modelled 11.7 18 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L19 98 c2z0sA_ not modelled 11.6 13 PDB header:rna binding protein Chain: A: PDB Molecule:probable exosome complex rna-binding protein 1; PDBTitle: crystal structure of putative exosome complex rna-binding2 protein 99 d2p13a1 not modelled 11.5 13 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like