Secondary structure and disorder prediction

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Sequence		M	S	Q	T	E	N	A	V	T	S	S	S	G	N	K	R	A	Y	R	K	G	N	P	V	P	A	R	E	R	Q	R	A	S	L	A	R	R	S	N	T	H	K	A	F	H	A	V	I	Q	A	R	L	K	D	R	L	S	E	L	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Sequence		D	E	E	G	I	T	Q	A	Q	M	L	E	K	L	I	E	S	E	L	K	R	R	A	T	L
Secondary structure
SS confidence
Disorder																							?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kel chain B Region: 44 - 83 Aligned: 40 Modelled: 40 Confidence: 78.8% Identity: 25% PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 Phyre2 PDB 2k29 chain A Region: 44 - 83 Aligned: 40 Modelled: 40 Confidence: 71.4% Identity: 20% PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb Phyre2 PDB 1rio chain A Region: 20 - 74 Aligned: 38 Modelled: 37 Confidence: 65.0% Identity: 34% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 2keb chain A Region: 38 - 75 Aligned: 38 Modelled: 38 Confidence: 62.1% Identity: 24% PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit Phyre2 PDB 3op9 chain A Region: 48 - 74 Aligned: 27 Modelled: 27 Confidence: 51.6% Identity: 37% PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua Phyre2 PDB 1r69 chain A Region: 52 - 74 Aligned: 23 Modelled: 23 Confidence: 45.3% Identity: 22% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 3f6w chain E Region: 42 - 74 Aligned: 33 Modelled: 33 Confidence: 44.9% Identity: 33% PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000 Phyre2 PDB 1y9q chain A domain 1 Region: 46 - 74 Aligned: 29 Modelled: 27 Confidence: 43.6% Identity: 10% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Probable transcriptional regulator VC1968, N-terminal domain Phyre2 PDB 1b0n chain A domain 2 Region: 52 - 74 Aligned: 23 Modelled: 23 Confidence: 43.1% Identity: 22% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: SinR domain-like Phyre2 PDB 2xcj chain B Region: 50 - 74 Aligned: 25 Modelled: 25 Confidence: 42.9% Identity: 8% PDB header:viral protein Chain: B: PDB Molecule:c protein; PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2 Phyre2 PDB 1sq8 chain A Region: 52 - 74 Aligned: 23 Modelled: 23 Confidence: 39.9% Identity: 22% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 3cec chain A Region: 54 - 74 Aligned: 21 Modelled: 21 Confidence: 39.7% Identity: 24% PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution Phyre2 PDB 2hyd chain B Region: 20 - 36 Aligned: 17 Modelled: 17 Confidence: 39.6% Identity: 35% PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Phyre2 PDB 3bs3 chain A Region: 54 - 74 Aligned: 21 Modelled: 20 Confidence: 38.3% Identity: 19% PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis Phyre2 PDB 2yl4 chain A Region: 20 - 36 Aligned: 17 Modelled: 17 Confidence: 37.8% Identity: 35% PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 Phyre2 PDB 3b7h chain A Region: 52 - 74 Aligned: 23 Modelled: 23 Confidence: 37.0% Identity: 17% PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 Phyre2 PDB 2yyz chain A Region: 19 - 66 Aligned: 48 Modelled: 48 Confidence: 36.9% Identity: 25% PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein Phyre2 PDB 1lmb chain 3 Region: 43 - 74 Aligned: 32 Modelled: 32 Confidence: 36.9% Identity: 22% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 1adr chain A Region: 52 - 74 Aligned: 23 Modelled: 23 Confidence: 35.9% Identity: 17% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: Phage repressors Phyre2 PDB 3fmy chain A Region: 54 - 74 Aligned: 21 Modelled: 21 Confidence: 35.2% Identity: 14% PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) Phyre2 1 c2kelB_ 2 c2k29A_ 3 d1rioa_ 4 c2kebA_ 5 c3op9A_ 6 d1r69a_ 7 c3f6wE_ 8 d1y9qa1 9 d1b0na2 10 c2xcjB_ 11 d1sq8a_ 12 c3cecA_ 13 c2hydB_ 14 c3bs3A_ 15 c2yl4A_ 16 c3b7hA_ 17 c2yyzA_ 18 d1lmb3_ 19 d1adra_ 20 c3fmyA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kelB_ 78.8 25 PDB header:transcription repressor Chain: B: PDB Molecule:uncharacterized protein 56b; PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1 2 c2k29A_ 71.4 20 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 3 d1rioa_ 65.0 34 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 4 c2kebA_ 62.1 24 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 5 c3op9A_ 51.6 37 PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua 6 d1r69a_ 45.3 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 7 c3f6wE_ 44.9 33 PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000 8 d1y9qa1 43.6 10 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Probable transcriptional regulator VC1968, N-terminal domain 9 d1b0na2 43.1 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 10 c2xcjB_ 42.9 8 PDB header:viral protein Chain: B: PDB Molecule:c protein; PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2 11 d1sq8a_ 39.9 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 12 c3cecA_ 39.7 24 PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution 13 c2hydB_ 39.6 35 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 14 c3bs3A_ 38.3 19 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 15 c2yl4A_ 37.8 35 PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 16 c3b7hA_ 37.0 17 PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 17 c2yyzA_ 36.9 25 PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein 18 d1lmb3_ 36.9 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 19 d1adra_ 35.9 17 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 20 c3fmyA_ 35.2 14 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) 21 c2kpjA_ not modelled 34.7 15 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 22 c2ewtA_ not modelled 34.4 21 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of the dna-binding domain of bldd 23 d1y7ya1 not modelled 34.3 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 24 c3t76A_ not modelled 34.0 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii 25 d1h1js_ not modelled 33.6 13 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 26 c3b5xB_ not modelled 33.6 35 PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae 27 d2hzab1 not modelled 33.3 16 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 28 c3b5wE_ not modelled 31.8 35 PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba 29 c2ef8A_ not modelled 30.7 27 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcription factor; PDBTitle: crystal structure of c.ecot38is 30 c3omtA_ not modelled 29.9 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae. 31 c2kslA_ not modelled 27.8 42 PDB header:toxin Chain: A: PDB Molecule:u1-agatoxin-ta1a; PDBTitle: structure of the insecticidal toxin taitx-1 32 c3kk4B_ not modelled 27.6 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bp1543; PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i 33 c3h8kB_ not modelled 26.1 40 PDB header:ligase Chain: B: PDB Molecule:autocrine motility factor receptor, isoform 2; PDBTitle: crystal structure of ube2g2 complxed with the g2br domain of2 gp78 at 1.8-a resolution 34 d2b5aa1 not modelled 25.7 13 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 35 c3lisB_ not modelled 24.5 24 PDB header:transcription Chain: B: PDB Molecule:csp231i c protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form) 36 d2bj7a1 not modelled 23.7 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 37 c1y9qA_ not modelled 23.6 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae 38 d2hzaa1 not modelled 22.9 18 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 39 d2croa_ not modelled 21.6 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 40 c2k5jB_ not modelled 20.6 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 41 c3dnvB_ not modelled 19.9 22 PDB header:transcription/dna Chain: B: PDB Molecule:hth-type transcriptional regulator hipb; PDBTitle: mdt protein 42 d1ehia2 not modelled 19.9 25 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 43 d1x57a1 not modelled 19.7 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:EDF1-like 44 c1kcfB_ not modelled 19.6 15 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2 45 d1jj7a_ not modelled 19.3 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 46 c1q5vB_ not modelled 19.0 18 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 47 c1oxtB_ not modelled 18.1 19 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus 48 c3eusB_ not modelled 18.0 39 PDB header:dna binding protein Chain: B: PDB Molecule:dna-binding protein; PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi 49 c2fjrB_ not modelled 17.6 18 PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 50 c2ca9B_ not modelled 17.5 21 PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation 51 c3trbA_ not modelled 17.4 29 PDB header:dna binding protein Chain: A: PDB Molecule:virulence-associated protein i; PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii 52 c2uwjG_ not modelled 17.1 36 PDB header:chaperone Chain: G: PDB Molecule:type iii export protein pscg; PDBTitle: structure of the heterotrimeric complex which regulates2 type iii secretion needle formation 53 c2ebyA_ not modelled 16.7 21 PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq; PDBTitle: crystal structure of a hypothetical protein from e. coli 54 c2it1B_ not modelled 15.8 23 PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii 55 d1g2912 not modelled 15.6 27 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 56 c2kvuA_ not modelled 15.3 13 PDB header:transcription regulator Chain: A: PDB Molecule:mkl/myocardin-like protein 1; PDBTitle: solution nmr structure of sap domain of mkl/myocardin-like2 protein 1 from h.sapiens, northeast structural genomics3 consortium target target hr4547e 57 d2a6ca1 not modelled 14.9 32 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 58 d1utxa_ not modelled 14.8 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 59 c3fvqB_ not modelled 14.7 19 PDB header:hydrolase Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc; PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp 60 c3clcC_ not modelled 14.7 18 PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator 61 d1e4ea2 not modelled 14.3 24 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 62 c1s16B_ not modelled 13.8 15 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of e. coli topoisomerase iv pare 43kda subunit2 complexed with adpnp 63 c3mlfC_ not modelled 13.6 23 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: putative transcriptional regulator from staphylococcus aureus. 64 c1z47B_ not modelled 13.6 25 PDB header:ligand binding protein Chain: B: PDB Molecule:putative abc-transporter atp-binding protein; PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius 65 c3bdnB_ not modelled 13.2 29 PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor 66 d1llib_ not modelled 13.0 21 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 67 c2d62A_ not modelled 12.6 21 PDB header:sugar binding protein Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein 68 c3ivpD_ not modelled 12.5 18 PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. 69 c2o38A_ not modelled 12.1 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: putative xre family transcriptional regulator 70 d2o38a1 not modelled 12.1 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354 71 d2r1jl1 not modelled 11.9 17 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 72 c3g5uB_ not modelled 11.7 35 PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding 73 c1b0nA_ not modelled 11.7 22 PDB header:transcription regulator Chain: A: PDB Molecule:protein (sinr protein); PDBTitle: sinr protein/sini protein complex 74 c3f52A_ not modelled 11.4 22 PDB header:transcription activator Chain: A: PDB Molecule:clp gene regulator (clgr); PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum 75 c2bj3D_ not modelled 11.1 21 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 76 c3kxaD_ not modelled 10.9 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae 77 c1vciA_ not modelled 10.9 19 PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp 78 d1wgna_ not modelled 10.6 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 79 d2icta1 not modelled 9.9 19 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 80 c1e4eB_ not modelled 9.8 23 PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase 81 c3tqtB_ not modelled 9.5 22 PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii 82 c3i12A_ not modelled 9.5 26 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 83 c3adjA_ not modelled 9.3 22 PDB header:gene regulation Chain: A: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing 84 c2i80B_ not modelled 9.2 26 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies 85 c3gm8A_ not modelled 8.2 18 PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase; PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus 86 c2w62A_ not modelled 8.1 16 PDB header:transferase Chain: A: PDB Molecule:glycolipid-anchored surface protein 2; PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose 87 d1u5ta2 not modelled 8.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 88 c3se7A_ not modelled 8.1 16 PDB header:ligase Chain: A: PDB Molecule:vana; PDBTitle: ancient vana 89 c1wwuA_ not modelled 7.8 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein flj21935; PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935 90 d1tc3c_ not modelled 7.7 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 91 d3d31a2 not modelled 7.7 27 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 92 d1ayea2 not modelled 7.4 10 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 93 c2krfB_ not modelled 6.9 13 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein coma; PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a 94 d1pcaa1 not modelled 6.9 7 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Pancreatic carboxypeptidase, activation domain 95 d1pf4a1 not modelled 6.8 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 96 d1rfza_ not modelled 6.7 23 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 97 d1v43a3 not modelled 6.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 98 c2k9iB_ not modelled 6.5 28 PDB header:dna binding protein Chain: B: PDB Molecule:plasmid prn1, complete sequence; PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus 99 c2pzfB_ not modelled 6.4 33 PDB header:hydrolase Chain: B: PDB Molecule:cystic fibrosis transmembrane conductance regulator; PDBTitle: minimal human cftr first nucleotide binding domain as a head-to-tail2 dimer with delta f508

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0