Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	N	S	P	R	V	C	I	Q	V	Q	S	V	Y	I	E	A	Q	S	S	P	D	N	E	R	Y	V	F	A	Y	T	V	T	I	R	N	L	G	R	A	P	V	Q	L	L	G	R	Y	W	L	I	T	N	G	N	G	R	E	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?									?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	V	Q	G	E	G	V	V	G	V	Q	P	L	I	A	P	G	E	E	Y	Q	Y	T	S	G	A	I	I	E	T	P	L	G	T	M	Q	G	H	Y	E	M	I	D	E	N	G	V	P	F	S	I	D	I	P	V	F	R	L	A	V
Secondary structure
SS confidence
Disorder			?	?																										?	?	?																													?
Disorder confidence
		.	.	.	.	.
Sequence		P	T	L	I	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tza chain A Region: 3 - 125 Aligned: 123 Modelled: 123 Confidence: 100.0% Identity: 47% Fold: Immunoglobulin-like beta-sandwich Superfamily: ApaG-like Family: ApaG-like Phyre2 PDB 1xq4 chain A Region: 2 - 123 Aligned: 122 Modelled: 122 Confidence: 100.0% Identity: 47% Fold: Immunoglobulin-like beta-sandwich Superfamily: ApaG-like Family: ApaG-like Phyre2 PDB 1xvs chain A Region: 2 - 123 Aligned: 122 Modelled: 122 Confidence: 100.0% Identity: 51% Fold: Immunoglobulin-like beta-sandwich Superfamily: ApaG-like Family: ApaG-like Phyre2 PDB 2f1e chain A Region: 6 - 119 Aligned: 114 Modelled: 114 Confidence: 100.0% Identity: 48% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein Phyre2 PDB 3cfu chain A Region: 2 - 116 Aligned: 99 Modelled: 100 Confidence: 81.2% Identity: 13% PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 Phyre2 PDB 3cg8 chain B Region: 32 - 83 Aligned: 44 Modelled: 52 Confidence: 79.2% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:laccase; PDBTitle: laccase from streptomyces coelicolor Phyre2 PDB 3cdz chain B Region: 32 - 83 Aligned: 44 Modelled: 47 Confidence: 70.2% Identity: 23% PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii light chain; PDBTitle: crystal structure of human factor viii Phyre2 PDB 2r7e chain B Region: 32 - 83 Aligned: 44 Modelled: 52 Confidence: 67.6% Identity: 23% PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii; PDBTitle: crystal structure analysis of coagulation factor viii Phyre2 PDB 2uxt chain A Region: 32 - 96 Aligned: 53 Modelled: 65 Confidence: 64.5% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:protein sufi; PDBTitle: sufi protein from escherichia coli Phyre2 PDB 3rfr chain I Region: 7 - 114 Aligned: 95 Modelled: 108 Confidence: 64.3% Identity: 19% PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m Phyre2 PDB 1cuo chain A Region: 32 - 102 Aligned: 71 Modelled: 71 Confidence: 63.1% Identity: 21% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 2x3b chain B Region: 32 - 83 Aligned: 52 Modelled: 52 Confidence: 63.0% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:toxic extracellular endopeptidase; PDBTitle: asap1 inactive mutant e294a, an extracellular toxic zinc2 metalloendopeptidase Phyre2 PDB 1lm8 chain V Region: 32 - 85 Aligned: 40 Modelled: 54 Confidence: 60.0% Identity: 25% Fold: Prealbumin-like Superfamily: VHL Family: VHL Phyre2 PDB 1sdd chain A Region: 32 - 83 Aligned: 52 Modelled: 52 Confidence: 59.9% Identity: 17% PDB header:blood clotting Chain: A: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai Phyre2 PDB 1hfu chain A domain 2 Region: 30 - 81 Aligned: 48 Modelled: 52 Confidence: 59.5% Identity: 21% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Multidomain cupredoxins Phyre2 PDB 2fqe chain A Region: 32 - 83 Aligned: 42 Modelled: 52 Confidence: 57.8% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:blue copper oxidase cueo; PDBTitle: crystal structures of e. coli laccase cueo under different2 copper binding situations Phyre2 PDB 1l9m chain B Region: 2 - 83 Aligned: 62 Modelled: 82 Confidence: 56.2% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation Phyre2 PDB 1nep chain A Region: 74 - 120 Aligned: 47 Modelled: 47 Confidence: 55.1% Identity: 15% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: ML domain Phyre2 PDB 3zx1 chain A Region: 32 - 83 Aligned: 42 Modelled: 52 Confidence: 53.8% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, putative; PDBTitle: multicopper oxidase from campylobacter jejuni: a metallo-oxidase Phyre2 PDB 3cdz chain A Region: 32 - 83 Aligned: 52 Modelled: 52 Confidence: 52.8% Identity: 15% PDB header:blood clotting Chain: A: PDB Molecule:coagulation factor viii heavy chain; PDBTitle: crystal structure of human factor viii Phyre2 1 d1tzaa_ 2 d1xq4a_ 3 d1xvsa_ 4 c2f1eA_ 5 c3cfuA_ 6 c3cg8B_ 7 c3cdzB_ 8 c2r7eB_ 9 c2uxtA_ 10 c3rfrI_ 11 d1cuoa_ 12 c2x3bB_ 13 d1lm8v_ 14 c1sddA_ 15 d1hfua2 16 c2fqeA_ 17 c1l9mB_ 18 d1nepa_ 19 c3zx1A_ 20 c3cdzA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1tzaa_ 100.0 47 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 2 d1xq4a_ 100.0 47 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 3 d1xvsa_ 100.0 51 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 4 c2f1eA_ 100.0 48 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein 5 c3cfuA_ 81.2 13 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 6 c3cg8B_ 79.2 18 PDB header:oxidoreductase Chain: B: PDB Molecule:laccase; PDBTitle: laccase from streptomyces coelicolor 7 c3cdzB_ 70.2 23 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii light chain; PDBTitle: crystal structure of human factor viii 8 c2r7eB_ 67.6 23 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii; PDBTitle: crystal structure analysis of coagulation factor viii 9 c2uxtA_ 64.5 11 PDB header:oxidoreductase Chain: A: PDB Molecule:protein sufi; PDBTitle: sufi protein from escherichia coli 10 c3rfrI_ 64.3 19 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 11 d1cuoa_ 63.1 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 12 c2x3bB_ 63.0 23 PDB header:hydrolase Chain: B: PDB Molecule:toxic extracellular endopeptidase; PDBTitle: asap1 inactive mutant e294a, an extracellular toxic zinc2 metalloendopeptidase 13 d1lm8v_ 60.0 25 Fold:Prealbumin-like Superfamily:VHL Family:VHL 14 c1sddA_ 59.9 17 PDB header:blood clotting Chain: A: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai 15 d1hfua2 59.5 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 16 c2fqeA_ 57.8 36 PDB header:oxidoreductase Chain: A: PDB Molecule:blue copper oxidase cueo; PDBTitle: crystal structures of e. coli laccase cueo under different2 copper binding situations 17 c1l9mB_ 56.2 21 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 18 d1nepa_ 55.1 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:ML domain 19 c3zx1A_ 53.8 21 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, putative; PDBTitle: multicopper oxidase from campylobacter jejuni: a metallo-oxidase 20 c3cdzA_ 52.8 15 PDB header:blood clotting Chain: A: PDB Molecule:coagulation factor viii heavy chain; PDBTitle: crystal structure of human factor viii 21 c2xu9A_ not modelled 51.3 24 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase; PDBTitle: crystal structure of laccase from thermus thermophilus hb27 22 c3abgA_ not modelled 50.4 24 PDB header:oxidoreductase Chain: A: PDB Molecule:bilirubin oxidase; PDBTitle: x-ray crystal analysis of bilirubin oxidase from myrothecium2 verrucaria at 2.3 angstrom resolution using a twin crystal 23 c2zwnA_ not modelled 50.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:two-domain type laccase; PDBTitle: crystal structure of the novel two-domain type laccase from a2 metagenome 24 c2k6zA_ not modelled 50.0 37 PDB header:metal transport Chain: A: PDB Molecule:putative uncharacterized protein ttha1943; PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14) 25 c3m7oB_ not modelled 48.7 23 PDB header:immune system Chain: B: PDB Molecule:lymphocyte antigen 86; PDBTitle: crystal structure of mouse md-1 in complex with phosphatidylcholine 26 c3isyA_ not modelled 46.9 16 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 27 d1azca_ not modelled 46.5 24 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 28 d2ccwa1 not modelled 46.2 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 29 d1v10a2 not modelled 45.4 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 30 c1yewI_ not modelled 45.2 24 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 31 c3kw8A_ not modelled 42.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:putative copper oxidase; PDBTitle: two-domain laccase from streptomyces coelicolor at 2.3 a resolution 32 d1ibya_ not modelled 41.6 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 33 d1hc1a3 not modelled 41.3 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arthropod hemocyanin, C-terminal domain 34 c3nrfA_ not modelled 41.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:apag protein; PDBTitle: crystal structure of an apag protein (pa1934) from pseudomonas2 aeruginosa pao1 at 1.50 a resolution 35 c1sddB_ not modelled 40.0 28 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai 36 c3g5wC_ not modelled 39.1 23 PDB header:metal binding protein Chain: C: PDB Molecule:multicopper oxidase type 1; PDBTitle: crystal structure of blue copper oxidase from nitrosomonas europaea 37 d1ufga_ not modelled 38.1 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 38 d2plta_ not modelled 37.4 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 39 c3jt0B_ not modelled 36.9 11 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 40 c1v10A_ not modelled 35.1 17 PDB header:oxidase Chain: A: PDB Molecule:laccase; PDBTitle: structure of rigidoporus lignosus laccase from hemihedrally2 twinned crystals 41 d1cc3a_ not modelled 34.8 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 42 c2bnoA_ not modelled 34.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis. 43 d2j5wa3 not modelled 34.0 32 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 44 c3rgbA_ not modelled 33.9 23 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 45 c2zooA_ not modelled 33.7 17 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125 46 c1wa1X_ not modelled 33.1 17 PDB header:reductase Chain: X: PDB Molecule:dissimilatory copper-containing nitrite PDBTitle: crystal structure of h313q mutant of alcaligenes2 xylosoxidans nitrite reductase 47 d1jzga_ not modelled 31.6 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 48 c2h47C_ not modelled 30.9 24 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:azurin; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 49 d1gyca2 not modelled 30.7 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 50 d1ifra_ not modelled 30.7 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 51 d1joia_ not modelled 30.5 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 52 d1ejxb_ not modelled 29.7 31 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 53 d4ubpb_ not modelled 28.1 31 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 54 d1e9ya1 not modelled 27.0 33 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 55 d1sdda1 not modelled 27.0 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 56 c3mu3A_ not modelled 26.9 13 PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva 57 d2j5wa1 not modelled 25.7 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 58 d1rkra_ not modelled 24.9 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 59 d1nwpa_ not modelled 24.8 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 60 d1kyaa2 not modelled 23.9 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 61 d2q9oa1 not modelled 23.2 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 62 d1hfua1 not modelled 23.1 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 63 d1rutx4 not modelled 21.9 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 64 c1mzzC_ not modelled 21.6 37 PDB header:oxidoreductase Chain: C: PDB Molecule:copper-containing nitrite reductase; PDBTitle: crystal structure of mutant (m182t)of nitrite reductase 65 c3gdcC_ not modelled 21.1 22 PDB header:oxidoreductase Chain: C: PDB Molecule:multicopper oxidase; PDBTitle: crystal structure of multicopper oxidase 66 d1qbaa2 not modelled 21.0 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Bacterial chitobiase, n-terminal domain 67 d1kv7a2 not modelled 20.7 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 68 c1kcwA_ not modelled 20.3 20 PDB header:oxidoreductase Chain: A: PDB Molecule:ceruloplasmin; PDBTitle: x-ray crystal structure of human ceruloplasmin at 3.0 angstroms 69 d1ndsa1 not modelled 20.2 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 70 d1ivta_ not modelled 20.1 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 71 c1e9zA_ not modelled 19.9 33 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 72 d1hcza2 not modelled 19.8 22 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain 73 d1kv7a1 not modelled 19.8 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 74 c3qgaD_ not modelled 19.7 11 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 75 d1aoza2 not modelled 18.8 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 76 d1sddb1 not modelled 17.9 40 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 77 d1oe1a1 not modelled 17.4 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 78 d1exha_ not modelled 16.9 43 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family II 79 d1kbva2 not modelled 16.8 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 80 c2yxwB_ not modelled 16.6 26 PDB header:oxidoreductase Chain: B: PDB Molecule:blue copper oxidase cueo; PDBTitle: the deletion mutant of multicopper oxidase cueo 81 d2q9oa2 not modelled 16.6 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 82 c3orjA_ not modelled 16.3 20 PDB header:sugar binding protein Chain: A: PDB Molecule:sugar-binding protein; PDBTitle: crystal structure of a sugar-binding protein (bacova_04391) from2 bacteroides ovatus at 2.16 a resolution 83 d1kyaa1 not modelled 15.9 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 84 c3h8uA_ not modelled 14.7 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 85 d1v97a4 not modelled 13.4 15 Fold:CO dehydrogenase flavoprotein C-domain-like Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like Family:CO dehydrogenase flavoprotein C-terminal domain-like 86 c3hhsB_ not modelled 13.3 20 PDB header:oxidoreductase Chain: B: PDB Molecule:phenoloxidase subunit 1; PDBTitle: crystal structure of manduca sexta prophenoloxidase 87 d1gyca1 not modelled 13.2 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 88 c1kbwA_ not modelled 13.1 10 PDB header:oxidoreductase Chain: A: PDB Molecule:major outer membrane protein pan 1; PDBTitle: crystal structure of the soluble domain of ania from2 neisseria gonorrhoeae 89 d2ar1a1 not modelled 13.0 17 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 90 d1m1ha1 not modelled 12.9 33 Fold:N-utilization substance G protein NusG, insert domain Superfamily:N-utilization substance G protein NusG, insert domain Family:N-utilization substance G protein NusG, insert domain 91 d1aoza1 not modelled 12.4 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 92 d2bnma2 not modelled 12.2 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like 93 c1asqB_ not modelled 11.8 23 PDB header:oxidoreductase Chain: B: PDB Molecule:ascorbate oxidase; PDBTitle: x-ray structures and mechanistic implications of three functional2 derivatives of ascorbate oxidase from zucchini: reduced-, peroxide-,3 and azide-forms 94 d2fdbm1 not modelled 11.6 13 Fold:beta-Trefoil Superfamily:Cytokine Family:Fibroblast growth factors (FGF) 95 d1llaa3 not modelled 11.5 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arthropod hemocyanin, C-terminal domain 96 c3ixvG_ not modelled 10.6 25 PDB header:oxygen binding Chain: G: PDB Molecule:hemocyanin aa6 chain; PDBTitle: scorpion hemocyanin resting state pseudo atomic model built based on2 cryo-em density map 97 c3d5bN_ not modelled 10.5 14 PDB header:ribosome Chain: N: PDB Molecule:50s ribosomal protein l13; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. 98 d2zjrg1 not modelled 10.5 17 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 99 c3cf5G_ not modelled 10.5 17 PDB header:ribosome/antibiotic Chain: G: PDB Molecule:50s ribosomal protein l13; PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0