Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	D	V	H	D	K	A	T	R	S	K	N	M	R	A	I	A	T	R	D	T	A	I	E	K	R	L	A	S	L	L	T	G	Q	G	L	A	F	R	V	Q	D	A	S	L	P	G	R	P	D	F	V	V	D	E	Y	R	C	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?												?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	F	T	H	G	C	F	W	H	H	H	H	C	Y	L	F	K	V	P	A	T	R	T	E	F	W	L	E	K	I	G	K	N	V	E	R	D	R	R	D	I	S	R	L	Q	E	L	G	W	R	V	L	I	V	W	E	C	A	L	R
Secondary structure
SS confidence
Disorder																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Sequence		G	R	E	K	L	T	D	E	A	L	T	E	R	L	E	E	W	I	C	G	E	G	A	S	A	Q	I	D	T	Q	G	I	H	L	L	A
Secondary structure
SS confidence
Disorder				?																			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1cw0 chain A Region: 2 - 156 Aligned: 155 Modelled: 155 Confidence: 100.0% Identity: 100% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Very short patch repair (VSR) endonuclease Phyre2 PDB 1vsr chain A Region: 24 - 156 Aligned: 133 Modelled: 133 Confidence: 100.0% Identity: 100% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Very short patch repair (VSR) endonuclease Phyre2 PDB 3hrl chain A Region: 20 - 137 Aligned: 89 Modelled: 89 Confidence: 99.9% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:endonuclease-like protein; PDBTitle: crystal structure of a putative endonuclease-like protein (ngo0050)2 from neisseria gonorrhoeae Phyre2 PDB 3fov chain A Region: 25 - 64 Aligned: 40 Modelled: 40 Confidence: 84.3% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris Phyre2 PDB 2fqz chain C Region: 13 - 56 Aligned: 43 Modelled: 44 Confidence: 82.7% Identity: 26% PDB header:hydrolase/dna Chain: C: PDB Molecule:r.ecl18ki; PDBTitle: metal-depleted ecl18ki in complex with uncleaved dna Phyre2 PDB 1m0d chain A Region: 22 - 67 Aligned: 45 Modelled: 46 Confidence: 81.9% Identity: 22% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Endonuclease I (Holliday junction resolvase) Phyre2 PDB 1na6 chain A domain 2 Region: 13 - 56 Aligned: 38 Modelled: 44 Confidence: 60.3% Identity: 26% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Type II restriction endonuclease catalytic domain Phyre2 PDB 1y88 chain A domain 2 Region: 24 - 63 Aligned: 40 Modelled: 40 Confidence: 55.5% Identity: 20% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: MRR-like Phyre2 PDB 3hxk chain B Region: 49 - 114 Aligned: 45 Modelled: 45 Confidence: 54.1% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:sugar hydrolase; PDBTitle: crystal structure of a sugar hydrolase (yeeb) from2 lactococcus lactis, northeast structural genomics3 consortium target kr108 Phyre2 PDB 1uxo chain A Region: 58 - 152 Aligned: 70 Modelled: 95 Confidence: 52.8% Identity: 21% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: YdeN-like Phyre2 PDB 1gef chain A Region: 20 - 63 Aligned: 42 Modelled: 44 Confidence: 47.5% Identity: 21% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 3o3n chain A Region: 63 - 139 Aligned: 60 Modelled: 61 Confidence: 45.3% Identity: 17% PDB header:lyase Chain: A: PDB Molecule:alpha-subunit 2-hydroxyisocaproyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa Phyre2 PDB 3bm3 chain A Region: 9 - 56 Aligned: 48 Modelled: 48 Confidence: 33.8% Identity: 17% PDB header:hydrolase/dna Chain: A: PDB Molecule:pspgi restriction endonuclease; PDBTitle: restriction endonuclease pspgi-substrate dna complex Phyre2 PDB 2o2g chain A Region: 57 - 114 Aligned: 36 Modelled: 36 Confidence: 33.0% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:dienelactone hydrolase; PDBTitle: crystal structure of dienelactone hydrolase (yp_324580.1) from2 anabaena variabilis atcc 29413 at 1.92 a resolution Phyre2 PDB 1ff3 chain C Region: 56 - 69 Aligned: 13 Modelled: 14 Confidence: 32.5% Identity: 31% Fold: Ferredoxin-like Superfamily: Peptide methionine sulfoxide reductase Family: Peptide methionine sulfoxide reductase Phyre2 PDB 1y88 chain A Region: 25 - 63 Aligned: 39 Modelled: 39 Confidence: 30.0% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1548; PDBTitle: crystal structure of protein of unknown function af1548 Phyre2 PDB 1hh1 chain A Region: 22 - 63 Aligned: 39 Modelled: 42 Confidence: 29.7% Identity: 28% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 1fok chain A Region: 21 - 97 Aligned: 71 Modelled: 73 Confidence: 29.4% Identity: 11% PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (foki restriction endonucleas); PDBTitle: structure of restriction endonuclease foki bound to dna Phyre2 PDB 2j89 chain A Region: 51 - 69 Aligned: 19 Modelled: 19 Confidence: 29.2% Identity: 32% PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases Phyre2 PDB 2hih chain B Region: 60 - 156 Aligned: 68 Modelled: 72 Confidence: 29.0% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:lipase 46 kda form; PDBTitle: crystal structure of staphylococcus hyicus lipase Phyre2 1 d1cw0a_ 2 d1vsra_ 3 c3hrlA_ 4 c3fovA_ 5 c2fqzC_ 6 d1m0da_ 7 d1na6a2 8 d1y88a2 9 c3hxkB_ 10 d1uxoa_ 11 d1gefa_ 12 c3o3nA_ 13 c3bm3A_ 14 c2o2gA_ 15 d1ff3c_ 16 c1y88A_ 17 d1hh1a_ 18 c1fokA_ 19 c2j89A_ 20 c2hihB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1cw0a_ 100.0 100 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 2 d1vsra_ 100.0 100 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 3 c3hrlA_ 99.9 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:endonuclease-like protein; PDBTitle: crystal structure of a putative endonuclease-like protein (ngo0050)2 from neisseria gonorrhoeae 4 c3fovA_ 84.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris 5 c2fqzC_ 82.7 26 PDB header:hydrolase/dna Chain: C: PDB Molecule:r.ecl18ki; PDBTitle: metal-depleted ecl18ki in complex with uncleaved dna 6 d1m0da_ 81.9 22 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 7 d1na6a2 60.3 26 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Type II restriction endonuclease catalytic domain 8 d1y88a2 55.5 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:MRR-like 9 c3hxkB_ 54.1 24 PDB header:hydrolase Chain: B: PDB Molecule:sugar hydrolase; PDBTitle: crystal structure of a sugar hydrolase (yeeb) from2 lactococcus lactis, northeast structural genomics3 consortium target kr108 10 d1uxoa_ 52.8 21 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:YdeN-like 11 d1gefa_ 47.5 21 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 12 c3o3nA_ 45.3 17 PDB header:lyase Chain: A: PDB Molecule:alpha-subunit 2-hydroxyisocaproyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 13 c3bm3A_ 33.8 17 PDB header:hydrolase/dna Chain: A: PDB Molecule:pspgi restriction endonuclease; PDBTitle: restriction endonuclease pspgi-substrate dna complex 14 c2o2gA_ 33.0 28 PDB header:hydrolase Chain: A: PDB Molecule:dienelactone hydrolase; PDBTitle: crystal structure of dienelactone hydrolase (yp_324580.1) from2 anabaena variabilis atcc 29413 at 1.92 a resolution 15 d1ff3c_ 32.5 31 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 16 c1y88A_ 30.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1548; PDBTitle: crystal structure of protein of unknown function af1548 17 d1hh1a_ 29.7 28 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 18 c1fokA_ 29.4 11 PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (foki restriction endonucleas); PDBTitle: structure of restriction endonuclease foki bound to dna 19 c2j89A_ 29.2 32 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine sulfoxide reductase a; PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases 20 c2hihB_ 29.0 21 PDB header:hydrolase Chain: B: PDB Molecule:lipase 46 kda form; PDBTitle: crystal structure of staphylococcus hyicus lipase 21 c3pilA_ not modelled 27.5 29 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form 22 c2wj0B_ not modelled 27.0 25 PDB header:hydrolase/dna Chain: B: PDB Molecule:archaeal hjc; PDBTitle: crystal structures of holliday junction resolvases from2 archaeoglobus fulgidus bound to dna substrate 23 d1fvga_ not modelled 26.2 36 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 24 c3mn1B_ not modelled 24.4 24 PDB header:hydrolase Chain: B: PDB Molecule:probable yrbi family phosphatase; PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a 25 c1na6B_ not modelled 24.1 30 PDB header:hydrolase Chain: B: PDB Molecule:restriction endonuclease ecorii; PDBTitle: crystal structure of restriction endonuclease ecorii mutant2 r88a 26 c2qruA_ not modelled 22.4 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an alpha/beta hydrolase superfamily protein from2 enterococcus faecalis 27 d2je8a5 not modelled 22.3 25 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 28 d2qlva1 not modelled 22.2 12 Fold:TBP-like Superfamily:KA1-like Family:Ssp2 C-terminal domain-like 29 c3bqhA_ not modelled 21.2 42 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) 30 d1ji3a_ not modelled 20.9 22 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 31 d2v8qa1 not modelled 19.1 7 Fold:TBP-like Superfamily:KA1-like Family:Ssp2 C-terminal domain-like 32 c1fvaA_ not modelled 18.3 36 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of bovine methionine sulfoxide reductase 33 d1ob8a_ not modelled 18.1 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 34 c2qjwA_ not modelled 17.9 18 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein xcc1541; PDBTitle: crystal structure of a putative hydrolase of the alpha/beta2 superfamily (xcc1541) from xanthomonas campestris pv. campestris at3 1.35 a resolution 35 c3ahhA_ not modelled 17.9 13 PDB header:lyase Chain: A: PDB Molecule:xylulose 5-phosphate/fructose 6-phosphate phosphoketolase; PDBTitle: h142a mutant of phosphoketolase from bifidobacterium breve complexed2 with acetyl thiamine diphosphate 36 d1ff3a_ not modelled 17.6 31 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 37 d1jg5a_ not modelled 17.5 40 Fold:GTP cyclohydrolase I feedback regulatory protein, GFRP Superfamily:GTP cyclohydrolase I feedback regulatory protein, GFRP Family:GTP cyclohydrolase I feedback regulatory protein, GFRP 38 c1nwaA_ not modelled 16.9 33 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra; PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine 39 d1nwaa_ not modelled 16.9 33 Fold:Ferredoxin-like Superfamily:Peptide methionine sulfoxide reductase Family:Peptide methionine sulfoxide reductase 40 d2pbla1 not modelled 16.6 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase 41 d2qrda1 not modelled 16.3 19 Fold:TBP-like Superfamily:KA1-like Family:Ssp2 C-terminal domain-like 42 c3gzjB_ not modelled 15.0 24 PDB header:hydrolase Chain: B: PDB Molecule:polyneuridine-aldehyde esterase; PDBTitle: crystal structure of polyneuridine aldehyde esterase2 complexed with 16-epi-vellosimine 43 c3hl4B_ not modelled 14.7 23 PDB header:transferase Chain: B: PDB Molecule:choline-phosphate cytidylyltransferase a; PDBTitle: crystal structure of a mammalian ctp:phosphocholine2 cytidylyltransferase with cdp-choline 44 c3llcA_ not modelled 14.6 18 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative hydrolase (yp_002548124.1) from2 agrobacterium vitis s4 at 1.80 a resolution 45 c3dqzB_ not modelled 14.4 23 PDB header:lyase Chain: B: PDB Molecule:alpha-hydroxynitrile lyase-like protein; PDBTitle: structure of the hydroxynitrile lyase from arabidopsis2 thaliana 46 d1rila_ not modelled 14.3 33 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 47 c2p14A_ not modelled 14.1 19 PDB header:hydrolase Chain: A: PDB Molecule:heterodimeric restriction endonuclease r.bspd6i small PDBTitle: crystal structure of small subunit (r.bspd6i2) of the heterodimeric2 restriction endonuclease r.bspd6i 48 c2wtmC_ not modelled 13.3 27 PDB header:hydrolase Chain: C: PDB Molecule:est1e; PDBTitle: est1e from butyrivibrio proteoclasticus 49 c3ic8D_ not modelled 13.2 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized gst-like proteinprotein; PDBTitle: the crystal structure of a gst-like protein from pseudomonas syringae2 to 2.4a 50 c3bjrA_ not modelled 12.9 11 PDB header:hydrolase Chain: A: PDB Molecule:putative carboxylesterase; PDBTitle: crystal structure of a putative carboxylesterase (lp_1002) from2 lactobacillus plantarum wcfs1 at 2.09 a resolution 51 d1xkla_ not modelled 12.7 21 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hydroxynitrile lyase-like 52 c2qipA_ not modelled 12.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function vpa0982; PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633 53 c3ksrA_ not modelled 12.4 23 PDB header:hydrolase Chain: A: PDB Molecule:putative serine hydrolase; PDBTitle: crystal structure of a putative serine hydrolase (xcc3885) from2 xanthomonas campestris pv. campestris at 2.69 a resolution 54 c2je8B_ not modelled 11.3 23 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 55 d1r0va1 not modelled 11.1 13 Fold:Restriction endonuclease-like Superfamily:tRNA-intron endonuclease catalytic domain-like Family:tRNA-intron endonuclease catalytic domain-like 56 d1h70a_ not modelled 10.5 19 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Dimethylarginine dimethylaminohydrolase DDAH 57 c3elbA_ not modelled 10.3 17 PDB header:transferase Chain: A: PDB Molecule:ethanolamine-phosphate cytidylyltransferase; PDBTitle: human ctp: phosphoethanolamine cytidylyltransferase in complex with2 cmp 58 c2i3dA_ not modelled 10.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu1826; PDBTitle: crystal structure of protein of unknown function atu1826, a putative2 alpha/beta hydrolase from agrobacterium tumefaciens 59 d2i3da1 not modelled 10.3 15 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Atu1826-like 60 c3n07B_ not modelled 10.2 21 PDB header:hydrolase Chain: B: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: structure of putative 3-deoxy-d-manno-octulosonate 8-phosphate2 phosphatase from vibrio cholerae 61 d1z9ha2 not modelled 10.1 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 62 d2fuka1 not modelled 10.0 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Atu1826-like 63 d1vjza_ not modelled 9.6 8 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 64 d2d5ua1 not modelled 9.5 14 Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain 65 d1dina_ not modelled 9.5 17 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Dienelactone hydrolase 66 d1v2aa2 not modelled 9.5 7 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 67 d1jl2a_ not modelled 9.3 36 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 68 d1gpla2 not modelled 9.3 10 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain 69 d1jl1a_ not modelled 8.9 36 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 70 d1ufoa_ not modelled 8.8 22 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hypothetical protein TT1662 71 c2omkB_ not modelled 8.7 15 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: structure of the bacteroides thetaiotaomicron thiamin2 pyrophosphokinase 72 c2hb5A_ not modelled 8.7 13 PDB header:hydrolase Chain: A: PDB Molecule:reverse transcriptase/ribonuclease h; PDBTitle: crystal structure of the moloney murine leukemia virus2 rnase h domain 73 d2vzsa5 not modelled 8.3 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 74 c2jw1A_ not modelled 8.0 50 PDB header:membrane protein Chain: A: PDB Molecule:lipoprotein mxim; PDBTitle: structural characterization of the type iii pilotin-2 secretin interaction in shigella flexneri by nmr3 spectroscopy 75 c2qkkI_ not modelled 7.9 44 PDB header:hydrolase/dna/rna Chain: I: PDB Molecule:ribonuclease h1; PDBTitle: human rnase h catalytic domain mutant d210n in complex with2 14-mer rna/dna hybrid 76 d1zs8a2 not modelled 7.7 12 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 77 d1vmea1 not modelled 7.5 18 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 78 d2gvia1 not modelled 7.5 38 Fold:FwdE/GAPDH domain-like Superfamily:FwdE-like Family:FwdE-like 79 d1r7ha_ not modelled 7.5 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 80 d1vkha_ not modelled 7.4 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Putative serine hydrolase Ydr428c 81 c2rpiA_ not modelled 7.3 33 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h; PDBTitle: the nmr structure of the submillisecond folding2 intermediate of the thermus thermophilus ribonuclease h 82 c1qgeD_ not modelled 7.1 46 PDB header:hydrolase Chain: D: PDB Molecule:protein (triacylglycerol hydrolase); PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase 83 d1qzua_ not modelled 6.9 25 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 84 c3e0mB_ not modelled 6.9 33 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb PDBTitle: crystal structure of fusion protein of msra and msrb 85 c1fuiB_ not modelled 6.8 12 PDB header:isomerase Chain: B: PDB Molecule:l-fucose isomerase; PDBTitle: l-fucose isomerase from escherichia coli 86 d2glza1 not modelled 6.6 38 Fold:FwdE/GAPDH domain-like Superfamily:FwdE-like Family:FwdE-like 87 d1g5qa_ not modelled 6.1 18 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 88 c2ykqC_ not modelled 6.0 19 PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer 89 c2gviA_ not modelled 5.9 38 PDB header:oxidoreductase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution 90 c3hstD_ not modelled 5.8 30 PDB header:hydrolase Chain: D: PDB Molecule:protein rv2228c/mt2287; PDBTitle: n-terminal rnase h domain of rv2228c from mycobacterium tuberculosis2 as a fusion protein with maltose binding protein 91 d1pn9a2 not modelled 5.8 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 92 c3ihkC_ not modelled 5.8 22 PDB header:transferase Chain: C: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from2 s.mutans, northeast structural genomics consortium target3 smr83 93 d1whza_ not modelled 5.7 19 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:YcfA-like 94 d1e89a_ not modelled 5.7 21 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hydroxynitrile lyase-like 95 c3rqrA_ not modelled 5.6 22 PDB header:metal transport Chain: A: PDB Molecule:ryanodine receptor 1; PDBTitle: crystal structure of the ryr domain of the rabbit ryanodine receptor 96 c3uoaB_ not modelled 5.5 15 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation PDBTitle: crystal structure of the malt1 paracaspase (p21 form) 97 d2c2la2 not modelled 5.4 18 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 98 c1pq1B_ not modelled 5.3 38 PDB header:apoptosis Chain: B: PDB Molecule:bcl2-like protein 11; PDBTitle: crystal structure of bcl-xl/bim 99 d1cuka1 not modelled 5.3 19 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0