Email l.a.kelley@imperial.ac.uk Description P0A7W1 Date Thu Jan 5 11:06:20 GMT 2012 Unique Job ID e8a63f2fa9bd3c95

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3bbnE_ 100.0 47 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 2 c1p6gE_ 100.0 100 PDB header:ribosome Chain: E: PDB Molecule:30s ribosomal protein s5; PDBTitle: real space refined coordinates of the 30s subunit fitted2 into the low resolution cryo-em map of the ef-g.gtp state3 of e. coli 70s ribosome 3 c2ow8f_ 100.0 47 PDB header:ribosome Chain: F: PDB Molecule: PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa. 4 c2xzmE_ 100.0 29 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 5 c1eg0B_ 100.0 54 PDB header:ribosome PDB COMPND: 6 c2zkqe_ 100.0 29 PDB header:ribosomal protein/rna Chain: E: PDB Molecule:rna expansion segment es6 part ii; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 7 c1s1hE_ 100.0 31 PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein s2; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 8 c3izbE_ 100.0 30 PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein rps2 (s5p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 9 c3iz6E_ 100.0 33 PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein s2 (s5p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 10 d2qale1 100.0 100 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 11 d2uube1 100.0 41 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 12 d1pkpa1 99.9 51 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 13 d2uube2 99.9 55 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 14 d1pkpa2 99.9 59 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 15 d2qale2 99.9 100 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 16 d1p42a1 58.3 47 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC 17 c2go4A_ 54.3 47 PDB header:hydrolase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: crystal structure of aquifex aeolicus lpxc complexed with tu-514 18 c3nzkB_ 51.9 40 PDB header:hydrolase Chain: B: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: structure of lpxc from yersinia enterocolitica complexed with chir0902 inhibitor 19 c2vesA_ 50.3 33 PDB header:hydrolase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine PDBTitle: crystal structure of lpxc from pseudomonas aeruginosa2 complexed with the potent bb-78485 inhibitor 20 d2b7ta1 49.0 22 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 21 d2nuga2 not modelled 46.6 15 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 22 d2pifa1 not modelled 46.5 22 Fold:PSTPO5379-like Superfamily:PSTPO5379-like Family:PSTPO5379-like 23 c3adjA_ not modelled 43.1 21 PDB header:gene regulation Chain: A: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing 24 d1x47a1 not modelled 42.1 24 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 25 d2vapa2 not modelled 41.7 20 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 26 d1stua_ not modelled 40.5 18 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 27 d1qu6a2 not modelled 40.1 19 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 28 d1w5fa2 not modelled 39.2 36 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 29 d2b7va1 not modelled 38.1 28 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 30 c2ljhA_ not modelled 37.8 21 PDB header:hydrolase Chain: A: PDB Molecule:double-stranded rna-specific editase adar; PDBTitle: nmr structure of double-stranded rna-specific editase adar 31 d1rq2a2 not modelled 37.4 24 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 32 d1ofua2 not modelled 34.2 20 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 33 d1o0wa2 not modelled 33.9 25 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 34 c3adiC_ not modelled 30.5 25 PDB header:gene regulation/rna Chain: C: PDB Molecule:f21m12.9 protein; PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing 35 c2zqeA_ not modelled 25.8 33 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 36 d1bf4a_ not modelled 24.2 26 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 37 d1x48a1 not modelled 23.4 24 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 38 d2dixa1 not modelled 22.4 20 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 39 d1tzza2 not modelled 21.5 26 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 40 c1t4oA_ not modelled 21.4 30 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnt1p dsrbd 41 d1t4oa_ not modelled 21.4 30 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 42 c3c4tA_ not modelled 20.6 23 PDB header:hydrolase Chain: A: PDB Molecule:endoribonuclease dicer; PDBTitle: structure of rnaseiiib and dsrna binding domains of mouse dicer 43 d1sr9a3 not modelled 20.3 15 Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 44 c2l3jA_ not modelled 17.9 27 PDB header:hydrolase/rna Chain: A: PDB Molecule:double-stranded rna-specific editase 1; PDBTitle: the solution structure of the adar2 dsrbm-rna complex reveals a2 sequence-specific read out of the minor groove 45 d1r4ca_ not modelled 17.3 11 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins 46 c2ch9A_ not modelled 16.7 8 PDB header:inhibitor Chain: A: PDB Molecule:cystatin f; PDBTitle: crystal structure of dimeric human cystatin f 47 d2dmya1 not modelled 15.8 17 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 48 d1bqga2 not modelled 14.9 20 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 49 c2fkpC_ not modelled 14.6 13 PDB header:isomerase Chain: C: PDB Molecule:n-acylamino acid racemase; PDBTitle: the mutant g127c-t313c of deinococcus radiodurans n-2 acylamino acid racemase 50 d1uila_ not modelled 14.5 16 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 51 d1wi9a_ not modelled 14.4 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 52 c1yywB_ not modelled 14.2 19 PDB header:hydrolase/rna Chain: B: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnase iii from aquifex aeolicus2 complexed with double stranded rna at 2.8-angstrom3 resolution 53 c3kk4B_ not modelled 14.1 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bp1543; PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i 54 c3adlA_ not modelled 14.0 19 PDB header:gene regulation/rna Chain: A: PDB Molecule:risc-loading complex subunit tarbp2; PDBTitle: structure of trbp2 and its molecule implications for mirna processing 55 d1r0ma2 not modelled 13.7 12 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 56 d1jpdx2 not modelled 13.6 9 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 57 d1jdfa2 not modelled 13.2 15 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 58 d1cewi_ not modelled 13.2 5 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins 59 d1nu5a2 not modelled 12.9 15 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 60 c3llhB_ not modelled 12.8 31 PDB header:rna binding protein Chain: B: PDB Molecule:risc-loading complex subunit tarbp2; PDBTitle: crystal structure of the first dsrbd of tar rna-binding protein 2 61 d1kn0a_ not modelled 12.7 20 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase 62 c1znnF_ not modelled 12.2 19 PDB header:biosynthetic protein Chain: F: PDB Molecule:plp synthase; PDBTitle: structure of the synthase subunit of plp synthase 63 d1znna1 not modelled 12.2 19 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:PdxS-like 64 d1t4lb_ not modelled 12.2 33 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 65 d1di2a_ not modelled 11.8 23 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 66 c1w5fA_ not modelled 11.8 36 PDB header:cell division Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz, t7 mutated, domain swapped (t. maritima) 67 d1uhza_ not modelled 10.7 17 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 68 c1h2iG_ not modelled 9.9 20 PDB header:dna-binding protein Chain: G: PDB Molecule:dna repair protein rad52 homolog; PDBTitle: human rad52 protein, n-terminal domain 69 d2cpna1 not modelled 9.8 20 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 70 d2mnra2 not modelled 9.6 21 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 71 d1iowa1 not modelled 9.6 21 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 72 c1w59B_ not modelled 9.4 20 PDB header:cell division Chain: B: PDB Molecule:cell division protein ftsz homolog 1; PDBTitle: ftsz dimer, empty (m. jannaschii) 73 d1x49a1 not modelled 9.4 22 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 74 c2khxA_ not modelled 9.4 26 PDB header:gene regulation,nuclear protein Chain: A: PDB Molecule:ribonuclease 3; PDBTitle: drosha double-stranded rna binding motif 75 d1t4na_ not modelled 9.3 37 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 76 c3mwzA_ not modelled 9.1 11 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:sialostatin l2; PDBTitle: crystal structure of the selenomethionine derivative of the l 22,47,2 100 m mutant of sialostatin l2 77 d2ux9a1 not modelled 9.0 26 Fold:Dodecin subunit-like Superfamily:Dodecin-like Family:Dodecin-like 78 c3onrI_ not modelled 9.0 15 PDB header:metal binding protein Chain: I: PDB Molecule:protein transport protein sece2; PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site 79 c2l2nA_ not modelled 9.0 19 PDB header:rna binding protein, plant protein Chain: A: PDB Molecule:hyponastic leave 1; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for the first2 dsrbd of protein hyl1 80 c3oqtP_ not modelled 8.9 26 PDB header:flavoprotein Chain: P: PDB Molecule:rv1498a protein; PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis 81 c3dfhC_ not modelled 8.7 20 PDB header:isomerase Chain: C: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3 82 c2l33A_ not modelled 8.7 19 PDB header:transcription regulator Chain: A: PDB Molecule:interleukin enhancer-binding factor 3; PDBTitle: solution nmr structure of drbm 2 domain of interleukin enhancer-2 binding factor 3 from homo sapiens, northeast structural genomics3 consortium target hr4527e 83 c2rhoB_ not modelled 8.5 22 PDB header:cell cycle Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: synthetic gene encoded bacillus subtilis ftsz ncs dimer with2 bound gdp and gtp-gamma-s 84 c3l0rA_ not modelled 8.5 17 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:cystatin-2; PDBTitle: crystal structure of salivary cystatin from the soft tick ornithodoros2 moubata 85 c1vz0B_ not modelled 8.1 25 PDB header:nuclear protein Chain: B: PDB Molecule:chromosome partitioning protein parb; PDBTitle: chromosome segregation protein spo0j from thermus2 thermophilus 86 d2bv3a3 not modelled 7.9 23 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 87 d1azpa_ not modelled 7.8 28 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:"Histone-like" proteins from archaea 88 d1vz0a1 not modelled 7.7 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like 89 c2vxyA_ not modelled 7.6 24 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: the structure of ftsz from bacillus subtilis at 1.7a2 resolution 90 c2vxaL_ not modelled 7.5 12 PDB header:flavoprotein Chain: L: PDB Molecule:dodecin; PDBTitle: h.halophila dodecin in complex with riboflavin 91 c3n4fD_ not modelled 7.3 18 PDB header:isomerase Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from geobacillus sp. y412mc10 92 c2vawA_ not modelled 7.3 20 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz pseudomonas aeruginosa gdp 93 c1l0oC_ not modelled 7.3 13 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 94 d1l0oc_ not modelled 7.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 95 d1roaa_ not modelled 7.1 15 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins 96 d1ekza_ not modelled 7.0 21 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 97 d1yeya2 not modelled 6.8 12 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 98 c2ppgB_ not modelled 6.7 21 PDB header:isomerase Chain: B: PDB Molecule:putative isomerase; PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti 99 c2p88E_ not modelled 6.7 15 PDB header:lyase Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme PDBTitle: crystal structure of n-succinyl arg/lys racemase from2 bacillus cereus atcc 14579