Email l.a.kelley@imperial.ac.uk Description P0A6S3 Date Thu Jan 5 11:03:47 GMT 2012 Unique Job ID da7d69979570da22

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3idwA_ 52.4 20 PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 2 c2a74B_ 51.9 9 PDB header:immune system Chain: B: PDB Molecule:complement component c3c; PDBTitle: human complement component c3c 3 c3hs0B_ 45.5 5 PDB header:immune system Chain: B: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b 4 d2fhzb1 26.8 64 Fold:Colicin D/E5 nuclease domain Superfamily:Colicin D/E5 nuclease domain Family:Colicin E5 nuclease domain 5 d1h80a_ 24.7 33 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:iota-carrageenase 6 c2gm2A_ 22.9 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 7 d3es6b1 22.8 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:SVA-like 8 d2fvta1 22.3 25 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 9 c3g6jB_ 21.1 9 PDB header:immune system Chain: B: PDB Molecule:complement c3 alpha chain; PDBTitle: c3b in complex with a c3b specific fab 10 c2of5A_ 19.9 21 PDB header:apoptosis Chain: A: PDB Molecule:death domain-containing protein cradd; PDBTitle: oligomeric death domain complex 11 c2i1vB_ 19.9 24 PDB header:transferase, hydrolase Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate 12 d2ckaa1 19.6 21 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 13 c2ckaA_ 19.6 21 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 14 d1ueba3 19.2 36 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 15 c1h2iG_ 18.8 26 PDB header:dna-binding protein Chain: G: PDB Molecule:dna repair protein rad52 homolog; PDBTitle: human rad52 protein, n-terminal domain 16 d2nn6i1 17.7 35 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 17 c3f59A_ 17.1 13 PDB header:structural protein Chain: A: PDB Molecule:ankyrin-1; PDBTitle: crystal structure of zu5-ank, the spectrin binding region of human2 erythroid ankyrin 18 c1yfzA_ 16.9 14 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: novel imp binding in feedback inhibition of hypoxanthine-guanine2 phosphoribosyltransferase from thermoanaerobacter tengcongensis 19 d1yfza1 16.9 14 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 20 d2i8ga1 16.8 36 Fold:Mog1p/PsbP-like Superfamily:Mog1p/PsbP-like Family:DIP2269-like 21 d2dy1a4 not modelled 15.2 16 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 22 c2a73B_ not modelled 14.8 9 PDB header:immune system Chain: B: PDB Molecule:complement c3; PDBTitle: human complement component c3 23 c2j37W_ not modelled 14.5 39 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 24 d1kn0a_ not modelled 14.5 23 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase 25 d2bm0a4 not modelled 13.8 16 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 26 c1wm9D_ not modelled 13.7 23 PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8 27 c3e4fB_ not modelled 13.5 41 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 28 d1m1ha1 not modelled 13.3 42 Fold:N-utilization substance G protein NusG, insert domain Superfamily:N-utilization substance G protein NusG, insert domain Family:N-utilization substance G protein NusG, insert domain 29 c2o8kA_ not modelled 13.2 27 PDB header:transcription/dna Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element 30 d1wura1 not modelled 13.1 23 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 31 c2j9wB_ not modelled 12.8 24 PDB header:protein transport Chain: B: PDB Molecule:vps28-prov protein; PDBTitle: structural insight into the escrt-i-ii link and its role in2 mvb trafficking 32 d2ckca1 not modelled 12.8 29 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 33 c2ckcA_ not modelled 12.8 29 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 34 c1dpuA_ not modelled 12.7 6 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 35 d1dpua_ not modelled 12.7 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 36 d1ge9a_ not modelled 12.5 18 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 37 d1sv6a_ not modelled 12.5 23 Fold:FAH Superfamily:FAH Family:FAH 38 c3gmgB_ not modelled 12.0 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis 39 c1bifA_ not modelled 11.9 24 PDB header:bifunctional enzyme Chain: A: PDB Molecule:6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase; PDBTitle: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase bifunctional2 enzyme complexed with atp-g-s and phosphate 40 d1iv0a_ not modelled 11.6 30 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 41 c2wl8D_ not modelled 11.2 26 PDB header:protein transport Chain: D: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: x-ray crystal structure of pex19p 42 d2v0ea1 not modelled 11.2 29 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 43 c3fsyC_ not modelled 11.1 19 PDB header:transferase Chain: C: PDB Molecule:tetrahydrodipicolinate n-succinyltransferase; PDBTitle: structure of tetrahydrodipicolinate n-succinyltransferase2 (rv1201c;dapd) in complex with succinyl-coa from mycobacterium3 tuberculosis 44 c3r6oA_ not modelled 11.1 15 PDB header:isomerase Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; PDBTitle: crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7-2 dioateisomerase from mycobacterium abscessus 45 c3ouvA_ not modelled 10.9 24 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase; PDBTitle: semet derivative of l512m mutant of pasta domain 3 of mycobacterium2 tuberculosis pknb 46 c2zf9D_ not modelled 10.6 31 PDB header:structural protein Chain: D: PDB Molecule:scae cell-surface anchored scaffoldin protein; PDBTitle: crystal structure of a type iii cohesin module from the cellulosomal2 scae cell-surface anchoring scaffoldin of ruminococcus flavefaciens 47 c2lf3A_ not modelled 10.5 36 PDB header:signaling protein Chain: A: PDB Molecule:effector protein hopab3; PDBTitle: solution nmr structure of hoppmal_281_385 from pseudomonas syringae2 pv. maculicola str. es4326, midwest center for structural genomics3 target apc40104.5 and northeast structural genomics consortium target4 pst2a 48 c3i7tA_ not modelled 10.4 31 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of rv2704, a member of highly conserved2 yjgf/yer057c/uk114 family, from mycobacterium tuberculosis 49 c2jvfA_ not modelled 10.4 22 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 50 d1k6ma1 not modelled 10.3 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain 51 d2q4qa1 not modelled 10.2 25 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 52 d1udxa3 not modelled 10.1 17 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 53 d2k8ea1 not modelled 10.0 22 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 54 c1i7oC_ not modelled 9.8 12 PDB header:isomerase, lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate degradation bifunctional PDBTitle: crystal structure of hpce 55 c3gtzA_ not modelled 9.8 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative translation initiation inhibitor; PDBTitle: crystal structure of a putative translation initiation inhibitor from2 salmonella typhimurium 56 c1d2fB_ not modelled 9.7 25 PDB header:transferase Chain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression 57 c2v3cC_ not modelled 9.6 39 PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii 58 c2ig8C_ not modelled 9.6 18 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein pa3499; PDBTitle: crystal structure of a protein of unknown function pa3499 from2 pseudomonas aeruginosa 59 c3pisA_ not modelled 9.6 40 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kazal-type serine protease inhibitor spi-1; PDBTitle: crystal structure of carcinoscorpius rotundicauda serine protease2 inhibitor domain 1 60 c2b39B_ not modelled 9.5 9 PDB header:immune system Chain: B: PDB Molecule:c3; PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution 61 d2dl6a1 not modelled 9.4 29 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 62 c2hfuB_ not modelled 9.3 30 PDB header:transferase Chain: B: PDB Molecule:mevalonate kinase, putative; PDBTitle: crystal structure of l. major mevalonate kinase in complex2 with r-mevalonate 63 c3ez4B_ not modelled 9.2 21 PDB header:transferase Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase; PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei 64 c2eb5D_ not modelled 9.2 31 PDB header:lyase Chain: D: PDB Molecule:2-oxo-hept-3-ene-1,7-dioate hydratase; PDBTitle: crystal structure of hpcg complexed with oxalate 65 c3gdwA_ not modelled 9.1 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma-54 interaction domain protein; PDBTitle: crystal structure of sigma-54 interaction domain protein from2 enterococcus faecalis 66 c1vpzB_ not modelled 9.1 19 PDB header:rna binding protein Chain: B: PDB Molecule:carbon storage regulator homolog; PDBTitle: crystal structure of a putative carbon storage regulator protein2 (csra, pa0905) from pseudomonas aeruginosa at 2.05 a resolution 67 c2kmmA_ not modelled 9.1 10 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 68 d1t3da_ not modelled 9.0 12 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 69 d1vk2a_ not modelled 8.9 34 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like 70 d2od5a1 not modelled 8.9 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Marine metagenome family WH1 71 c2od5A_ not modelled 8.9 27 PDB header:dna binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative nucleic acid binding protein2 (jcvi_pep_1096688149193) from uncultured marine organism at 1.79 a3 resolution 72 d1r17a1 not modelled 8.8 16 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Fibrinogen-binding domain 73 c2jppB_ not modelled 8.8 16 PDB header:translation/rna Chain: B: PDB Molecule:translational repressor; PDBTitle: structural basis of rsma/csra rna recognition: structure of2 rsme bound to the shine-dalgarno sequence of hcna mrna 74 d1cuka1 not modelled 8.7 38 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 75 c3l7qD_ not modelled 8.6 16 PDB header:translation Chain: D: PDB Molecule:putative translation initiation inhibitor, aldr regulator- PDBTitle: crystal structure of aldr from streptococcus mutans 76 c2x7iA_ not modelled 8.6 20 PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: crystal structure of mevalonate kinase from methicillin-2 resistant staphylococcus aureus mrsa252 77 c2iy3A_ not modelled 8.6 39 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 78 c2f1rA_ not modelled 8.4 32 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb) 79 d1ssqa_ not modelled 8.4 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 80 d1x6va3 not modelled 8.3 38 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase) 81 c3dm5A_ not modelled 8.3 43 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 82 c1t3oA_ not modelled 8.2 6 PDB header:rna binding protein Chain: A: PDB Molecule:carbon storage regulator; PDBTitle: solution structure of csra, a bacterial carbon storage2 regulatory protein 83 d1stza1 not modelled 8.1 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain 84 d1a8ra_ not modelled 8.0 21 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 85 c2bpsA_ not modelled 8.0 16 PDB header:ubiquitin Chain: A: PDB Molecule:yukd protein; PDBTitle: ubiquitin-like protein yukd of bacillus subtilis 86 d1vpza_ not modelled 7.9 19 Fold:CsrA-like Superfamily:CsrA-like Family:CsrA-like 87 c3cu7A_ not modelled 7.9 18 PDB header:immune system Chain: A: PDB Molecule:complement c5; PDBTitle: human complement component 5 88 c2kxsA_ not modelled 7.8 22 PDB header:protein binding Chain: A: PDB Molecule:tight junction protein zo-1, linker, peptide of myocardium- PDBTitle: zo1 zu5 domain in complex with grinl1a peptide 89 c2xdyA_ not modelled 7.8 15 PDB header:rna binding protein Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2; PDBTitle: crystal structure of the n. crassa qde-2 ago mid domain 90 d1y76b1 not modelled 7.6 25 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 91 c2ea3A_ not modelled 7.6 26 PDB header:hydrolase Chain: A: PDB Molecule:chymotrypsin; PDBTitle: crystal structure of cellulomonas bogoriensis chymotrypsin 92 c1qzwC_ not modelled 7.4 39 PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication 93 c3k0tA_ not modelled 7.3 11 PDB header:sugar binding protein Chain: A: PDB Molecule:endoribonuclease l-psp, putative; PDBTitle: crystal structure of pspto -psp protein in complex with d-beta-glucose2 from pseudomonas syringae pv. tomato str. dc3000 94 c3gr1A_ not modelled 7.3 46 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 95 c3a3eB_ not modelled 7.3 18 PDB header:hydrolase Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv) 96 d2k8ea2 not modelled 7.3 23 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 97 c3oyyA_ not modelled 7.2 18 PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of pseudomonas aeruginosa elongation factor p 98 c1gqqA_ not modelled 7.1 21 PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae 99 c1dlyA_ not modelled 7.0 25 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin; PDBTitle: x-ray crystal structure of hemoglobin from the green2 unicellular alga chlamydomonas eugametos