Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	E	A	V	S	P	G	A	L	S	T	L	F	T	D	A	R	T	H	N	G	W	R	E	T	P	V	S	D	E	T	L	R	E	I	Y	A	L	M	K	W	G	P	T	S	A	N	C	S	P	A	R	I	V	F	T	R	T	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	G	K	E	R	L	R	P	A	L	S	S	G	N	L	Q	K	T	L	T	A	P	V	T	A	I	V	A	W	D	S	E	F	Y	E	R	L	P	L	L	F	P	H	G	D	A	R	S	W	F	T	S	S	P	Q	L	A	E	E	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	F	R	N	S	S	M	Q	A	A	Y	L	I	V	A	C	R	A	L	G	L	D	T	G	P	M	S	G	F	D	R	Q	H	V	D	D	A	F	F	T	G	S	T	L	K	S	N	L	L	I	N	I	G	Y	G	D	S	S	K	L
Secondary structure
SS confidence
Disorder																																																											?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Sequence		Y	A	R	L	P	R	L	S	F	E	E	A	C	G	L	L
Secondary structure
SS confidence
Disorder		?	?	?													?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vfr chain A Region: 9 - 196 Aligned: 188 Modelled: 188 Confidence: 100.0% Identity: 16% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3of4 chain A Region: 10 - 196 Aligned: 185 Modelled: 185 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution Phyre2 PDB 3bem chain A Region: 6 - 196 Aligned: 189 Modelled: 188 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution Phyre2 PDB 2hay chain D Region: 7 - 196 Aligned: 188 Modelled: 189 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase; PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas Phyre2 PDB 1zch chain A domain 1 Region: 8 - 194 Aligned: 180 Modelled: 185 Confidence: 100.0% Identity: 18% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3n2s chain D Region: 9 - 194 Aligned: 179 Modelled: 186 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis Phyre2 PDB 3eof chain B Region: 12 - 194 Aligned: 174 Modelled: 183 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution Phyre2 PDB 1f5v chain A Region: 8 - 194 Aligned: 174 Modelled: 187 Confidence: 100.0% Identity: 16% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1bkj chain A Region: 8 - 194 Aligned: 174 Modelled: 187 Confidence: 100.0% Identity: 16% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 3gag chain B Region: 6 - 196 Aligned: 187 Modelled: 189 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase; PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution Phyre2 PDB 3gbh chain C Region: 1 - 196 Aligned: 190 Modelled: 196 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution Phyre2 PDB 1yki chain A domain 1 Region: 9 - 196 Aligned: 188 Modelled: 188 Confidence: 100.0% Identity: 20% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 2wzv chain B Region: 8 - 196 Aligned: 188 Modelled: 181 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:nfnb protein; PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis Phyre2 PDB 3gh8 chain A Region: 7 - 196 Aligned: 190 Modelled: 190 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:iodotyrosine dehalogenase 1; PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit) Phyre2 PDB 3gr3 chain B Region: 6 - 196 Aligned: 191 Modelled: 191 Confidence: 100.0% Identity: 16% PDB header:flavoprotein Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution Phyre2 PDB 3ge6 chain B Region: 3 - 195 Aligned: 190 Modelled: 193 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution Phyre2 PDB 2isl chain B Region: 7 - 194 Aligned: 175 Modelled: 175 Confidence: 100.0% Identity: 19% PDB header:flavoprotein Chain: B: PDB Molecule:blub; PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form) Phyre2 PDB 2b67 chain A domain 1 Region: 9 - 195 Aligned: 183 Modelled: 185 Confidence: 100.0% Identity: 20% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 2fre chain A domain 1 Region: 2 - 193 Aligned: 177 Modelled: 177 Confidence: 100.0% Identity: 19% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 PDB 1kqb chain A Region: 9 - 194 Aligned: 186 Modelled: 186 Confidence: 100.0% Identity: 18% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: NADH oxidase/flavin reductase Phyre2 1 d1vfra_ 2 c3of4A_ 3 c3bemA_ 4 c2hayD_ 5 d1zcha1 6 c3n2sD_ 7 c3eofB_ 8 d1f5va_ 9 d1bkja_ 10 c3gagB_ 11 c3gbhC_ 12 d1ykia1 13 c2wzvB_ 14 c3gh8A_ 15 c3gr3B_ 16 c3ge6B_ 17 c2islB_ 18 d2b67a1 19 d2frea1 20 d1kqba_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vfra_ 100.0 16 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 2 c3of4A_ 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution 3 c3bemA_ 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn; PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution 4 c2hayD_ 100.0 19 PDB header:oxidoreductase Chain: D: PDB Molecule:putative nad(p)h-flavin oxidoreductase; PDBTitle: the crystal structure of the putative nad(p)h-flavin oxidoreductase2 from streptococcus pyogenes m1 gas 5 d1zcha1 100.0 18 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 6 c3n2sD_ 100.0 13 PDB header:oxidoreductase Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase; PDBTitle: structure of nfra1 nitroreductase from b. subtilis 7 c3eofB_ 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution 8 d1f5va_ 100.0 16 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 9 d1bkja_ 100.0 16 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 10 c3gagB_ 100.0 13 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh dehydrogenase, nadph nitroreductase; PDBTitle: crystal structure of a nitroreductase-like protein (smu.346) from2 streptococcus mutans at 1.70 a resolution 11 c3gbhC_ 100.0 21 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution 12 d1ykia1 100.0 20 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 13 c2wzvB_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:nfnb protein; PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis 14 c3gh8A_ 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:iodotyrosine dehalogenase 1; PDBTitle: crystal structure of mus musculus iodotyrosine deiodinase (iyd) bound2 to fmn and di-iodotyrosine (dit) 15 c3gr3B_ 100.0 16 PDB header:flavoprotein Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution 16 c3ge6B_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (exig_2970) from exiguobacterium sibiricum 255-15 at 1.85 a3 resolution 17 c2islB_ 100.0 19 PDB header:flavoprotein Chain: B: PDB Molecule:blub; PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form) 18 d2b67a1 100.0 20 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 19 d2frea1 100.0 19 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 20 d1kqba_ 100.0 18 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 21 d1noxa_ not modelled 100.0 25 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 22 c3eo8A_ not modelled 100.0 14 PDB header:flavoprotein Chain: A: PDB Molecule:blub-like flavoprotein; PDBTitle: crystal structure of blub-like flavoprotein (yp_001089088.1) from2 clostridium difficile 630 at 1.74 a resolution 23 d2ifaa1 not modelled 100.0 13 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 24 c2i7hE_ not modelled 100.0 15 PDB header:oxidoreductase Chain: E: PDB Molecule:nitroreductase-like family protein; PDBTitle: crystal structure of the nitroreductase-like family protein from2 bacillus cereus 25 c2h0uA_ not modelled 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-flavin oxidoreductase; PDBTitle: crystal structure of nad(p)h-flavin oxidoreductase from helicobacter2 pylori 26 c3ge5A_ not modelled 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nad(p)h:fmn oxidoreductase; PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310)2 from porphyromonas gingivalis w83 at 1.70 a resolution 27 d1ywqa1 not modelled 100.0 13 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:NADH oxidase/flavin reductase 28 c2wqfA_ not modelled 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:copper induced nitroreductase d; PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn 29 c3koqC_ not modelled 100.0 18 PDB header:oxidoreductase Chain: C: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein (cd3355) from2 clostridium difficile 630 at 1.58 a resolution 30 c3k6hB_ not modelled 100.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a nitroreductase family protein from2 agrobacterium tumefaciens str. c58 31 c3ek3A_ not modelled 100.0 9 PDB header:flavoprotein Chain: A: PDB Molecule:nitroreductase; PDBTitle: crystal structure of nitroreductase with bound fmn (yp_211706.1) from2 bacteroides fragilis nctc 9343 at 1.70 a resolution 32 c3gfaB_ not modelled 100.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (cd3205) from clostridium difficile 630 at 1.35 a resolution 33 c3e39A_ not modelled 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase in complex with fmn2 (dde_0787) from desulfovibrio desulfuricans subsp. at 1.70 a3 resolution 34 c3kwkA_ not modelled 100.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (np_809094.1) from bacteroides thetaiotaomicron vpi-3 5482 at 1.54 a resolution 35 c3g14B_ not modelled 100.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of nitroreductase family protein (yp_877874.1) from2 clostridium novyi nt at 1.75 a resolution 36 c3m5kA_ not modelled 100.0 11 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh dehydrogenase/nad(p)h nitroreductase; PDBTitle: crystal structure of putative nadh dehydrogenase/nad(p)h2 nitroreductase (bdi_1728) from parabacteroides distasonis atcc 85033 at 1.86 a resolution 37 c3pxvD_ not modelled 100.0 10 PDB header:oxidoreductase Chain: D: PDB Molecule:nitroreductase; PDBTitle: crystal structure of a nitroreductase with bound fmn (dhaf_2018) from2 desulfitobacterium hafniense dcb-2 at 2.30 a resolution 38 c3e10B_ not modelled 100.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadh oxidase; PDBTitle: crystal structure of putative nadh oxidase (np_348178.1)2 from clostridium acetobutylicum at 1.40 a resolution 39 c2r01A_ not modelled 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:nitroreductase family protein; PDBTitle: crystal structure of a putative fmn-dependent nitroreductase (ct0345)2 from chlorobium tepidum tls at 1.15 a resolution 40 c3hoiA_ not modelled 100.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:fmn-dependent nitroreductase bf3017; PDBTitle: crystal structure of fmn-dependent nitroreductase bf3017 from2 bacteroides fragilis nctc 9343 (yp_212631.1) from bacteroides3 fragilis nctc 9343 at 1.55 a resolution 41 c3hj9A_ not modelled 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of a putative nitroreductase (reut_a1228) from2 ralstonia eutropha jmp134 at 2.00 a resolution 42 c3bm2B_ not modelled 100.0 18 PDB header:oxidoreductase Chain: B: PDB Molecule:protein ydja; PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor 43 c3eo7A_ not modelled 100.0 11 PDB header:flavoprotein Chain: A: PDB Molecule:putative nitroreductase; PDBTitle: crystal structure of a putative nitroreductase (ava_2154) from2 anabaena variabilis atcc 29413 at 1.80 a resolution 44 d1vkwa_ not modelled 99.9 17 Fold:FMN-dependent nitroreductase-like Superfamily:FMN-dependent nitroreductase-like Family:Putative nitroreductase TM1586 45 d1oeyj_ not modelled 41.4 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 46 c3gyxJ_ not modelled 33.7 7 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 47 d1fs2b1 not modelled 26.9 21 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 48 c1nexC_ not modelled 26.5 17 PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 49 c2p1nD_ not modelled 23.8 20 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 50 d2ovra1 not modelled 23.8 20 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 51 c2ovqA_ not modelled 23.3 20 PDB header:transcription/cell cycle Chain: A: PDB Molecule:s-phase kinase-associated protein 1a; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 52 d1nexa1 not modelled 21.2 17 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 53 d2oc6a1 not modelled 10.7 13 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 54 d3elna1 not modelled 10.6 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 55 d1gefa_ not modelled 10.3 13 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 56 c2ds2B_ not modelled 9.6 18 PDB header:plant protein Chain: B: PDB Molecule:sweet protein mabinlin-2 chain b; PDBTitle: crystal structure of mabinlin ii 57 c3dnjB_ not modelled 9.5 10 PDB header:peptide binding protein Chain: B: PDB Molecule:atp-dependent clp protease adapter protein clps; PDBTitle: the structure of the caulobacter crescentus clps protease2 adaptor protein in complex with a n-end rule peptide 58 c3nznA_ not modelled 9.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1 59 d2ic1a1 not modelled 6.9 20 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 60 d2p5zx2 not modelled 6.9 13 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 61 c2kl4A_ not modelled 6.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2032 protein; PDBTitle: nmr structure of the protein nb7804a 62 c3ewgA_ not modelled 6.3 17 PDB header:transcription Chain: A: PDB Molecule:putative transcription antitermination protein nusg; PDBTitle: crystal structure of the n-terminal domain of nusg (ngn) from2 methanocaldococcus jannaschii 63 d2i8da1 not modelled 6.1 8 Fold:Secretion chaperone-like Superfamily:YdhG-like Family:YdhG-like 64 d1vlia1 not modelled 5.6 13 Fold:beta-clip Superfamily:AFP III-like domain Family:AFP III-like domain 65 d2ra7a1 not modelled 5.4 13 Fold:Four-helical up-and-down bundle Superfamily:FAT domain of focal adhesion kinase Family:FAT domain of focal adhesion kinase 66 d1vbga1 not modelled 5.3 7 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate phosphate dikinase, C-terminal domain 67 d1vfsa1 not modelled 5.3 27 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Alanine racemase 68 d3ddva1 not modelled 5.2 10 Fold:Chorismate lyase-like Superfamily:Chorismate lyase-like Family:UTRA domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0