Secondary structure and disorder prediction

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Sequence		M	A	K	N	R	S	R	R	L	R	K	K	M	H	I	D	E	F	Q	E	L	G	F	S	V	A	W	R	F	P	E	G	T	S	E	E	Q	I	D	K	T	V	D	D	F	I	N	E	V	I	E	P	N	K	L	A	F	D	G	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Sequence		G	Y	L	A	W	E	G	L	I	C	M	Q	E	I	G	K	C	T	E	E	H	Q	A	I	V	R	K	W	L	E	E	R	K	L	D	E	V	R	T	S	E	L	F	D	V	W	W	D
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?																														?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qd7 chain X Region: 6 - 101 Aligned: 83 Modelled: 96 Confidence: 51.9% Identity: 14% PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli Phyre2 PDB 2kvo chain A Region: 24 - 58 Aligned: 33 Modelled: 35 Confidence: 34.1% Identity: 18% PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii reaction center psb28 protein; PDBTitle: solution nmr structure of photosystem ii reaction center psb28 protein2 from synechocystis sp.(strain pcc 6803), northeast structural3 genomics consortium target sgr171 Phyre2 PDB 1o0s chain A domain 2 Region: 33 - 68 Aligned: 32 Modelled: 36 Confidence: 24.6% Identity: 16% Fold: Aminoacid dehydrogenase-like, N-terminal domain Superfamily: Aminoacid dehydrogenase-like, N-terminal domain Family: Malic enzyme N-domain Phyre2 PDB 3h11 chain A Region: 18 - 57 Aligned: 38 Modelled: 40 Confidence: 22.8% Identity: 21% PDB header:apoptosis Chain: A: PDB Molecule:casp8 and fadd-like apoptosis regulator; PDBTitle: zymogen caspase-8:c-flipl protease domain complex Phyre2 PDB 1nd9 chain A Region: 42 - 90 Aligned: 34 Modelled: 35 Confidence: 22.0% Identity: 18% Fold: Putative DNA-binding domain Superfamily: Putative DNA-binding domain Family: N-terminal subdomain of bacterial translation initiation factor IF2 Phyre2 PDB 1kkh chain A domain 2 Region: 32 - 100 Aligned: 60 Modelled: 69 Confidence: 21.7% Identity: 22% Fold: Ferredoxin-like Superfamily: GHMP Kinase, C-terminal domain Family: Mevalonate kinase Phyre2 PDB 1pj3 chain A domain 2 Region: 33 - 49 Aligned: 17 Modelled: 13 Confidence: 20.6% Identity: 24% Fold: Aminoacid dehydrogenase-like, N-terminal domain Superfamily: Aminoacid dehydrogenase-like, N-terminal domain Family: Malic enzyme N-domain Phyre2 PDB 3g6i chain A Region: 76 - 93 Aligned: 18 Modelled: 18 Confidence: 18.1% Identity: 33% PDB header:unknown function Chain: A: PDB Molecule:putative outer membrane protein, part of carbohydrate PDBTitle: crystal structure of an outer membrane protein, part of a putative2 carbohydrate binding complex (bt_1022) from bacteroides3 thetaiotaomicron vpi-5482 at 1.93 a resolution Phyre2 PDB 1gq2 chain A domain 2 Region: 33 - 49 Aligned: 17 Modelled: 13 Confidence: 17.8% Identity: 24% Fold: Aminoacid dehydrogenase-like, N-terminal domain Superfamily: Aminoacid dehydrogenase-like, N-terminal domain Family: Malic enzyme N-domain Phyre2 PDB 1m72 chain A Region: 18 - 46 Aligned: 27 Modelled: 29 Confidence: 17.6% Identity: 30% Fold: Caspase-like Superfamily: Caspase-like Family: Caspase catalytic domain Phyre2 PDB 2kjw chain A Region: 23 - 54 Aligned: 31 Modelled: 32 Confidence: 17.5% Identity: 10% PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: solution structure and backbone dynamics of the permutant2 p54-55 Phyre2 PDB 2nn3 chain D Region: 18 - 57 Aligned: 38 Modelled: 40 Confidence: 17.5% Identity: 21% PDB header:hydrolase Chain: D: PDB Molecule:caspase-1; PDBTitle: structure of pro-sf-caspase-1 Phyre2 PDB 1yg2 chain A Region: 66 - 92 Aligned: 27 Modelled: 27 Confidence: 17.3% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PadR-like Phyre2 PDB 1v33 chain A Region: 40 - 91 Aligned: 51 Modelled: 51 Confidence: 17.1% Identity: 10% Fold: Prim-pol domain Superfamily: Prim-pol domain Family: PriA-like Phyre2 PDB 1kmc chain B Region: 18 - 57 Aligned: 38 Modelled: 40 Confidence: 16.8% Identity: 18% PDB header:apoptosis/hydrolase Chain: B: PDB Molecule:caspase-7; PDBTitle: crystal structure of the caspase-7 / xiap-bir2 complex Phyre2 PDB 2wzp chain R Region: 89 - 108 Aligned: 20 Modelled: 20 Confidence: 16.4% Identity: 20% PDB header:viral protein Chain: R: PDB Molecule:lactococcal phage p2 orf16; PDBTitle: structures of lactococcal phage p2 baseplate shed light on2 a novel mechanism of host attachment and activation in3 siphoviridae Phyre2 PDB 1o0s chain B Region: 33 - 68 Aligned: 32 Modelled: 36 Confidence: 16.2% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent malic enzyme; PDBTitle: crystal structure of ascaris suum malic enzyme complexed with nadh Phyre2 PDB 2fsq chain A domain 1 Region: 4 - 52 Aligned: 49 Modelled: 49 Confidence: 15.8% Identity: 8% Fold: LigT-like Superfamily: LigT-like Family: Atu0111-like Phyre2 PDB 2zqe chain A Region: 26 - 101 Aligned: 62 Modelled: 76 Confidence: 15.3% Identity: 10% PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 Phyre2 PDB 1t1e chain A domain 2 Region: 78 - 101 Aligned: 24 Modelled: 24 Confidence: 15.0% Identity: 25% Fold: Ferredoxin-like Superfamily: Protease propeptides/inhibitors Family: Subtilase propeptides/inhibitors Phyre2 1 c3qd7X_ 2 c2kvoA_ 3 d1o0sa2 4 c3h11A_ 5 d1nd9a_ 6 d1kkha2 7 d1pj3a2 8 c3g6iA_ 9 d1gq2a2 10 d1m72a_ 11 c2kjwA_ 12 c2nn3D_ 13 d1yg2a_ 14 d1v33a_ 15 c1kmcB_ 16 c2wzpR_ 17 c1o0sB_ 18 d2fsqa1 19 c2zqeA_ 20 d1t1ea2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qd7X_ 51.9 14 PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein ydal; PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli 2 c2kvoA_ 34.1 18 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii reaction center psb28 protein; PDBTitle: solution nmr structure of photosystem ii reaction center psb28 protein2 from synechocystis sp.(strain pcc 6803), northeast structural3 genomics consortium target sgr171 3 d1o0sa2 24.6 16 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 4 c3h11A_ 22.8 21 PDB header:apoptosis Chain: A: PDB Molecule:casp8 and fadd-like apoptosis regulator; PDBTitle: zymogen caspase-8:c-flipl protease domain complex 5 d1nd9a_ 22.0 18 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:N-terminal subdomain of bacterial translation initiation factor IF2 6 d1kkha2 21.7 22 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate kinase 7 d1pj3a2 20.6 24 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 8 c3g6iA_ 18.1 33 PDB header:unknown function Chain: A: PDB Molecule:putative outer membrane protein, part of carbohydrate PDBTitle: crystal structure of an outer membrane protein, part of a putative2 carbohydrate binding complex (bt_1022) from bacteroides3 thetaiotaomicron vpi-5482 at 1.93 a resolution 9 d1gq2a2 17.8 24 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Malic enzyme N-domain 10 d1m72a_ 17.6 30 Fold:Caspase-like Superfamily:Caspase-like Family:Caspase catalytic domain 11 c2kjwA_ 17.5 10 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: solution structure and backbone dynamics of the permutant2 p54-55 12 c2nn3D_ 17.5 21 PDB header:hydrolase Chain: D: PDB Molecule:caspase-1; PDBTitle: structure of pro-sf-caspase-1 13 d1yg2a_ 17.3 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PadR-like 14 d1v33a_ 17.1 10 Fold:Prim-pol domain Superfamily:Prim-pol domain Family:PriA-like 15 c1kmcB_ 16.8 18 PDB header:apoptosis/hydrolase Chain: B: PDB Molecule:caspase-7; PDBTitle: crystal structure of the caspase-7 / xiap-bir2 complex 16 c2wzpR_ 16.4 20 PDB header:viral protein Chain: R: PDB Molecule:lactococcal phage p2 orf16; PDBTitle: structures of lactococcal phage p2 baseplate shed light on2 a novel mechanism of host attachment and activation in3 siphoviridae 17 c1o0sB_ 16.2 16 PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent malic enzyme; PDBTitle: crystal structure of ascaris suum malic enzyme complexed with nadh 18 d2fsqa1 15.8 8 Fold:LigT-like Superfamily:LigT-like Family:Atu0111-like 19 c2zqeA_ 15.3 10 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 20 d1t1ea2 15.0 25 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 21 c2fp3A_ not modelled 13.3 26 PDB header:hydrolysis/apoptosis Chain: A: PDB Molecule:caspase nc; PDBTitle: crystal structure of the drosophila initiator caspase dronc 22 d1e1oa2 not modelled 13.0 10 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 23 d1k47a2 not modelled 12.6 11 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Phosphomevalonate kinase (PMK) 24 d1iyjb3 not modelled 10.8 57 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 25 d1j9ia_ not modelled 10.8 26 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Terminase gpNU1 subunit domain 26 c2wdpA_ not modelled 10.8 16 PDB header:hydrolase Chain: A: PDB Molecule:caspase-6; PDBTitle: crystal structure of ligand free human caspase-6 27 d1g71a_ not modelled 10.8 11 Fold:Prim-pol domain Superfamily:Prim-pol domain Family:PriA-like 28 d1miua3 not modelled 10.6 57 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 29 c2aw5A_ not modelled 10.5 24 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp-dependent malic enzyme; PDBTitle: crystal structure of a human malic enzyme 30 c1gz3B_ not modelled 10.5 24 PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent malic enzyme; PDBTitle: molecular mechanism for the regulation of human mitochondrial2 nad(p)+-dependent malic enzyme by atp and fumarate 31 c1qr6A_ not modelled 10.2 24 PDB header:oxidoreductase Chain: A: PDB Molecule:malic enzyme 2; PDBTitle: human mitochondrial nad(p)-dependent malic enzyme 32 d2cxaa1 not modelled 9.3 13 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:LFTR-like 33 c2cxaA_ not modelled 9.3 13 PDB header:transferase Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase; PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli 34 c2kl5A_ not modelled 9.3 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yutd; PDBTitle: solution nmr structure of protein yutd from b.subtilis, northeast2 structural genomics consortium target sr232 35 c2hqrA_ not modelled 9.2 20 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 36 c2ns6A_ not modelled 9.0 16 PDB header:hydrolase Chain: A: PDB Molecule:mobilization protein a; PDBTitle: crystal structure of the minimal relaxase domain of moba2 from plasmid r1162 37 d1jmxa1 not modelled 9.0 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 38 c3e4cB_ not modelled 9.0 21 PDB header:hydrolase Chain: B: PDB Molecule:caspase-1; PDBTitle: procaspase-1 zymogen domain crystal strucutre 39 c3f5bA_ not modelled 8.8 10 PDB header:transferase Chain: A: PDB Molecule:aminoglycoside n(6')acetyltransferase; PDBTitle: the crystal structure of aminoglycoside n(6')acetyltransferase from2 legionella pneumophila subsp. pneumophila str. philadelphia 1. 40 c3ew8A_ not modelled 8.4 16 PDB header:hydrolase Chain: A: PDB Molecule:histone deacetylase 8; PDBTitle: crystal structure analysis of human hdac8 d101l variant 41 c3mjhD_ not modelled 8.4 50 PDB header:protein transport Chain: D: PDB Molecule:early endosome antigen 1; PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1 42 d1pbya1 not modelled 8.2 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 43 c3fo8D_ not modelled 8.2 20 PDB header:viral protein Chain: D: PDB Molecule:tail sheath protein gp18; PDBTitle: crystal structure of the bacteriophage t4 tail sheath2 protein, protease resistant fragment gp18pr 44 c3k1tA_ not modelled 8.0 27 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase gsha; PDBTitle: crystal structure of putative gamma-glutamylcysteine synthetase2 (yp_546622.1) from methylobacillus flagellatus kt at 1.90 a3 resolution 45 c2hbzA_ not modelled 7.9 16 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-1; PDBTitle: crystal structure of human caspase-1 (arg286->ala, glu390->ala) in2 complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-3 propionylamino]-4-oxo-pentanoic acid (z-vad-fmk) 46 c2p7vA_ not modelled 7.7 8 PDB header:transcription Chain: A: PDB Molecule:regulator of sigma d; PDBTitle: crystal structure of the escherichia coli regulator of sigma 70, rsd,2 in complex with sigma 70 domain 4 47 d1zt2a1 not modelled 7.6 14 Fold:Prim-pol domain Superfamily:Prim-pol domain Family:PriA-like 48 d2juza1 not modelled 7.4 40 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 49 d1nw9b_ not modelled 7.2 11 Fold:Caspase-like Superfamily:Caspase-like Family:Caspase catalytic domain 50 c3iukB_ not modelled 7.1 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative bacterial protein of unknown function2 (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold3 similar to that of m32 carboxypeptidases 51 d1c3pa_ not modelled 6.8 18 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Histone deacetylase, HDAC 52 c2zxyA_ not modelled 6.7 0 PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus 53 c3kxeD_ not modelled 6.6 20 PDB header:protein binding Chain: D: PDB Molecule:antitoxin protein pard-1; PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex 54 d1c75a_ not modelled 6.6 26 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 55 d1dxxa2 not modelled 6.5 22 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 56 d1t64a_ not modelled 6.5 16 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Histone deacetylase, HDAC 57 c1nmqB_ not modelled 6.4 18 PDB header:apoptosis, hydrolase Chain: B: PDB Molecule:caspase-3; PDBTitle: extendend tethering: in situ assembly of inhibitors 58 c1cp3B_ not modelled 6.4 18 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:apopain; PDBTitle: crystal structure of the complex of apopain with the tetrapeptide2 inhibitor ace-dvad-fmc 59 c2bpbB_ not modelled 6.2 13 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 60 d2jrxa1 not modelled 6.1 35 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 61 c1w2lA_ not modelled 6.0 11 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase 62 d2i7pa2 not modelled 6.0 33 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 63 c2d89A_ not modelled 5.8 15 PDB header:structural protein, protein binding Chain: A: PDB Molecule:ehbp1 protein; PDBTitle: solution structure of the ch domain from human eh domain2 binding protein 1 64 c3a9fA_ not modelled 5.7 17 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the c-terminal domain of cytochrome cz2 from chlorobium tepidum 65 c3m3hA_ not modelled 5.7 11 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.75 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase from bacillus anthracis str. 'ames3 ancestor' 66 c1t1eA_ not modelled 5.6 25 PDB header:hydrolase Chain: A: PDB Molecule:kumamolisin; PDBTitle: high resolution crystal structure of the intact pro-2 kumamolisin, a sedolisin type proteinase (previously3 called kumamolysin or kscp) 67 c1kjkA_ not modelled 5.5 43 PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: solution structure of the lambda integrase amino-terminal2 domain 68 d1z1ba1 not modelled 5.5 43 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:lambda integrase N-terminal domain 69 d1cora_ not modelled 5.5 31 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 70 d2qtia1 not modelled 5.5 25 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 71 c3bboQ_ not modelled 5.4 45 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein l18; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 72 d1a56a_ not modelled 5.4 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 73 c3bqsB_ not modelled 5.4 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 listeria monocytogenes, trigonal form 74 d1aoaa2 not modelled 5.4 13 Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain 75 c2pebB_ not modelled 5.3 11 PDB header:oxidoreductase Chain: B: PDB Molecule:putative dioxygenase; PDBTitle: crystal structure of a putative dioxygenase (npun_f1925) from nostoc2 punctiforme pcc 73102 at 1.46 a resolution 76 d3c7bb2 not modelled 5.2 36 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:DsrA/DsrB N-terminal-domain-like 77 d1otfa_ not modelled 5.2 13 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 78 c1pyoA_ not modelled 5.2 13 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:caspase-2; PDBTitle: crystal structure of human caspase-2 in complex with acetyl-leu-asp-2 glu-ser-asp-cho 79 c1gd2G_ not modelled 5.1 29 PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna 80 c2hwvA_ not modelled 5.1 71 PDB header:transcription Chain: A: PDB Molecule:dna-binding response regulator vicr; PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0