Email l.a.kelley@imperial.ac.uk Description Q46793 Date Thu Jan 5 12:34:14 GMT 2012 Unique Job ID d5701b779f521790

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2g62A_ 83.5 21 PDB header:hydrolase activator Chain: A: PDB Molecule:protein phosphatase 2a, regulatory subunit b' (pr 53); PDBTitle: crystal structure of human ptpa 2 c3k5bE_ 80.4 14 PDB header:hydrolase Chain: E: PDB Molecule:v-type atp synthase subunit e; PDBTitle: crystal structure of the peripheral stalk of thermus thermophilus h+-2 atpase/synthase 3 d2ixoa1 67.7 14 Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like 4 d2ixma1 66.2 21 Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like 5 d2ixna1 50.8 14 Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like 6 c2yhbA_ 37.0 20 PDB header:rna binding protein Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2; PDBTitle: crystal structure of the n. crassa qde-2 ago mid-piwi domains 7 c2k88A_ 34.1 13 PDB header:hydrolase Chain: A: PDB Molecule:vacuolar proton pump subunit g; PDBTitle: association of subunit d (vma6p) and e (vma4p) with g2 (vma10p) and the nmr solution structure of subunit g (g1-3 59) of the saccharomyces cerevisiae v1vo atpase 8 c2yhaA_ 33.7 20 PDB header:rna binding protein Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2; PDBTitle: crystal structure of the n. crassa qde-2 ago mid-piwi2 domains 9 d1wmha_ 32.9 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 10 c2ktrA_ 24.6 14 PDB header:signaling protein, transport protein Chain: A: PDB Molecule:sequestosome-1; PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs 11 c1p0oA_ 22.3 21 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution of trp for gln and asp at position2 17 and 19 modification in sds-d25 micelles 12 c2kk7A_ 21.9 9 PDB header:hydrolase Chain: A: PDB Molecule:v-type atp synthase subunit e; PDBTitle: nmr solution structure of the n terminal domain of subunit e2 (e1-52) of a1ao atp synthase from methanocaldococcus3 jannaschii 13 c4a1aC_ 20.3 11 PDB header:ribosome Chain: C: PDB Molecule:rpl4; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 14 c3smaD_ 19.8 19 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 15 d2csba1 19.0 47 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 16 c2r18A_ 19.0 25 PDB header:viral protein Chain: A: PDB Molecule:capsid assembly protein vp3; PDBTitle: structural insights into the multifunctional protein vp3 of2 birnaviruses 17 d2zkmx4 18.5 20 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Mammalian PLC 18 d1qasa3 18.2 22 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Mammalian PLC 19 c3ebqA_ 17.2 16 PDB header:hydrolase Chain: A: PDB Molecule:molecule: pppde1 (permuted papain fold PDBTitle: crystal structure of human pppde1 20 d1mo0a_ 16.0 33 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 21 d1mr1c_ not modelled 15.5 23 Fold:SAND domain-like Superfamily:SAND domain-like Family:SMAD4-binding domain of oncoprotein Ski 22 c3c18B_ not modelled 15.1 17 PDB header:transferase Chain: B: PDB Molecule:nucleotidyltransferase-like protein; PDBTitle: crystal structure of nucleotidyltransferase-like protein2 (zp_00538802.1) from exiguobacterium sibiricum 255-15 at 1.90 a3 resolution 23 c3kbgA_ not modelled 14.5 18 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 24 d2od6a1 not modelled 14.4 33 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Marine metagenome family DABB1 25 c2jrmA_ not modelled 14.3 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ribosome modulation factor; PDBTitle: solution nmr structure of ribosome modulation factor vp1593 from2 vibrio parahaemolyticus. northeast structural genomics target vpr55 26 d2uz9a1 not modelled 14.0 29 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:SAH/MTA deaminase-like 27 c1djyB_ not modelled 13.2 32 PDB header:lipid degradation Chain: B: PDB Molecule:phosphoinositide-specific phospholipase c, PDBTitle: phosphoinositide-specific phospholipase c-delta1 from rat2 complexed with inositol-2,4,5-trisphosphate 28 d1ubea2 not modelled 13.0 32 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 29 d1mo6a2 not modelled 12.8 28 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 30 c2qsjB_ not modelled 12.8 13 PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi 31 c2q1kA_ not modelled 12.7 27 PDB header:chaperone Chain: A: PDB Molecule:asce; PDBTitle: cyrstal structure of asce from aeromonas hydrophilla 32 d1ii2a2 not modelled 12.6 19 Fold:PEP carboxykinase N-terminal domain Superfamily:PEP carboxykinase N-terminal domain Family:PEP carboxykinase N-terminal domain 33 d1u94a2 not modelled 12.5 32 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 34 d1h3oa_ not modelled 11.9 41 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 35 c1h3oA_ not modelled 11.9 41 PDB header:transcription/tbp-associated factors Chain: A: PDB Molecule:transcription initiation factor tfiid 135 kda PDBTitle: crystal structure of the human taf4-taf122 (tafii135-tafii20) complex 36 c2yy8B_ not modelled 11.8 18 PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine 37 c3se4B_ not modelled 11.7 11 PDB header:immune system receptor Chain: B: PDB Molecule:interferon omega-1; PDBTitle: human ifnw-ifnar ternary complex 38 c3a2nF_ not modelled 11.6 8 PDB header:hydrolase Chain: F: PDB Molecule:haloalkane dehalogenase; PDBTitle: crystal structure of dbja (wild type type ii p21) 39 c2y6vB_ not modelled 11.5 16 PDB header:hydrolase Chain: B: PDB Molecule:peroxisomal membrane protein lpx1; PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i) 40 c1m2zE_ not modelled 11.3 37 PDB header:hormone/hormone activator Chain: E: PDB Molecule:nuclear receptor coactivator 2; PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif 41 c3izcW_ not modelled 11.3 17 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 42 c2fjuB_ not modelled 11.3 28 PDB header:signaling protein,apoptosis/hydrolase Chain: B: PDB Molecule:1-phosphatidylinositol-4,5-bisphosphate PDBTitle: activated rac1 bound to its effector phospholipase c beta 2 43 c2xzmW_ not modelled 11.0 24 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 44 d1jyaa_ not modelled 11.0 25 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 45 c1m2zB_ not modelled 10.8 37 PDB header:hormone/hormone activator Chain: B: PDB Molecule:nuclear receptor coactivator 2; PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif 46 d1eg3a2 not modelled 10.7 15 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 47 d1b5la_ not modelled 10.3 13 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Interferons/interleukin-10 (IL-10) 48 d1l2pa_ not modelled 10.3 14 Fold:Single transmembrane helix Superfamily:F1F0 ATP synthase subunit B, membrane domain Family:F1F0 ATP synthase subunit B, membrane domain 49 c2pd0D_ not modelled 10.2 29 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: protein cgd2_2020 from cryptosporidium parvum 50 d1rh2a_ not modelled 10.2 16 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Interferons/interleukin-10 (IL-10) 51 c2dl1A_ not modelled 10.0 10 PDB header:protein transport Chain: A: PDB Molecule:spartin; PDBTitle: solution structure of the mit domain from human spartin 52 c2dp3A_ not modelled 9.8 22 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia 53 c3izbD_ not modelled 9.5 20 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 54 c1yyaA_ not modelled 9.5 14 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of tt0473, putative triosephosphate isomerase from2 thermus thermophilus hb8 55 d1jrma_ not modelled 9.3 21 Fold:YggU-like Superfamily:YggU-like Family:YggU-like 56 d2jdia1 not modelled 9.2 17 Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase 57 c3iz6D_ not modelled 9.2 6 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 58 c3oaaO_ not modelled 9.0 6 PDB header:hydrolase/transport protein Chain: O: PDB Molecule:atp synthase gamma chain; PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon 59 c1r2fB_ not modelled 9.0 12 PDB header:oxidoreductase Chain: B: PDB Molecule:protein (ribonucleotide reductase r2); PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium 60 c3ikmD_ not modelled 8.9 26 PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme 61 d1mj5a_ not modelled 8.9 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloalkane dehalogenase 62 d1r2fa_ not modelled 8.8 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 63 c2h0dB_ not modelled 8.6 28 PDB header:metal binding protein/ligase Chain: B: PDB Molecule:ubiquitin ligase protein ring2; PDBTitle: structure of a bmi-1-ring1b polycomb group ubiquitin ligase complex 64 d1asha_ not modelled 8.6 14 Fold:Globin-like Superfamily:Globin-like Family:Globins 65 d1q59a_ not modelled 8.6 17 Fold:Toxins' membrane translocation domains Superfamily:Bcl-2 inhibitors of programmed cell death Family:Bcl-2 inhibitors of programmed cell death 66 c3d8kD_ not modelled 8.4 17 PDB header:hydrolase Chain: D: PDB Molecule:protein phosphatase 2c; PDBTitle: crsytal structure of a phosphatase from a toxoplasma gondii 67 c4hb1A_ not modelled 8.3 13 PDB header:designed helical bundle Chain: A: PDB Molecule:dhp1; PDBTitle: a designed four helix bundle protein. 68 c2q8fA_ not modelled 8.2 7 PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; PDBTitle: structure of pyruvate dehydrogenase kinase isoform 1 69 d1nw3a_ not modelled 8.1 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Catalytic, N-terminal domain of histone methyltransferase Dot1l 70 c1nw3A_ not modelled 8.1 14 PDB header:transferase Chain: A: PDB Molecule:histone methyltransferase dot1l; PDBTitle: structure of the catalytic domain of human dot1l, a non-set2 domain nucleosomal histone methyltransferase 71 d1xp8a2 not modelled 7.8 16 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 72 d1a77a1 not modelled 7.8 15 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 73 c2yysA_ not modelled 7.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:proline iminopeptidase-related protein; PDBTitle: crystal structure of the proline iminopeptidase-related protein2 ttha1809 from thermus thermophilus hb8 74 d1joga_ not modelled 7.7 5 Fold:Four-helical up-and-down bundle Superfamily:Nucleotidyltransferase substrate binding subunit/domain Family:Family 1 bi-partite nucleotidyltransferase subunit 75 c3eb7B_ not modelled 7.7 10 PDB header:toxin Chain: B: PDB Molecule:insecticidal delta-endotoxin cry8ea1; PDBTitle: crystal structure of insecticidal delta-endotoxin cry8ea1 from2 bacillus thuringiensis at 2.2 angstroms resolution 76 d1hx8a1 not modelled 7.6 9 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:Phosphoinositide-binding clathrin adaptor, domain 2 77 d2jq9a1 not modelled 7.6 13 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 78 d1mzga_ not modelled 7.6 21 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 79 d1k0wa_ not modelled 7.6 17 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 80 c2xmzA_ not modelled 7.5 14 PDB header:lyase Chain: A: PDB Molecule:hydrolase, alpha/beta hydrolase fold family; PDBTitle: structure of menh from s. aureus 81 d1ttja_ not modelled 7.5 10 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 82 c4a1dM_ not modelled 7.5 20 PDB header:ribosome Chain: M: PDB Molecule:ribosomal protein l22; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. 83 c3f6cB_ not modelled 7.4 9 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 84 c2rreA_ not modelled 7.3 29 PDB header:nuclear protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure and function of the n-terminal nucleolin binding domain of2 nuclear valocine containing protein like 2 (nvl2) harboring a3 nucleolar localization signal 85 c3e6qL_ not modelled 7.3 20 PDB header:isomerase Chain: L: PDB Molecule:putative 5-carboxymethyl-2-hydroxymuconate isomerase; PDBTitle: putative 5-carboxymethyl-2-hydroxymuconate isomerase from pseudomonas2 aeruginosa. 86 d1ea0a3 not modelled 7.2 11 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 87 d1wfda_ not modelled 7.1 16 Fold:Spectrin repeat-like Superfamily:MIT domain Family:MIT domain 88 c3lruA_ not modelled 7.0 18 PDB header:rna binding protein Chain: A: PDB Molecule:pre-mrna-processing-splicing factor 8; PDBTitle: hprp8 non-native subdomain 89 c2xoaA_ not modelled 7.0 11 PDB header:metal transport Chain: A: PDB Molecule:ryanodine receptor 1; PDBTitle: crystal structure of the n-terminal three domains of the2 skeletal muscle ryanodine receptor (ryr1) 90 d1k3ia1 not modelled 6.9 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 91 d1fkma1 not modelled 6.9 22 Fold:Left-handed superhelix Superfamily:Ypt/Rab-GAP domain of gyp1p Family:Ypt/Rab-GAP domain of gyp1p 92 d2cw9a1 not modelled 6.9 31 Fold:Cystatin-like Superfamily:NTF2-like Family:TIM44-like 93 d1ukfa_ not modelled 6.9 18 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Avirulence protein Avrpph3 94 d1ijdb_ not modelled 6.9 17 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 95 d1tuaa1 not modelled 6.9 13 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 96 c2o8gJ_ not modelled 6.8 15 PDB header:hydrolase/inhibitor Chain: J: PDB Molecule:protein phosphatase inhibitor 2; PDBTitle: rat pp1c gamma complexed with mouse inhibitor-2 97 d2gpia1 not modelled 6.7 14 Fold:Shew3726-like Superfamily:Shew3726-like Family:Shew3726-like 98 c2z7bA_ not modelled 6.6 6 PDB header:lyase Chain: A: PDB Molecule:mlr6791 protein; PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase 99 c2rmrA_ not modelled 6.5 21 PDB header:transcription Chain: A: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of msin3a pah1 domain