Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	G	L	P	L	I	S	R	R	R	L	L	T	A	M	A	L	S	P	L	L	W	Q	M	N	T	A	H	A	A	A	I	D	P	N	R	I	V	A	L	E	W	L	P	V	E	L	L	L	A	L	G	I	V	P	Y	G	V	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?							?		?	?					?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	T	I	N	Y	R	L	W	V	S	E	P	P	L	P	D	S	V	I	D	V	G	L	R	T	E	P	N	L	E	L	L	T	E	M	K	P	S	F	M	V	W	S	A	G	Y	G	P	S	P	E	M	L	A	R	I	A	P	G	R
Secondary structure
SS confidence
Disorder						?	?	?					?			?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	F	N	F	S	D	G	K	Q	P	L	A	M	A	R	K	S	L	T	E	M	A	D	L	L	N	L	Q	S	A	A	E	T	H	L	A	Q	Y	E	D	F	I	R	S	M	K	P	R	F	V	K	R	G	A	R	P	L	L	L	T
Secondary structure
SS confidence
Disorder							?	?																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	L	I	D	P	R	H	M	L	V	F	G	P	N	S	L	F	Q	E	I	L	D	E	Y	G	I	P	N	A	W	Q	G	E	T	N	F	W	G	S	T	A	V	S	I	D	R	L	A	A	Y	K	D	V	D	V	L	C	F	D	H
Secondary structure
SS confidence
Disorder																															?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Sequence		D	N	S	K	D	M	D	A	L	M	A	T	P	L	W	Q	A	M	P	F	V	R	A	G	R	F	Q	R	V	P	A	V	W	F	Y	G	A	T	L	S	A	M	H	F	V	R	V	L	D	N	A	I	G	G	K	A
Secondary structure
SS confidence
Disorder																																			?																		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1esz chain A Region: 34 - 292 Aligned: 259 Modelled: 259 Confidence: 100.0% Identity: 100% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Periplasmic ferric siderophore binding protein FhuD Phyre2 PDB 3eiw chain A Region: 32 - 295 Aligned: 261 Modelled: 264 Confidence: 100.0% Identity: 21% PDB header:transport protein Chain: A: PDB Molecule:htsa protein; PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa Phyre2 PDB 3gfv chain A Region: 32 - 295 Aligned: 261 Modelled: 264 Confidence: 100.0% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding PDBTitle: crystal structure of petrobactin-binding protein yclq from2 bacillu subtilis Phyre2 PDB 2q8p chain A Region: 37 - 293 Aligned: 248 Modelled: 257 Confidence: 100.0% Identity: 17% PDB header:metal transport Chain: A: PDB Molecule:iron-regulated surface determinant e; PDBTitle: crystal structure of selenomethionine labelled s. aureus isde2 complexed with heme Phyre2 PDB 2r7a chain C Region: 36 - 293 Aligned: 248 Modelled: 258 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae Phyre2 PDB 2chu chain A domain 1 Region: 32 - 293 Aligned: 250 Modelled: 262 Confidence: 100.0% Identity: 17% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 2r79 chain A Region: 35 - 296 Aligned: 252 Modelled: 262 Confidence: 100.0% Identity: 22% PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa Phyre2 PDB 3md9 chain A Region: 36 - 293 Aligned: 246 Modelled: 255 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut; PDBTitle: structure of apo form of a periplasmic heme binding protein Phyre2 PDB 3psh chain A Region: 32 - 293 Aligned: 258 Modelled: 262 Confidence: 100.0% Identity: 14% PDB header:metal transport Chain: A: PDB Molecule:protein hi_1472; PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate) Phyre2 PDB 3mwg chain A Region: 36 - 295 Aligned: 255 Modelled: 253 Confidence: 100.0% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein PDBTitle: crystal structure of staphylococcus aureus sira Phyre2 PDB 3be5 chain D Region: 32 - 296 Aligned: 257 Modelled: 263 Confidence: 100.0% Identity: 18% PDB header:metal transport Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein Phyre2 PDB 2phz chain A domain 1 Region: 32 - 293 Aligned: 257 Modelled: 262 Confidence: 100.0% Identity: 16% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 2phz chain A Region: 32 - 293 Aligned: 257 Modelled: 258 Confidence: 100.0% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:iron-uptake system-binding protein; PDBTitle: crystal structure of iron-uptake system-binding protein2 feua from bacillus subtilis. northeast structural genomics3 target sr580. Phyre2 PDB 3g9q chain A Region: 32 - 294 Aligned: 248 Modelled: 258 Confidence: 100.0% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:ferrichrome-binding protein; PDBTitle: crystal structure of the fhud fold-family bsu3320, a periplasmic2 binding protein component of a fep/fec-like ferrichrome abc3 transporter from bacillus subtilis. northeast structural genomics4 consortium target sr577a Phyre2 PDB 1n2z chain A Region: 34 - 293 Aligned: 240 Modelled: 260 Confidence: 100.0% Identity: 18% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TroA-like Phyre2 PDB 2x4l chain A Region: 32 - 293 Aligned: 257 Modelled: 260 Confidence: 100.0% Identity: 16% PDB header:transport Chain: A: PDB Molecule:ferric-siderophore receptor protein; PDBTitle: crystal structure of dese, a ferric-siderophore receptor2 protein from streptomyces coelicolor Phyre2 PDB 2etv chain A domain 1 Region: 32 - 293 Aligned: 252 Modelled: 262 Confidence: 100.0% Identity: 12% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 1qh8 chain A Region: 47 - 295 Aligned: 214 Modelled: 222 Confidence: 96.7% Identity: 17% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 1m1n chain A Region: 47 - 295 Aligned: 217 Modelled: 223 Confidence: 96.3% Identity: 15% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 3pdi chain G Region: 88 - 295 Aligned: 187 Modelled: 208 Confidence: 96.2% Identity: 16% PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen Phyre2 PDB 3obi chain C Region: 7 - 124 Aligned: 116 Modelled: 110 Confidence: 79.0% Identity: 12% PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution Phyre2 1 d1esza_ 2 c3eiwA_ 3 c3gfvA_ 4 c2q8pA_ 5 c2r7aC_ 6 d2chua1 7 c2r79A_ 8 c3md9A_ 9 c3pshA_ 10 c3mwgA_ 11 c3be5D_ 12 d2phza1 13 c2phzA_ 14 c3g9qA_ 15 d1n2za_ 16 c2x4lA_ 17 d2etva1 18 d1qh8a_ 19 d1m1na_ 20 c3pdiG_ 21 22 23 24 25 26 27 28 c3obiC_ 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1esza_ 100.0 100 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Periplasmic ferric siderophore binding protein FhuD 2 c3eiwA_ 100.0 21 PDB header:transport protein Chain: A: PDB Molecule:htsa protein; PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa 3 c3gfvA_ 100.0 16 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding PDBTitle: crystal structure of petrobactin-binding protein yclq from2 bacillu subtilis 4 c2q8pA_ 100.0 17 PDB header:metal transport Chain: A: PDB Molecule:iron-regulated surface determinant e; PDBTitle: crystal structure of selenomethionine labelled s. aureus isde2 complexed with heme 5 c2r7aC_ 100.0 17 PDB header:transport protein Chain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae 6 d2chua1 100.0 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 7 c2r79A_ 100.0 22 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa 8 c3md9A_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut; PDBTitle: structure of apo form of a periplasmic heme binding protein 9 c3pshA_ 100.0 14 PDB header:metal transport Chain: A: PDB Molecule:protein hi_1472; PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate) 10 c3mwgA_ 100.0 16 PDB header:transport protein Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein PDBTitle: crystal structure of staphylococcus aureus sira 11 c3be5D_ 100.0 18 PDB header:metal transport Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein 12 d2phza1 100.0 16 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 13 c2phzA_ 100.0 16 PDB header:transport protein Chain: A: PDB Molecule:iron-uptake system-binding protein; PDBTitle: crystal structure of iron-uptake system-binding protein2 feua from bacillus subtilis. northeast structural genomics3 target sr580. 14 c3g9qA_ 100.0 15 PDB header:transport protein Chain: A: PDB Molecule:ferrichrome-binding protein; PDBTitle: crystal structure of the fhud fold-family bsu3320, a periplasmic2 binding protein component of a fep/fec-like ferrichrome abc3 transporter from bacillus subtilis. northeast structural genomics4 consortium target sr577a 15 d1n2za_ 100.0 18 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 16 c2x4lA_ 100.0 16 PDB header:transport Chain: A: PDB Molecule:ferric-siderophore receptor protein; PDBTitle: crystal structure of dese, a ferric-siderophore receptor2 protein from streptomyces coelicolor 17 d2etva1 100.0 12 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 18 d1qh8a_ 96.7 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 19 d1m1na_ 96.3 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 20 c3pdiG_ 96.2 16 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 21 d1mioa_ not modelled 95.4 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 22 d1qh8b_ not modelled 95.1 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 23 d1m1nb_ not modelled 93.8 10 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 24 d1miob_ not modelled 92.0 10 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 25 c3aerC_ not modelled 91.7 14 PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 26 c3pdiB_ not modelled 89.0 11 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 27 c1fmtA_ not modelled 82.5 18 PDB header:formyltransferase Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase; PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli 28 c3obiC_ 79.0 12 PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution 29 c1z7eC_ not modelled 73.5 16 PDB header:hydrolase Chain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna 30 c3nrbD_ not modelled 72.2 17 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 31 d1a6db2 not modelled 70.9 8 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 32 d1assa_ not modelled 70.5 8 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 33 d1gmla_ not modelled 70.0 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 34 d1fmta2 not modelled 69.9 18 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 35 d1q3qa2 not modelled 69.7 6 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 36 c3o1lB_ not modelled 67.3 15 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 37 c3dcjA_ not modelled 66.8 20 PDB header:transferase Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative 38 d2blna2 not modelled 66.1 16 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 39 c3cx3A_ not modelled 64.9 10 PDB header:metal binding protein Chain: A: PDB Molecule:lipoprotein; PDBTitle: crystal structure analysis of the streptococcus pneumoniae2 adcaii protein 40 c3tqrA_ not modelled 63.6 18 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii 41 d1a9xb2 not modelled 60.9 25 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 42 d1xvla1 not modelled 57.5 6 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 43 c1yrwA_ not modelled 55.6 16 PDB header:transferase Chain: A: PDB Molecule:protein arna; PDBTitle: crystal structure of e.coli arna transformylase domain 44 c3aerB_ not modelled 52.7 5 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 45 c2xdqB_ not modelled 46.6 13 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 46 c2yxbA_ not modelled 44.8 7 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 47 c3rfoA_ not modelled 43.8 16 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: crystal structure of methyionyl-trna formyltransferase from bacillus2 anthracis 48 c3louB_ not modelled 43.7 9 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 49 c3mfqB_ not modelled 43.6 11 PDB header:metal binding protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center 50 c2r8rB_ not modelled 41.6 14 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000 51 c1keeH_ not modelled 41.4 29 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 52 c3n0vD_ not modelled 41.4 12 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 53 c2xdqA_ not modelled 38.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 54 c3kcqA_ not modelled 34.8 15 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 anaplasma phagocytophilum 55 c3q0iA_ not modelled 33.9 17 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: methionyl-trna formyltransferase from vibrio cholerae 56 c3chgB_ not modelled 33.3 9 PDB header:ligand binding protein Chain: B: PDB Molecule:glycine betaine-binding protein; PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa 57 c2ov3A_ not modelled 32.3 15 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein component of an abc PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc2 bound 58 c2o1eB_ not modelled 32.0 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ycdh; PDBTitle: crystal structure of the metal-dependent lipoprotein ycdh2 from bacillus subtilis, northeast structural genomics3 target sr583 59 c2e76D_ not modelled 30.6 18 PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 60 c2qrvA_ not modelled 29.2 19 PDB header:transferase/transferase regulator Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a; PDBTitle: structure of dnmt3a-dnmt3l c-terminal domain complex 61 c3cu5B_ not modelled 27.8 6 PDB header:transcription regulator Chain: B: PDB Molecule:two component transcriptional regulator, arac family; PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg 62 d1psza_ not modelled 25.6 10 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 63 c3ndjA_ not modelled 24.3 10 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product 64 d1zgha2 not modelled 23.8 13 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 65 d2czca2 not modelled 23.2 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 66 c2jzcA_ not modelled 22.7 9 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1 67 d1s3ia2 not modelled 22.4 11 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 68 c3dapB_ not modelled 19.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase; PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline 69 d2bw0a2 not modelled 19.1 10 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 70 c3nhzA_ not modelled 17.8 11 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 71 c2dc1A_ not modelled 17.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:l-aspartate dehydrogenase; PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus 72 c1zghA_ not modelled 17.1 12 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: methionyl-trna formyltransferase from clostridium thermocellum 73 c2fynO_ not modelled 16.8 17 PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 74 d1krwa_ not modelled 15.1 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 75 d1l7da1 not modelled 15.0 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 76 c2ayxA_ not modelled 14.2 8 PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain 77 d1q7ea_ not modelled 12.8 25 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 78 c2gm2A_ not modelled 12.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 79 d2cyja1 not modelled 12.5 16 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 80 c3ssoE_ not modelled 12.5 21 PDB header:transferase Chain: E: PDB Molecule:methyltransferase; PDBTitle: myce methyltransferase from the mycinamycin biosynthetic pathway in2 complex with mg and sah, crystal form 2 81 d1jkxa_ not modelled 12.5 14 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 82 c2zwrA_ not modelled 12.2 15 PDB header:hydrolase Chain: A: PDB Molecule:metallo-beta-lactamase superfamily protein; PDBTitle: crystal structure of ttha1623 from thermus thermophilus hb8 83 c2g04B_ not modelled 11.9 6 PDB header:isomerase Chain: B: PDB Molecule:probable fatty-acid-coa racemase far; PDBTitle: crystal structure of fatty acid-coa racemase from mycobacterium2 tuberculosis h37rv 84 c2pq4B_ not modelled 11.7 19 PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide 85 c2rjnA_ not modelled 11.3 16 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 86 d1ihna_ not modelled 11.3 35 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 87 c2ph5A_ not modelled 11.3 15 PDB header:transferase Chain: A: PDB Molecule:homospermidine synthase; PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54 88 d1ys7a2 not modelled 11.0 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 89 c1s3iA_ not modelled 10.8 13 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the n terminal hydrolase domain of 10-2 formyltetrahydrofolate dehydrogenase 90 c3tqqA_ not modelled 10.8 11 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: structure of the methionyl-trna formyltransferase (fmt) from coxiella2 burnetii 91 c2ps3A_ not modelled 10.7 12 PDB header:metal transport Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: structure and metal binding properties of znua, a2 periplasmic zinc transporter from escherichia coli 92 c2z4dA_ not modelled 10.6 20 PDB header:nuclear protein Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn13; PDBTitle: nmr structures of yeast proteasome component rpn13 93 d2q4qa1 not modelled 10.6 17 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 94 d7reqb2 not modelled 10.4 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 95 d1x74a1 not modelled 10.1 24 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 96 d1swva_ not modelled 10.0 12 Fold:HAD-like Superfamily:HAD-like Family:Phosphonoacetaldehyde hydrolase-like 97 d1fmfa_ not modelled 10.0 18 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 98 d1pq4a_ not modelled 9.9 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 99 d1xk7a1 not modelled 9.8 18 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0