Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	P	I	F	S	R	G	P	S	L	Q	I	R	L	I	L	A	V	L	V	A	L	G	I	I	I	A	D	S	R	L	G	T	F	S	Q	I	R	T	Y	M	D	T	A	V	S	P	F	Y	F	V	S	N	A	P	R	E	L	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																						?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	G	V	S	Q	T	L	A	S	R	D	Q	L	E	L	E	N	R	A	L	R	Q	E	L	L	L	K	N	S	E	L	L	M	L	G	Q	Y	K	Q	E	N	A	R	L	R	E	L	L	G	S	P	L	R	Q	D	E	Q	K	M	V
Secondary structure
SS confidence
Disorder																																																		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	Q	V	I	S	T	V	N	D	P	Y	S	D	Q	V	V	I	D	K	G	S	V	N	G	V	Y	E	G	Q	P	V	I	S	D	K	G	V	V	G	Q	V	V	A	V	A	K	L	T	S	R	V	L	L	I	C	D	A	T	H	A
Secondary structure
SS confidence
Disorder																									?	?	?																																?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	P	I	Q	V	L	R	N	D	I	R	V	I	A	A	G	N	G	C	T	D	D	L	Q	L	E	H	L	P	A	N	T	D	I	R	V	G	D	V	L	V	T	S	G	L	G	G	R	F	P	E	G	Y	P	V	A	V	V	S	S
Secondary structure
SS confidence
Disorder																															?						?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	K	L	D	T	Q	R	A	Y	T	V	I	Q	A	R	P	T	A	G	L	Q	R	L	R	Y	L	L	L	L	W	G	A	D	R	N	G	A	N	P	M	T	P	E	E	V	H	R	V	A	N	E	R	L	M	Q	M	M	P	Q	V
Secondary structure
SS confidence
Disorder				?	?	?	?	?																									?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	P	S	P	D	A	M	G	P	K	L	P	E	P	A	T	G	I	A	Q	P	T	P	Q	Q	P	A	T	G	N	A	A	T	A	P	A	A	P	T	Q	P	A	A	N	R	S	P	Q	R	A	T	P	P	Q	S	G	A	Q	P	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.
Sequence		A	R	A	P	G	G	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j5u chain B Region: 78 - 272 Aligned: 195 Modelled: 195 Confidence: 100.0% Identity: 28% PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes Phyre2 PDB 2qf4 chain A Region: 116 - 277 Aligned: 162 Modelled: 162 Confidence: 100.0% Identity: 23% PDB header:structural protein Chain: A: PDB Molecule:cell shape determining protein mrec; PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form) Phyre2 PDB 2wvr chain B Region: 68 - 109 Aligned: 39 Modelled: 42 Confidence: 89.5% Identity: 26% PDB header:replication Chain: B: PDB Molecule:geminin; PDBTitle: human cdt1:geminin complex Phyre2 PDB 2zxx chain A Region: 68 - 109 Aligned: 39 Modelled: 39 Confidence: 89.0% Identity: 28% PDB header:cell cycle/replication Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of cdt1/geminin complex Phyre2 PDB 1t6f chain A Region: 69 - 107 Aligned: 36 Modelled: 36 Confidence: 86.3% Identity: 31% PDB header:cell cycle Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of the coiled-coil dimerization motif of2 geminin Phyre2 PDB 3m9b chain K Region: 69 - 235 Aligned: 160 Modelled: 167 Confidence: 85.9% Identity: 18% PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa Phyre2 PDB 1ci6 chain B Region: 70 - 97 Aligned: 28 Modelled: 28 Confidence: 81.3% Identity: 25% PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer Phyre2 PDB 2jdi chain A domain 2 Region: 158 - 224 Aligned: 65 Modelled: 67 Confidence: 81.0% Identity: 14% Fold: Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase Family: N-terminal domain of alpha and beta subunits of F1 ATP synthase Phyre2 PDB 1dip chain A Region: 73 - 108 Aligned: 33 Modelled: 36 Confidence: 80.7% Identity: 24% PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures Phyre2 PDB 1fxk chain C Region: 69 - 142 Aligned: 74 Modelled: 74 Confidence: 80.6% Identity: 11% Fold: Long alpha-hairpin Superfamily: Prefoldin Family: Prefoldin Phyre2 PDB 1fx0 chain A domain 2 Region: 158 - 224 Aligned: 65 Modelled: 67 Confidence: 80.4% Identity: 14% Fold: Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase Family: N-terminal domain of alpha and beta subunits of F1 ATP synthase Phyre2 PDB 1sky chain B domain 2 Region: 158 - 224 Aligned: 65 Modelled: 67 Confidence: 77.3% Identity: 20% Fold: Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase Family: N-terminal domain of alpha and beta subunits of F1 ATP synthase Phyre2 PDB 2xzr chain A Region: 42 - 110 Aligned: 69 Modelled: 69 Confidence: 76.4% Identity: 16% PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors Phyre2 PDB 2jee chain A Region: 61 - 106 Aligned: 46 Modelled: 46 Confidence: 74.6% Identity: 22% PDB header:cell cycle Chain: A: PDB Molecule:yiiu; PDBTitle: xray structure of e. coli yiiu Phyre2 PDB 2yy0 chain D Region: 75 - 108 Aligned: 31 Modelled: 34 Confidence: 71.1% Identity: 32% PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens Phyre2 PDB 1mab chain A domain 2 Region: 158 - 224 Aligned: 65 Modelled: 67 Confidence: 70.6% Identity: 14% Fold: Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase Family: N-terminal domain of alpha and beta subunits of F1 ATP synthase Phyre2 PDB 2oqq chain B Region: 70 - 108 Aligned: 36 Modelled: 36 Confidence: 70.1% Identity: 28% PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana Phyre2 PDB 1deb chain A Region: 63 - 108 Aligned: 43 Modelled: 43 Confidence: 69.8% Identity: 33% PDB header:structural protein Chain: A: PDB Molecule:adenomatous polyposis coli protein; PDBTitle: crystal structure of the n-terminal coiled coil domain from2 apc Phyre2 PDB 3pv4 chain A Region: 116 - 222 Aligned: 98 Modelled: 107 Confidence: 67.0% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:degq; PDBTitle: structure of legionella fallonii degq (delta-pdz2 variant) Phyre2 PDB 3mud chain A Region: 48 - 100 Aligned: 53 Modelled: 53 Confidence: 66.1% Identity: 19% PDB header:contractile protein Chain: A: PDB Molecule:dna repair protein xrcc4, tropomyosin alpha-1 chain; PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle Phyre2 1 c2j5uB_ 2 c2qf4A_ 3 c2wvrB_ 4 c2zxxA_ 5 c1t6fA_ 6 c3m9bK_ 7 c1ci6B_ 8 d2jdia2 9 c1dipA_ 10 d1fxkc_ 11 d1fx0a2 12 d1skyb2 13 c2xzrA_ 14 c2jeeA_ 15 c2yy0D_ 16 d1maba2 17 c2oqqB_ 18 c1debA_ 19 c3pv4A_ 20 c3mudA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2j5uB_ 100.0 28 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 2 c2qf4A_ 100.0 23 PDB header:structural protein Chain: A: PDB Molecule:cell shape determining protein mrec; PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form) 3 c2wvrB_ 89.5 26 PDB header:replication Chain: B: PDB Molecule:geminin; PDBTitle: human cdt1:geminin complex 4 c2zxxA_ 89.0 28 PDB header:cell cycle/replication Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of cdt1/geminin complex 5 c1t6fA_ 86.3 31 PDB header:cell cycle Chain: A: PDB Molecule:geminin; PDBTitle: crystal structure of the coiled-coil dimerization motif of2 geminin 6 c3m9bK_ 85.9 18 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 7 c1ci6B_ 81.3 25 PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 8 d2jdia2 81.0 14 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 9 c1dipA_ 80.7 24 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 10 d1fxkc_ 80.6 11 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 11 d1fx0a2 80.4 14 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 12 d1skyb2 77.3 20 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 13 c2xzrA_ 76.4 16 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 14 c2jeeA_ 74.6 22 PDB header:cell cycle Chain: A: PDB Molecule:yiiu; PDBTitle: xray structure of e. coli yiiu 15 c2yy0D_ 71.1 32 PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens 16 d1maba2 70.6 14 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 c2oqqB_ 70.1 28 PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana 18 c1debA_ 69.8 33 PDB header:structural protein Chain: A: PDB Molecule:adenomatous polyposis coli protein; PDBTitle: crystal structure of the n-terminal coiled coil domain from2 apc 19 c3pv4A_ 67.0 15 PDB header:hydrolase Chain: A: PDB Molecule:degq; PDBTitle: structure of legionella fallonii degq (delta-pdz2 variant) 20 c3mudA_ 66.1 19 PDB header:contractile protein Chain: A: PDB Molecule:dna repair protein xrcc4, tropomyosin alpha-1 chain; PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle 21 c1ce0B_ not modelled 60.5 25 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 22 c1t2kD_ not modelled 59.3 24 PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna 23 c2e43A_ not modelled 58.4 19 PDB header:transcription/dna Chain: A: PDB Molecule:ccaat/enhancer-binding protein beta; PDBTitle: crystal structure of c/ebpbeta bzip homodimer k269a mutant2 bound to a high affinity dna fragment 24 c2wukD_ not modelled 58.2 3 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 25 c3qh9A_ not modelled 58.2 21 PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil 26 c1fosE_ not modelled 57.7 24 PDB header:transcription/dna Chain: E: PDB Molecule:p55-c-fos proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 27 c2w6aB_ not modelled 57.3 30 PDB header:signaling protein Chain: B: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: x-ray structure of the dimeric git1 coiled-coil domain 28 c2r9vA_ not modelled 57.0 15 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution 29 c3c2qA_ not modelled 53.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of conserved putative lor/sdh protein2 from methanococcus maripaludis s2 30 c2jsnA_ not modelled 53.6 25 PDB header:protein transport Chain: A: PDB Molecule:trafficking protein particle complex subunit 4; PDBTitle: solution structure of the atypical pdz-like domain of2 synbindin 31 d2f1la1 not modelled 52.5 22 Fold:PRC-barrel domain Superfamily:PRC-barrel domain Family:RimM C-terminal domain-like 32 c1go4F_ not modelled 50.3 44 PDB header:cell cycle Chain: F: PDB Molecule:mad1 (mitotic arrest deficient)-like 1; PDBTitle: crystal structure of mad1-mad2 reveals a conserved mad22 binding motif in mad1 and cdc20. 33 c2ve7A_ not modelled 50.2 21 PDB header:cell cycle Chain: A: PDB Molecule:kinetochore protein hec1, kinetochore protein spc25; PDBTitle: crystal structure of a bonsai version of the human ndc802 complex 34 d1f6ga_ not modelled 47.6 9 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 35 c1rb1B_ not modelled 45.6 26 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 36 c3k7zA_ not modelled 45.6 26 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 37 c3k7zB_ not modelled 45.6 26 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 38 c1rb1A_ not modelled 45.6 26 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 39 c1swiA_ not modelled 45.6 26 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 40 c1rb6C_ not modelled 45.6 26 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 41 d1nppa2 not modelled 45.6 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 42 d1uklc_ not modelled 44.5 21 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 43 c1ij2C_ not modelled 44.4 26 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 44 d1nz9a_ not modelled 43.3 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 45 c1ij3C_ not modelled 43.3 26 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 46 c1ij3B_ not modelled 43.3 26 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 47 c2ywxA_ not modelled 42.8 13 PDB header:lyase Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii 48 c1ztaA_ not modelled 42.2 26 PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide 49 c1ij2B_ not modelled 42.2 26 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 50 c3a5tB_ not modelled 41.5 26 PDB header:transcription regulator/dna Chain: B: PDB Molecule:transcription factor mafg; PDBTitle: crystal structure of mafg-dna complex 51 c2zdiC_ not modelled 41.3 18 PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 52 c2kvqG_ not modelled 40.9 23 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 53 c2jvvA_ not modelled 40.9 23 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 54 c1gk7A_ not modelled 40.6 17 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 1a fragment (1a) 55 c2qe7C_ not modelled 40.0 23 PDB header:hydrolase Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 56 c3q4fG_ not modelled 39.5 17 PDB header:dna binding protein/protein binding Chain: G: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of xrcc4/xlf-cernunnos complex 57 c1ik9B_ not modelled 39.5 16 PDB header:gene regulation/ligase Chain: B: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of a xrcc4-dna ligase iv complex 58 c2o7hF_ not modelled 38.1 23 PDB header:transcription Chain: F: PDB Molecule:general control protein gcn4; PDBTitle: crystal structure of trimeric coiled coil gcn4 leucine zipper 59 c1ci6A_ not modelled 37.0 20 PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 60 d1am9a_ not modelled 36.6 21 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 61 c2nn6I_ not modelled 35.5 16 PDB header:hydrolase/transferase Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 62 d1xi8a3 not modelled 35.3 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 63 c1fosF_ not modelled 35.1 14 PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 64 c2gd7B_ not modelled 34.6 29 PDB header:transcription Chain: B: PDB Molecule:hexim1 protein; PDBTitle: the structure of the cyclin t-binding domain of hexim12 reveals the molecular basis for regulation of3 transcription elongation 65 d2z1ca1 not modelled 33.1 25 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 66 c1w5kB_ not modelled 32.0 35 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 67 c1w5kC_ not modelled 32.0 35 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 68 c1w5kD_ not modelled 32.0 35 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 69 c1w5kA_ not modelled 32.0 35 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 70 c1unxA_ not modelled 31.0 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 71 c2j66A_ not modelled 31.0 20 PDB header:lyase Chain: A: PDB Molecule:btrk; PDBTitle: structural characterisation of btrk decarboxylase from2 butirosin biosynthesis 72 c2w5eB_ not modelled 30.6 19 PDB header:hydrolase Chain: B: PDB Molecule:putative serine protease; PDBTitle: structural and biochemical analysis of human pathogenic2 astrovirus serine protease at 2.0 angstrom resolution 73 c1p9iA_ not modelled 30.4 23 PDB header:unknown function Chain: A: PDB Molecule:cortexillin i/gcn4 hybrid peptide; PDBTitle: coiled-coil x-ray structure at 1.17 a resolution 74 c3ipkA_ not modelled 30.0 18 PDB header:cell adhesion Chain: A: PDB Molecule:agi/ii; PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans 75 d2nn6i1 not modelled 29.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 76 c2je6I_ not modelled 29.9 18 PDB header:hydrolase Chain: I: PDB Molecule:exosome complex rna-binding protein 1; PDBTitle: structure of a 9-subunit archaeal exosome 77 c1gclC_ not modelled 29.6 29 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 78 c1gclB_ not modelled 29.6 29 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 79 c1gclA_ not modelled 29.6 29 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 80 c3bboW_ not modelled 29.5 25 PDB header:ribosome Chain: W: PDB Molecule:ribosomal protein l24; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 81 c1w5jD_ not modelled 29.3 35 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 82 c1w5jA_ not modelled 29.3 35 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 83 c1w5jB_ not modelled 29.3 35 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 84 c1w5jC_ not modelled 29.3 35 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 85 c2xv5A_ not modelled 29.1 24 PDB header:structural protein Chain: A: PDB Molecule:lamin-a/c; PDBTitle: human lamin a coil 2b fragment 86 c2rjzA_ not modelled 29.1 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa 87 c3e98B_ not modelled 28.1 28 PDB header:unknown function Chain: B: PDB Molecule:gaf domain of unknown function; PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution 88 d1fx0b2 not modelled 28.1 19 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 89 c1kmhA_ not modelled 28.0 14 PDB header:hydrolase Chain: A: PDB Molecule:atpase alpha subunit; PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin 90 c3e0eA_ not modelled 27.9 14 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 91 c2dyiA_ not modelled 27.7 32 PDB header:ribosome Chain: A: PDB Molecule:probable 16s rrna-processing protein rimm; PDBTitle: crystal structure of 16s ribosomal rna processing protein rimm from2 thermus thermophilus hb8 92 c1w5iA_ not modelled 27.7 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 93 c1uo2A_ not modelled 27.7 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 94 c1uo1B_ not modelled 27.7 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 95 c1unwB_ not modelled 27.6 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 96 c2ccfA_ not modelled 27.6 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel configuration of pli e20s 97 c1uo0A_ not modelled 27.6 29 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 98 c1uo0B_ not modelled 27.6 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 99 d1x87a_ not modelled 27.5 50 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 100 c1unxB_ not modelled 27.5 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 101 d1skye2 not modelled 27.4 29 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 102 d1mabb2 not modelled 27.3 24 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 103 c2w6fA_ not modelled 27.2 15 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha heart isoform, PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 2. 104 d2oa5a1 not modelled 27.0 17 Fold:BLRF2-like Superfamily:BLRF2-like Family:BLRF2-like 105 d2jdid2 not modelled 26.9 24 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 106 c1w5iB_ not modelled 26.2 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 107 c1uo2B_ not modelled 26.2 29 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 108 d1uwka_ not modelled 25.5 46 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 109 c3trhI_ not modelled 25.1 12 PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii 110 c3h9nA_ not modelled 24.5 25 PDB header:ribosomal protein Chain: A: PDB Molecule:ribosome maturation factor rimm; PDBTitle: crystal structure of the ribosome maturation factor rimm2 (hi0203) from h.influenzae. northeast structural genomics3 consortium target ir66. 111 d1j2za_ not modelled 24.5 9 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 112 c2f1lA_ not modelled 23.6 18 PDB header:unknown function Chain: A: PDB Molecule:16s rrna processing protein; PDBTitle: crystal structure of a putative 16s ribosomal rna processing protein2 rimm (pa3744) from pseudomonas aeruginosa at 2.46 a resolution 113 c1gd2G_ not modelled 23.4 23 PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna 114 d2otma1 not modelled 23.3 26 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:YjgF/L-PSP 115 c3l31B_ not modelled 23.3 38 PDB header:hydrolase Chain: B: PDB Molecule:probable manganase-dependent inorganic PDBTitle: crystal structure of the cbs and drtgg domains of the2 regulatory region of clostridium perfringens3 pyrophosphatase complexed with the inhibitor, amp 116 c2vpmB_ not modelled 23.2 25 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 117 d1wzua1 not modelled 22.9 19 Fold:NadA-like Superfamily:NadA-like Family:NadA-like 118 d1jjcb3 not modelled 22.9 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Myf domain 119 c2p3eA_ not modelled 22.9 25 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus 120 d2jf2a1 not modelled 22.8 0 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0