Email l.a.kelley@imperial.ac.uk Description P42632 Date Thu Jan 5 12:02:00 GMT 2012 Unique Job ID d2abf9bc589751ac

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1h16a_ 100.0 79 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 2 d1qhma_ 100.0 77 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 3 d1r9da_ 100.0 26 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 4 c2y8nC_ 100.0 21 PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme 5 c2f3oB_ 100.0 24 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 6 c1hk8A_ 99.5 13 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 7 d1hk8a_ 99.5 13 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 8 c1xjeA_ 78.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex 9 c3hnfA_ 70.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp 10 c2cvuA_ 68.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i 11 c3gr1A_ 66.1 22 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 12 c3at7B_ 63.6 14 PDB header:structural protein Chain: B: PDB Molecule:alginate-binding flagellin; PDBTitle: crystal structure of bacterial cell-surface alginate-binding protein2 algp7 13 c2wghA_ 61.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg. 14 c1fs9A_ 52.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex 15 d1fs7a_ 52.0 14 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 16 d1dq3a4 48.8 17 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 17 c3gr0D_ 42.5 25 PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362) 18 d1jvaa3 39.8 16 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 19 c2jobA_ 37.7 19 PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site 20 d1u5tb1 37.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 21 d2i15a1 not modelled 31.1 34 Fold:MG296-like Superfamily:MG296-like Family:MG296-like 22 c3r1rB_ not modelled 31.0 16 PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli 23 d1ztda1 not modelled 28.4 27 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:PF0609-like 24 c2ejeA_ not modelled 22.6 15 PDB header:transcription Chain: A: PDB Molecule:general transcription factor ii-i; PDBTitle: solution structure of rsgi ruh-071, a gtf2i domain in human2 cdna 25 c1pemA_ not modelled 20.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium 26 d1uj8a1 not modelled 18.3 17 Fold:Another 3-helical bundle Superfamily:IscX-like Family:IscX-like 27 c3pcsB_ not modelled 16.9 19 PDB header:protein transport/transferase Chain: B: PDB Molecule:espg; PDBTitle: structure of espg-pak2 autoinhibitory ialpha3 helix complex 28 d2bgxa1 not modelled 16.8 17 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 29 d1aisa1 not modelled 16.4 27 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 30 d1jwoa_ not modelled 16.4 28 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 31 d1rpya_ not modelled 16.3 28 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 32 d1v5ra1 not modelled 16.1 33 Fold:N domain of copper amine oxidase-like Superfamily:GAS2 domain-like Family:GAS2 domain 33 c3knyA_ not modelled 16.1 10 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein bt_3535; PDBTitle: crystal structure of a two domain protein with unknown function2 (bt_3535) from bacteroides thetaiotaomicron vpi-5482 at 2.60 a3 resolution 34 c2a7oA_ not modelled 16.1 23 PDB header:transcription Chain: A: PDB Molecule:huntingtin interacting protein b; PDBTitle: solution structure of the hset2/hypb sri domain 35 c3uo9B_ not modelled 16.0 17 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes 36 d1nh2a1 not modelled 15.8 17 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 37 d1nh2a2 not modelled 15.8 36 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 38 c2q01A_ not modelled 15.7 19 PDB header:isomerase Chain: A: PDB Molecule:uronate isomerase; PDBTitle: crystal structure of glucuronate isomerase from caulobacter crescentus 39 c1r8jB_ not modelled 15.3 24 PDB header:circadian clock protein Chain: B: PDB Molecule:kaia; PDBTitle: crystal structure of circadian clock protein kaia from2 synechococcus elongatus 40 d1qnaa1 not modelled 14.9 17 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 41 d1vioa2 not modelled 14.7 28 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 42 d1aisa2 not modelled 14.5 42 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 43 d1mp9a1 not modelled 14.2 29 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 44 d1qnaa2 not modelled 14.1 36 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 45 d1k9aa2 not modelled 14.1 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 46 c2khvA_ not modelled 13.8 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of protein nmul_a0922 from2 nitrosospira multiformis. northeast structural genomics3 consortium target nmr38b. 47 d1cdwa1 not modelled 13.2 17 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 48 d1fp3a_ not modelled 13.0 8 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:N-acylglucosamine (NAG) epimerase 49 d1rlra2 not modelled 12.9 18 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 50 d1mp9a2 not modelled 12.6 42 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 51 d1w7pd1 not modelled 12.5 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 52 c3d36B_ not modelled 12.1 13 PDB header:transferase/transferase inhibitor Chain: B: PDB Molecule:sporulation kinase b; PDBTitle: how to switch off a histidine kinase: crystal structure of2 geobacillus stearothermophilus kinb with the inhibitor sda 53 d1i3za_ not modelled 11.4 25 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 54 c2dlzA_ not modelled 11.4 33 PDB header:signaling protein Chain: A: PDB Molecule:protein vav-2; PDBTitle: solution structure of the sh2 domain of human protein vav-2 55 c2ci8A_ not modelled 10.7 18 PDB header:translation Chain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: sh2 domain of human nck1 adaptor protein - uncomplexed 56 d1l8na1 not modelled 10.6 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 57 c2bh7A_ not modelled 10.6 14 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms 58 d1bf5a3 not modelled 10.6 12 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 59 c1x6cA_ not modelled 10.4 22 PDB header:signaling protein Chain: A: PDB Molecule:tyrosine-protein phosphatase, non-receptor type PDBTitle: solution structures of the sh2 domain of human protein-2 tyrosine phosphatase shp-1 60 c3d2rB_ not modelled 10.4 17 PDB header:transferase Chain: B: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 4; PDBTitle: crystal structure of pyruvate dehydrogenase kinase isoform 4 in2 complex with adp 61 c3gd5D_ not modelled 10.4 19 PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from gloeobacter2 violaceus 62 d1etea_ not modelled 10.3 16 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 63 d1qada_ not modelled 10.2 24 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 64 d1yqea1 not modelled 10.1 8 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 65 d1ayaa_ not modelled 10.1 16 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 66 d1p9ka_ not modelled 10.1 21 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 67 c2q82A_ not modelled 9.9 35 PDB header:structural protein Chain: A: PDB Molecule:core protein p7; PDBTitle: crystal structure of core protein p7 from pseudomonas phage2 phi12. northeast structural genomics target oc1 68 d1yuaa2 not modelled 9.9 11 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment 69 c3cekA_ not modelled 9.7 13 PDB header:transferase Chain: A: PDB Molecule:dual specificity protein kinase ttk; PDBTitle: crystal structure of human dual specificity protein kinase (ttk) 70 d1xlya_ not modelled 9.4 33 Fold:RNA-binding protein She2p Superfamily:RNA-binding protein She2p Family:RNA-binding protein She2p 71 d2nlua1 not modelled 9.4 39 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:PWWP domain 72 c3hp7A_ not modelled 9.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 73 c3gebC_ not modelled 9.3 22 PDB header:hydrolase Chain: C: PDB Molecule:eyes absent homolog 2; PDBTitle: crystal structure of edeya2 74 d1cdwa2 not modelled 9.3 25 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 75 c2hx6A_ not modelled 9.3 14 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 76 c3vjjA_ not modelled 9.3 23 PDB header:viral protein Chain: A: PDB Molecule:p9-1; PDBTitle: crystal structure analysis of the p9-1 77 d1fhsa_ not modelled 9.0 24 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 78 d1a81e1 not modelled 9.0 18 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 79 d1a81e2 not modelled 9.0 9 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 80 d2oq1a1 not modelled 8.8 24 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 81 d1f2fa_ not modelled 8.8 12 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 82 d1l1la_ not modelled 8.7 9 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:B12-dependent (class II) ribonucleotide reductase 83 c3gxxB_ not modelled 8.7 33 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b 84 c2pmzV_ not modelled 8.7 12 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 85 d1v0ea2 not modelled 8.6 18 Fold:Triple-stranded beta-helix Superfamily:Phage fibre proteins Family:Endo-alpha-sialidase 86 d1jyra_ not modelled 8.5 25 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 87 d1h41a1 not modelled 8.5 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 88 d1luia_ not modelled 8.5 11 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 89 d2oq1a2 not modelled 8.4 11 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 90 c3ajfA_ not modelled 8.4 39 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: structural insigths into dsrna binding and rna silencing suppression2 by ns3 protein of rice hoja blanca tenuivirus 91 d1iruc_ not modelled 8.4 20 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 92 d1dwka2 not modelled 8.4 21 Fold:Cyanase C-terminal domain Superfamily:Cyanase C-terminal domain Family:Cyanase C-terminal domain 93 d1qcfa2 not modelled 8.4 12 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 94 c2dm0A_ not modelled 8.4 18 PDB header:transferase Chain: A: PDB Molecule:tyrosine-protein kinase txk; PDBTitle: solution structure of the sh2 domain of human tyrosine-2 protein kinase txk 95 d1rjaa_ not modelled 8.4 19 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 96 d1dzfa2 not modelled 8.3 16 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 97 c2vpmB_ not modelled 8.2 6 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 98 c3jvdA_ not modelled 8.1 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum 99 d1duvg1 not modelled 8.0 16 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase