Emaill.a.kelley@imperial.ac.uk
DescriptionP32108
DateThu Jan 5 11:49:09 GMT 2012
Unique Job IDd1c1ee37a5d5d6e4

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c2e76H_



46.4 30 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
2c2e74H_



46.4 30 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
3c2e75H_



46.4 30 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
4c1u0iA_



42.4 42 PDB header:de novo protein
Chain: A: PDB Molecule:iaal-e3;
PDBTitle: iaal-e3/k3 heterodimer
5d2e74h1



41.9 30 Fold:Single transmembrane helix
Superfamily:PetN subunit of the cytochrome b6f complex
Family:PetN subunit of the cytochrome b6f complex
6c1ce0B_



37.8 29 PDB header:hiv-1 envelope protein
Chain: B: PDB Molecule:protein (leucine zipper model h38-p1);
PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model
7c3he5A_



37.6 26 PDB header:de novo protein
Chain: A: PDB Molecule:synzip1;
PDBTitle: heterospecific coiled-coil pair synzip2:synzip1
8c3g9rF_



37.5 33 PDB header:viral protein
Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein
PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation
9c3lt7D_



36.7 32 PDB header:cell adhesion
Chain: D: PDB Molecule:adhesin yada;
PDBTitle: a transition from strong right-handed to canonical left-handed2 supercoiling in a conserved coiled coil segment of trimeric3 autotransporter adhesins - the m3 mutant structure
10c1u2uA_



36.3 33 PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper
11c1vf5H_



33.9 30 PDB header:photosynthesis
Chain: H: PDB Molecule:protein pet n;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
12c2lf0A_



32.8 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yibl;
PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scatting, nesg4 target sfr339/ocsp target sf3636
13c3ci9B_



32.5 30 PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
14c2zt9H_



32.2 43 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
15c1hf9B_



31.3 19 PDB header:atpase inhibitor
Chain: B: PDB Molecule:atpase inhibitor (mitochondrial);
PDBTitle: c-terminal coiled-coil domain from bovine if1
16c1vf5U_



30.7 30 PDB header:photosynthesis
Chain: U: PDB Molecule:protein pet n;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
17c1aq5C_



28.8 23 PDB header:coiled-coil
Chain: C: PDB Molecule:cartilage matrix protein;
PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures
18d1v54m_



27.9 25 Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
19c2y69Z_



26.9 25 PDB header:electron transport
Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen
20c2d2cH_



26.5 30 PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit viii;
PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus
21c2d2cU_



not modelled 26.5 30 PDB header:photosynthesis
Chain: U: PDB Molecule:cytochrome b6-f complex subunit viii;
PDBTitle: crystal structure of cytochrome b6f complex with dbmib from2 m. laminosus
22c2ke4A_



not modelled 25.7 12 PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
23c3m9hB_



not modelled 23.9 24 PDB header:chaperone
Chain: B: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain of the2 mycobacterium tuberculosis proteasomal atpase mpa
24c2qa7B_



not modelled 23.6 27 PDB header:actin binding
Chain: B: PDB Molecule:huntingtin-interacting protein 1;
PDBTitle: crystal structure of huntingtin-interacting protein 12 (hip1) coiled-coil domain with a basic surface suitable3 for hip-protein interactor (hippi)
25c3rylB_



not modelled 22.3 42 PDB header:protein binding
Chain: B: PDB Molecule:protein vpa1370;
PDBTitle: dimerization domain of vibrio parahemolyticus vopl
26d2gr7a1



not modelled 19.7 20 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
27c2gr7C_



not modelled 19.7 20 PDB header:membrane protein
Chain: C: PDB Molecule:adhesin;
PDBTitle: hia 992-1098
28c3p8cE_



not modelled 19.5 21 PDB header:protein binding
Chain: E: PDB Molecule:probable protein brick1;
PDBTitle: structure and control of the actin regulatory wave complex
29c1hwtC_



not modelled 18.4 26 PDB header:gene regulation/dna
Chain: C: PDB Molecule:protein (heme activator protein);
PDBTitle: structure of a hap1/dna complex reveals dramatically2 asymmetric dna binding by a homodimeric protein
30c1ij2C_



not modelled 17.7 27 PDB header:transcription
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position
31c3k7zA_



not modelled 17.4 27 PDB header:dna binding protein
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
32c1rb6C_



not modelled 17.4 27 PDB header:dna binding protein
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form
33c1swiA_



not modelled 17.4 27 PDB header:leucine zipper
Chain: A: PDB Molecule:gcn4p1;
PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene
34c1rb1A_



not modelled 17.4 27 PDB header:dna binding protein
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
35c1rb1B_



not modelled 17.4 27 PDB header:dna binding protein
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
36c3k7zB_



not modelled 17.4 27 PDB header:dna binding protein
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution
37d1vl2a2



not modelled 16.8 21 Fold:Argininosuccinate synthetase, C-terminal domain
Superfamily:Argininosuccinate synthetase, C-terminal domain
Family:Argininosuccinate synthetase, C-terminal domain
38c1ij3C_



not modelled 16.6 27 PDB header:transcription
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position
39c1ij3B_



not modelled 16.6 27 PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position
40d1slqa_



not modelled 16.2 8 Fold:VP4 membrane interaction domain
Superfamily:VP4 membrane interaction domain
Family:VP4 membrane interaction domain
41d1ioka2



not modelled 15.9 32 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
42d1ta8a_



not modelled 15.9 18 Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
43c1ztaA_



not modelled 15.8 29 PDB header:dna-binding motif
Chain: A: PDB Molecule:leucine zipper monomer;
PDBTitle: the solution structure of a leucine-zipper motif peptide
44c1ij2B_



not modelled 15.6 27 PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position
45c3pn1A_



not modelled 15.4 21 PDB header:ligase/ligase inhibitor
Chain: A: PDB Molecule:dna ligase;
PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo
46c2ergA_



not modelled 14.1 21 PDB header:transcription activator/dna
Chain: A: PDB Molecule:regulatory protein leu3;
PDBTitle: crystal structure of leu3 dna-binding domain with a single2 h50c mutation complexed with a 15mer dna duplex
47c2xzrA_



not modelled 12.3 13 PDB header:cell adhesion
Chain: A: PDB Molecule:immunoglobulin-binding protein eibd;
PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors
48c2yy0D_



not modelled 12.1 11 PDB header:transcription
Chain: D: PDB Molecule:c-myc-binding protein;
PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens
49c2zt9E_



not modelled 12.0 27 PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
50c1kddC_



not modelled 12.0 25 PDB header:de novo protein
Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l
51d1b04a_



not modelled 12.0 24 Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
52c1kddA_



not modelled 11.7 25 PDB header:de novo protein
Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l
53c1kddF_



not modelled 11.7 25 PDB header:de novo protein
Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l
54c1zauA_



not modelled 11.1 30 PDB header:ligase
Chain: A: PDB Molecule:dna ligase;
PDBTitle: adenylation domain of nad+ dependent dna ligase from2 m.tuberculosis
55c2owoA_



not modelled 11.1 21 PDB header:ligase/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate
56d1uuja_



not modelled 10.6 25 Fold:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
Superfamily:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
Family:Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
57c3hroA_



not modelled 10.2 33 PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential (trp) channel
PDBTitle: crystal structure of a c-terminal coiled coil domain of2 transient receptor potential (trp) channel subfamily p3 member 2 (trpp2, polycystic kidney disease 2)
58c1kd9A_



not modelled 10.0 31 PDB header:de novo protein
Chain: A: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l
59c1kd9F_



not modelled 10.0 31 PDB header:de novo protein
Chain: F: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l
60c1kd9C_



not modelled 10.0 31 PDB header:de novo protein
Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16l;
PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16l base-d12la16l
61c3gw6F_



not modelled 10.0 27 PDB header:chaperone
Chain: F: PDB Molecule:endo-n-acetylneuraminidase;
PDBTitle: intramolecular chaperone
62c3h5fB_



not modelled 9.9 43 PDB header:de novo protein
Chain: B: PDB Molecule:coil ser l16l-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
63c3h5fC_



not modelled 9.9 43 PDB header:de novo protein
Chain: C: PDB Molecule:coil ser l16l-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
64c3h5gA_



not modelled 9.9 43 PDB header:de novo protein
Chain: A: PDB Molecule:coil ser l16d-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
65c3h5gB_



not modelled 9.9 43 PDB header:de novo protein
Chain: B: PDB Molecule:coil ser l16d-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
66c3h5gC_



not modelled 9.9 43 PDB header:de novo protein
Chain: C: PDB Molecule:coil ser l16d-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
67c3h5fA_



not modelled 9.9 43 PDB header:de novo protein
Chain: A: PDB Molecule:coil ser l16l-pen;
PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides.
68c2xv5A_



not modelled 9.9 13 PDB header:structural protein
Chain: A: PDB Molecule:lamin-a/c;
PDBTitle: human lamin a coil 2b fragment
69c2p4vA_



not modelled 9.8 21 PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor greb;
PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution
70c1fmhA_



not modelled 9.6 28 PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper
71c1t3jA_



not modelled 9.6 38 PDB header:membrane protein
Chain: A: PDB Molecule:mitofusin 1;
PDBTitle: mitofusin domain hr2 v686m/i708m mutant
72c3jslA_



not modelled 9.5 21 PDB header:ligase
Chain: A: PDB Molecule:dna ligase;
PDBTitle: crystal structure of the adenylation domain of nad+-2 dependent dna ligase from staphylococcus aureus
73c1ci6B_



not modelled 9.1 17 PDB header:transcription
Chain: B: PDB Molecule:transcription factor c/ebp beta;
PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer
74d1lrza1



not modelled 8.8 14 Fold:Long alpha-hairpin
Superfamily:tRNA-binding arm
Family:Methicillin resistance protein FemA probable tRNA-binding arm
75d1oela2



not modelled 8.7 27 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
76c1grjA_



not modelled 8.4 21 PDB header:transcription regulation
Chain: A: PDB Molecule:grea protein;
PDBTitle: grea transcript cleavage factor from escherichia coli
77c3swfA_



not modelled 8.3 26 PDB header:transport protein
Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1;
PDBTitle: cnga1 621-690 containing clz domain
78c2o7hF_



not modelled 8.1 22 PDB header:transcription
Chain: F: PDB Molecule:general control protein gcn4;
PDBTitle: crystal structure of trimeric coiled coil gcn4 leucine zipper
79c2dl1A_



not modelled 8.1 15 PDB header:protein transport
Chain: A: PDB Molecule:spartin;
PDBTitle: solution structure of the mit domain from human spartin
80c2rkhA_



not modelled 7.4 38 PDB header:transcription
Chain: A: PDB Molecule:putative apha-like transcription factor;
PDBTitle: crystal structure of a putative apha-like transcription factor2 (zp_00208345.1) from magnetospirillum magnetotacticum ms-1 at 2.00 a3 resolution
81d1vlia2



not modelled 7.4 21 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
82c3hlsE_



not modelled 7.3 18 PDB header:signaling protein
Chain: E: PDB Molecule:guanylate cyclase soluble subunit beta-1;
PDBTitle: crystal structure of the signaling helix coiled-coil doimain2 of the beta-1 subunit of the soluble guanylyl cyclase
83c1gk6B_



not modelled 7.2 17 PDB header:vimentin
Chain: B: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b)
84d1seta1



not modelled 7.1 0 Fold:Long alpha-hairpin
Superfamily:tRNA-binding arm
Family:Seryl-tRNA synthetase (SerRS)
85c1yjgE_



not modelled 7.1 14 PDB header:immune system
Chain: E: PDB Molecule:surface protein vspa;
PDBTitle: variable small protein 1 of borrelia turicatae (vspa or vsp1)
86d2zdra2



not modelled 7.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
87c2akfA_



not modelled 6.9 36 PDB header:protein binding
Chain: A: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
88c2akfB_



not modelled 6.9 36 PDB header:protein binding
Chain: B: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
89c2akfC_



not modelled 6.9 36 PDB header:protein binding
Chain: C: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
90c3nmdA_



not modelled 6.9 21 PDB header:transferase
Chain: A: PDB Molecule:cgmp dependent protein kinase;
PDBTitle: crystal structure of the leucine zipper domain of cgmp dependent2 protein kinase i beta
91c2wl2B_



not modelled 6.8 19 PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8
92d1v9pa3



not modelled 6.7 24 Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
93c3o3nA_



not modelled 6.6 21 PDB header:lyase
Chain: A: PDB Molecule:alpha-subunit 2-hydroxyisocaproyl-coa dehydratase;
PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa
94c2w6bA_



not modelled 6.6 25 PDB header:signaling protein
Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 7;
PDBTitle: crystal structure of the trimeric beta-pix coiled-coil2 domain
95d1sjpa2



not modelled 6.5 18 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
96d1kida_



not modelled 6.5 32 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
97c3m0dC_



not modelled 6.5 26 PDB header:signaling protein
Chain: C: PDB Molecule:tnf receptor-associated factor 1;
PDBTitle: crystal structure of the traf1:traf2:ciap2 complex
98c2pnvA_



not modelled 6.5 23 PDB header:membrane protein
Chain: A: PDB Molecule:small conductance calcium-activated potassium
PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus
99c2zfcB_



not modelled 6.4 25 PDB header:viral protein
Chain: B: PDB Molecule:hiv-1 gp41;
PDBTitle: x-ray crystal structure of an engineered n-terminal hiv-12 gp41 trimer with enhanced stability and potency