Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP52106
DateThu Jan 5 12:05:21 GMT 2012
Unique Job IDd0f8ac4c11cea06b

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3c3wB_
Top template information
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
Confidence and coverage
Confidence:100.0% Coverage: 93%
201 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MFNEVHSIHGHTLLLITKSSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM
Secondary structure 























SS confidence 



























































Disorder  ???????
?


















































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   .........70.........80.........90.........100.........110.........120
Sequence  MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYSMEDQERVVNG
Secondary structure 






















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   .........130.........140.........150.........160.........170.........180
Sequence  LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL
Secondary structure 























SS confidence 



























































Disorder 






















??????????????






















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   .........190.........200.........210......
Sequence  FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR
Secondary structure 









SS confidence 



































Disorder 
































???
Disorder confidence 



































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3c3w chain B

3D model

Region: 12 - 213
Aligned: 201
Modelled: 202
Confidence: 100.0%
Identity: 20%
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr

Phyre2

PDB 1zn2 chain A

3D model

Region: 9 - 213
Aligned: 196
Modelled: 204
Confidence: 100.0%
Identity: 19%
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr

Phyre2

PDB 1rnl chain A

3D model

Region: 9 - 213
Aligned: 193
Modelled: 205
Confidence: 100.0%
Identity: 24%
PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl

Phyre2

PDB 3kln chain C

3D model

Region: 9 - 213
Aligned: 205
Modelled: 205
Confidence: 100.0%
Identity: 32%
PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst

Phyre2

PDB 1kgs chain A

3D model

Region: 12 - 207
Aligned: 195
Modelled: 196
Confidence: 99.9%
Identity: 14%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima

Phyre2

PDB 3q9s chain A

3D model

Region: 11 - 207
Aligned: 195
Modelled: 197
Confidence: 99.9%
Identity: 17%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans

Phyre2

PDB 1p2f chain A

3D model

Region: 9 - 203
Aligned: 193
Modelled: 193
Confidence: 99.9%
Identity: 14%
PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog

Phyre2

PDB 1ys7 chain B

3D model

Region: 12 - 202
Aligned: 190
Modelled: 191
Confidence: 99.9%
Identity: 15%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+

Phyre2

PDB 2oqr chain A

3D model

Region: 12 - 203
Aligned: 190
Modelled: 192
Confidence: 99.9%
Identity: 13%
PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis

Phyre2

PDB 2gwr chain A

3D model

Region: 9 - 203
Aligned: 193
Modelled: 194
Confidence: 99.8%
Identity: 15%
PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis

Phyre2

PDB 3r0j chain A

3D model

Region: 12 - 203
Aligned: 190
Modelled: 192
Confidence: 99.8%
Identity: 17%
PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis

Phyre2

PDB 2hqr chain A

3D model

Region: 12 - 202
Aligned: 186
Modelled: 191
Confidence: 99.8%
Identity: 10%
PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism

Phyre2

PDB 3szt chain B

3D model

Region: 149 - 213
Aligned: 65
Modelled: 65
Confidence: 99.7%
Identity: 31%
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone

Phyre2

PDB 1s8n chain A

3D model

Region: 11 - 199
Aligned: 184
Modelled: 186
Confidence: 99.7%
Identity: 10%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 1h0m chain D

3D model

Region: 145 - 213
Aligned: 69
Modelled: 69
Confidence: 99.7%
Identity: 20%
PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna

Phyre2

PDB 2q0o chain A

3D model

Region: 147 - 213
Aligned: 67
Modelled: 67
Confidence: 99.7%
Identity: 22%
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing

Phyre2

PDB 3qp5 chain C

3D model

Region: 154 - 213
Aligned: 60
Modelled: 60
Confidence: 99.7%
Identity: 40%
PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)

Phyre2

PDB 1zlj chain E

3D model

Region: 151 - 213
Aligned: 63
Modelled: 63
Confidence: 99.6%
Identity: 33%
PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain

Phyre2

PDB 3clo chain C

3D model

Region: 153 - 213
Aligned: 61
Modelled: 60
Confidence: 99.6%
Identity: 43%
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution

Phyre2

PDB 1p4w chain A

3D model

Region: 148 - 213
Aligned: 66
Modelled: 66
Confidence: 99.6%
Identity: 21%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: C-terminal effector domain of the bipartite response regulators
Family: GerE-like (LuxR/UhpA family of transcriptional regulators)

Phyre2
1

c3c3wB_
2

c1zn2A_
3

c1rnlA_
4

c3klnC_
5

c1kgsA_
6

c3q9sA_
7

c1p2fA_
8

c1ys7B_
9

c2oqrA_
10

c2gwrA_
11

c3r0jA_
12

c2hqrA_
13

c3sztB_
14

d1s8na_
15

c1h0mD_
16

c2q0oA_
17

c3qp5C_
18

c1zljE_
19

c3cloC_
20

d1p4wa_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3c3wB_



100.0 20 PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
2c1zn2A_



100.0 19 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
3c1rnlA_



100.0 24 PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl
4c3klnC_



100.0 32 PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
5c1kgsA_



99.9 14 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
6c3q9sA_



99.9 17 PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans
7c1p2fA_



99.9 14 PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog
8c1ys7B_



99.9 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
9c2oqrA_



99.9 13 PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis
10c2gwrA_



99.8 15 PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis
11c3r0jA_



99.8 17 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
12c2hqrA_



99.8 10 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
13c3sztB_



99.7 31 PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
14d1s8na_



99.7 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
15c1h0mD_



99.7 20 PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna
16c2q0oA_



99.7 22 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
17c3qp5C_



99.7 40 PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
18c1zljE_



99.6 33 PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
19c3cloC_



99.6 43 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution
20d1p4wa_



99.6 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
21d1yioa1



not modelled 99.6 34 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
22c2krfB_



not modelled 99.6 35 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
23d1a04a1



not modelled 99.6 38 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
24d1fsea_



not modelled 99.6 42 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
25d1l3la1



not modelled 99.6 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
26c2rnjA_



not modelled 99.5 44 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: nmr structure of the s. aureus vrar dna binding domain
27c3eq2A_



not modelled 99.5 13 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb
28c1x3uA_



not modelled 99.5 33 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein fixj;
PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
29c2ayxA_



not modelled 99.5 8 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
30c3breA_



not modelled 99.5 15 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
31d1u0sy_



not modelled 99.5 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
32c1w25B_



not modelled 99.5 13 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
33c2rjnA_



not modelled 99.5 12 PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
34d1dz3a_



not modelled 99.5 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
35c3i5aA_



not modelled 99.5 16 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
36d1a04a2



not modelled 99.5 16 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
37c3rqiA_



not modelled 99.5 14 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein;
PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate
38d1dbwa_



not modelled 99.5 8 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
39c3cz5B_



not modelled 99.5 10 PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
40d1p2fa2



not modelled 99.5 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
41d1krwa_



not modelled 99.5 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
42c2jpcA_



not modelled 99.5 33 PDB header:dna binding protein
Chain: A: PDB Molecule:ssrb;
PDBTitle: ssrb dna binding protein
43c1a2oB_



not modelled 99.5 8 PDB header:bacterial chemotaxis
Chain: B: PDB Molecule:cheb methylesterase;
PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain
44c3b2nA_



not modelled 99.5 15 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
45d1jbea_



not modelled 99.5 7 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
46c3lteH_



not modelled 99.5 14 PDB header:transcription
Chain: H: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
47d2a9pa1



not modelled 99.4 12 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
48d1a2oa1



not modelled 99.4 8 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
49d1p6qa_



not modelled 99.4 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
50c3t8yA_



not modelled 99.4 8 PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
51d1zesa1



not modelled 99.4 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
52c2zwmA_



not modelled 99.4 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
53d1ys7a2



not modelled 99.4 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
54c3eulB_



not modelled 99.4 13 PDB header:transcription
Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional
PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
55d1peya_



not modelled 99.4 15 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
56c3gt7A_



not modelled 99.4 13 PDB header:hydrolase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus
57c2zayA_



not modelled 99.4 9 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans
58d1zh2a1



not modelled 99.4 15 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
59d2ayxa1



not modelled 99.4 8 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
60d1k66a_



not modelled 99.4 15 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
61d1ny5a1



not modelled 99.4 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
62d1w25a1



not modelled 99.4 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
63c3f6cB_



not modelled 99.4 18 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
64c1ny5A_



not modelled 99.4 9 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
65c3dzdA_



not modelled 99.4 8 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
66d1qkka_



not modelled 99.4 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
67c3khtA_



not modelled 99.4 9 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator from hahella chejuensis
68c2qzjC_



not modelled 99.4 12 PDB header:transcription
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
69d1mvoa_



not modelled 99.4 15 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
70c3hv2B_



not modelled 99.4 14 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
71d2pl1a1



not modelled 99.4 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
72c2jrlA_



not modelled 99.4 9 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
73d1kgsa2



not modelled 99.4 12 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
74c3nhzA_



not modelled 99.4 14 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
75c3cfyA_



not modelled 99.4 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
76c3cnbC_



not modelled 99.4 13 PDB header:dna binding protein
Chain: C: PDB Molecule:dna-binding response regulator, merr family;
PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h
77c3t6kB_



not modelled 99.4 15 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
78c3jteA_



not modelled 99.4 9 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
79c3hdgE_



not modelled 99.4 6 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
80c2qr3A_



not modelled 99.4 12 PDB header:transcription
Chain: A: PDB Molecule:two-component system response regulator;
PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
81d1yioa2



not modelled 99.4 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
82c3cu5B_



not modelled 99.4 10 PDB header:transcription regulator
Chain: B: PDB Molecule:two component transcriptional regulator, arac family;
PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg
83c3mmnA_



not modelled 99.4 9 PDB header:transferase
Chain: A: PDB Molecule:histidine kinase homolog;
PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
84d1xhfa1



not modelled 99.4 7 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
85d1zgza1



not modelled 99.4 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
86d1i3ca_



not modelled 99.4 16 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
87d2r25b1



not modelled 99.4 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
88d1dcfa_



not modelled 99.4 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Receiver domain of the ethylene receptor
89c3h1gA_



not modelled 99.3 11 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein chey homolog;
PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori
90c3cg4A_



not modelled 99.3 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like);
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
91c3a0rB_



not modelled 99.3 12 PDB header:transferase
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
92c3c3mA_



not modelled 99.3 14 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
93c3hdvB_



not modelled 99.3 9 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida
94d1heya_



not modelled 99.3 7 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
95c3grcD_



not modelled 99.3 9 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
96c2jk1A_



not modelled 99.3 11 PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
97d1mb3a_



not modelled 99.3 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
98c3snkA_



not modelled 99.3 7 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
99c3ilhA_



not modelled 99.3 12 PDB header:transcription regulator
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii
100c3hebB_



not modelled 99.3 12 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator receiver domain protein (chey);
PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum
101c3crnA_



not modelled 99.3 9 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
102c2qv0A_



not modelled 99.3 13 PDB header:transcription
Chain: A: PDB Molecule:protein mrke;
PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae
103c2qvgA_



not modelled 99.3 11 PDB header:transferase
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila
104d1w25a2



not modelled 99.3 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
105c3cg0A_



not modelled 99.3 13 PDB header:lyase
Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase
PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding
106c3gl9B_



not modelled 99.3 12 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator;
PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism
107c3i42A_



not modelled 99.3 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-
PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
108c3luaA_



not modelled 99.3 14 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum
109c3kcnA_



not modelled 99.3 12 PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
110c2nt3A_



not modelled 99.2 9 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator homolog;
PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant)
111c3hzhA_



not modelled 99.2 10 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis response regulator (chey-3);
PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi
112c2rdmB_



not modelled 99.2 8 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
113c3eqzB_



not modelled 99.2 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea
114c3nhmA_



not modelled 99.2 10 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from myxococcus xanthus
115c3lufB_



not modelled 99.2 11 PDB header:signaling protein
Chain: B: PDB Molecule:two-component system response regulator/ggdef
PDBTitle: structure of probable two-component system response2 regulator/ggdef domain protein
116c2qxyB_



not modelled 99.2 9 PDB header:transcription
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from thermotoga2 maritima
117c3m6mF_



not modelled 99.2 8 PDB header:lyase/transferase
Chain: F: PDB Molecule:sensory/regulatory protein rpfc;
PDBTitle: crystal structure of rpff complexed with rec domain of rpfc
118c3eodA_



not modelled 99.2 12 PDB header:signaling protein
Chain: A: PDB Molecule:protein hnr;
PDBTitle: crystal structure of n-terminal domain of e. coli rssb
119d1k68a_



not modelled 99.2 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
120c2j48A_



not modelled 99.2 18 PDB header:transferase
Chain: A: PDB Molecule:two-component sensor kinase;
PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0