Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	F	S	K	M	H	G	L	G	N	D	F	M	V	V	D	A	V	T	Q	N	V	F	F	S	P	E	L	I	R	R	L	A	D	R	H	L	G	V	G	F	D	Q	L	L	V	V	E	P	P	Y	D	P	E	L	D	F	H	Y
Secondary structure
SS confidence
Disorder		?	?																			?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	I	F	N	A	D	G	S	E	V	A	Q	C	G	N	G	A	R	C	F	A	R	F	V	R	L	K	G	L	T	N	K	R	D	I	R	V	S	T	A	N	G	R	M	V	L	T	V	T	D	D	D	L	V	R	V	N	M	G	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	N	F	E	P	S	A	V	P	F	R	A	N	K	A	E	K	T	Y	I	M	R	A	A	E	Q	T	I	L	C	G	V	V	S	M	G	N	P	H	C	V	I	Q	V	D	D	V	D	T	A	A	V	E	T	L	G	P	V	L	E
Secondary structure
SS confidence
Disorder			?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	H	E	R	F	P	E	R	A	N	I	G	F	M	Q	V	V	K	R	E	H	I	R	L	R	V	Y	E	R	G	A	G	E	T	Q	A	C	G	S	G	A	C	A	A	V	A	V	G	I	Q	Q	G	L	L	A	E	E	V	R	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Sequence		E	L	P	G	G	R	L	D	I	A	W	K	G	P	G	H	P	L	Y	M	T	G	P	A	V	H	V	Y	D	G	F	I	H	L
Secondary structure
SS confidence
Disorder																																			?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gkj chain A Region: 1 - 274 Aligned: 274 Modelled: 274 Confidence: 100.0% Identity: 77% PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase in complex2 with an irreversible inhibitor dl-azidap Phyre2 PDB 3ekm chain E Region: 1 - 274 Aligned: 273 Modelled: 274 Confidence: 100.0% Identity: 41% PDB header:isomerase Chain: E: PDB Molecule:diaminopimelate epimerase, chloroplastic; PDBTitle: crystal structure of diaminopimelate epimerase form2 arabidopsis thaliana in complex with irreversible inhibitor3 dl-azidap Phyre2 PDB 3fve chain A Region: 1 - 272 Aligned: 253 Modelled: 255 Confidence: 100.0% Identity: 31% PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase mycobacterium2 tuberculosis dapf Phyre2 PDB 2otn chain B Region: 1 - 274 Aligned: 266 Modelled: 274 Confidence: 100.0% Identity: 33% PDB header:isomerase Chain: B: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of the catalytically active form of diaminopimelate2 epimerase from bacillus anthracis Phyre2 PDB 3edn chain B Region: 3 - 274 Aligned: 260 Modelled: 272 Confidence: 100.0% Identity: 20% PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein, phzf family; PDBTitle: crystal structure of the bacillus anthracis phenazine2 biosynthesis protein, phzf family Phyre2 PDB 1qy9 chain B Region: 3 - 274 Aligned: 260 Modelled: 269 Confidence: 100.0% Identity: 17% PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ydde; PDBTitle: crystal structure of e. coli se-met protein ydde Phyre2 PDB 1ym5 chain A Region: 3 - 274 Aligned: 257 Modelled: 270 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical 32.6 kda protein in dap2-slt2 PDBTitle: crystal structure of yhi9, the yeast member of the2 phenazine biosynthesis phzf enzyme superfamily. Phyre2 PDB 1s7j chain A Region: 3 - 274 Aligned: 245 Modelled: 272 Confidence: 100.0% Identity: 14% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1u1w chain A Region: 3 - 274 Aligned: 254 Modelled: 267 Confidence: 100.0% Identity: 20% PDB header:isomerase, lyase Chain: A: PDB Molecule:phenazine biosynthesis protein phzf; PDBTitle: structure and function of phenazine-biosynthesis protein phzf from2 pseudomonas fluorescens 2-79 Phyre2 PDB 1u0k chain A Region: 3 - 273 Aligned: 257 Modelled: 271 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gene product pa4716; PDBTitle: the structure of a predicted epimerase pa4716 from pseudomonas2 aeruginosa Phyre2 PDB 2azp chain A Region: 1 - 274 Aligned: 273 Modelled: 274 Confidence: 100.0% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa1268; PDBTitle: crystal structure of pa1268 solved by sulfur sad Phyre2 PDB 2gke chain A domain 1 Region: 1 - 129 Aligned: 129 Modelled: 129 Confidence: 100.0% Identity: 81% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: Diaminopimelate epimerase Phyre2 PDB 1w62 chain B Region: 1 - 274 Aligned: 271 Modelled: 274 Confidence: 100.0% Identity: 15% PDB header:racemase Chain: B: PDB Molecule:b-cell mitogen; PDBTitle: proline racemase in complex with one molecule of pyrrole-2-2 carboxylic acid (hemi form) Phyre2 PDB 1tm0 chain A Region: 1 - 274 Aligned: 263 Modelled: 262 Confidence: 100.0% Identity: 17% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: Proline racemase Phyre2 PDB 2gke chain A domain 2 Region: 139 - 274 Aligned: 136 Modelled: 136 Confidence: 100.0% Identity: 75% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: Diaminopimelate epimerase Phyre2 PDB 1qy9 chain A domain 1 Region: 3 - 126 Aligned: 114 Modelled: 124 Confidence: 99.9% Identity: 21% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1xub chain A domain 1 Region: 3 - 125 Aligned: 112 Modelled: 123 Confidence: 99.9% Identity: 17% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1xub chain A domain 2 Region: 135 - 274 Aligned: 136 Modelled: 140 Confidence: 99.9% Identity: 20% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1u0k chain A domain 1 Region: 3 - 126 Aligned: 115 Modelled: 124 Confidence: 99.9% Identity: 18% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 PDB 1qy9 chain A domain 2 Region: 131 - 274 Aligned: 142 Modelled: 144 Confidence: 99.8% Identity: 15% Fold: Diaminopimelate epimerase-like Superfamily: Diaminopimelate epimerase-like Family: PhzC/PhzF-like Phyre2 1 c2gkjA_ 2 c3ekmE_ 3 c3fveA_ 4 c2otnB_ 5 c3ednB_ 6 c1qy9B_ 7 c1ym5A_ 8 d1s7ja_ 9 c1u1wA_ 10 c1u0kA_ 11 c2azpA_ 12 d2gkea1 13 c1w62B_ 14 d1tm0a_ 15 d2gkea2 16 d1qy9a1 17 d1xuba1 18 d1xuba2 19 d1u0ka1 20 d1qy9a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2gkjA_ 100.0 77 PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase in complex2 with an irreversible inhibitor dl-azidap 2 c3ekmE_ 100.0 41 PDB header:isomerase Chain: E: PDB Molecule:diaminopimelate epimerase, chloroplastic; PDBTitle: crystal structure of diaminopimelate epimerase form2 arabidopsis thaliana in complex with irreversible inhibitor3 dl-azidap 3 c3fveA_ 100.0 31 PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase mycobacterium2 tuberculosis dapf 4 c2otnB_ 100.0 33 PDB header:isomerase Chain: B: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of the catalytically active form of diaminopimelate2 epimerase from bacillus anthracis 5 c3ednB_ 100.0 20 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein, phzf family; PDBTitle: crystal structure of the bacillus anthracis phenazine2 biosynthesis protein, phzf family 6 c1qy9B_ 100.0 17 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ydde; PDBTitle: crystal structure of e. coli se-met protein ydde 7 c1ym5A_ 100.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical 32.6 kda protein in dap2-slt2 PDBTitle: crystal structure of yhi9, the yeast member of the2 phenazine biosynthesis phzf enzyme superfamily. 8 d1s7ja_ 100.0 14 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 9 c1u1wA_ 100.0 20 PDB header:isomerase, lyase Chain: A: PDB Molecule:phenazine biosynthesis protein phzf; PDBTitle: structure and function of phenazine-biosynthesis protein phzf from2 pseudomonas fluorescens 2-79 10 c1u0kA_ 100.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gene product pa4716; PDBTitle: the structure of a predicted epimerase pa4716 from pseudomonas2 aeruginosa 11 c2azpA_ 100.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa1268; PDBTitle: crystal structure of pa1268 solved by sulfur sad 12 d2gkea1 100.0 81 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Diaminopimelate epimerase 13 c1w62B_ 100.0 15 PDB header:racemase Chain: B: PDB Molecule:b-cell mitogen; PDBTitle: proline racemase in complex with one molecule of pyrrole-2-2 carboxylic acid (hemi form) 14 d1tm0a_ 100.0 17 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Proline racemase 15 d2gkea2 100.0 75 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:Diaminopimelate epimerase 16 d1qy9a1 99.9 21 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 17 d1xuba1 99.9 17 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 18 d1xuba2 99.9 20 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 19 d1u0ka1 99.9 18 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 20 d1qy9a2 99.8 15 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 21 d1u0ka2 not modelled 99.7 20 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PhzC/PhzF-like 22 c3g7kD_ not modelled 98.6 16 PDB header:isomerase Chain: D: PDB Molecule:3-methylitaconate isomerase; PDBTitle: crystal structure of methylitaconate-delta-isomerase 23 c2pw0A_ not modelled 98.4 20 PDB header:unknown function Chain: A: PDB Molecule:prpf methylaconitate isomerase; PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis 24 d2h9fa2 not modelled 96.6 21 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PA0793-like 25 d2h9fa1 not modelled 61.8 15 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PA0793-like 26 c3g12A_ not modelled 39.2 11 PDB header:lyase Chain: A: PDB Molecule:putative lactoylglutathione lyase; PDBTitle: crystal structure of a putative lactoylglutathione lyase2 from bdellovibrio bacteriovorus 27 c3ldgA_ not modelled 36.9 19 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein smu.472; PDBTitle: crystal structure of smu.472, a putative methyltransferase complexed2 with sah 28 c3sk1C_ not modelled 31.5 24 PDB header:griseoluteate-binding protein Chain: C: PDB Molecule:ehpr; PDBTitle: crystal structure of phenazine resistance protein ehpr from2 enterobacter agglomerans (erwinia herbicola, pantoea agglomerans)3 eh1087, apo form 29 c2l3bA_ not modelled 30.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of the bt_0084 lipoprotein from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr376 30 d1o9ga_ not modelled 29.6 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase AviRa 31 c2l7qA_ not modelled 27.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of conjugate transposon protein bvu_1572(27-2 141) from bacteroides vulgatus, northeast structural genomics3 consortium target bvr155 32 c3k0bA_ not modelled 26.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted n6-adenine-specific dna methylase; PDBTitle: crystal structure of a predicted n6-adenine-specific dna methylase2 from listeria monocytogenes str. 4b f2365 33 c1g38A_ not modelled 22.2 38 PDB header:transferase/dna Chain: A: PDB Molecule:modification methylase taqi; PDBTitle: adenine-specific methyltransferase m. taq i/dna complex 34 d2f8la1 not modelled 21.0 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N-6 DNA Methylase-like 35 d2ar0a1 not modelled 19.8 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N-6 DNA Methylase-like 36 d1c4qa_ not modelled 19.6 15 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 37 c3lkdB_ not modelled 19.0 38 PDB header:transferase Chain: B: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of the type i restriction-modification2 system methyltransferase subunit from streptococcus3 thermophilus, northeast structural genomics consortium4 target sur80 38 c3lduA_ not modelled 17.8 14 PDB header:transferase Chain: A: PDB Molecule:putative methylase; PDBTitle: the crystal structure of a possible methylase from2 clostridium difficile 630. 39 d2ih2a1 not modelled 17.7 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:DNA methylase TaqI, N-terminal domain 40 c2kjzA_ not modelled 17.0 10 PDB header:unknown function Chain: A: PDB Molecule:atc0852; PDBTitle: solution nmr structure of protein atc0852 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att2. 41 d1sr8a_ not modelled 16.4 19 Fold:CbiD-like Superfamily:CbiD-like Family:CbiD-like 42 c1aqjB_ not modelled 15.6 21 PDB header:methyltransferase Chain: B: PDB Molecule:adenine-n6-dna-methyltransferase taqi; PDBTitle: structure of adenine-n6-dna-methyltransferase taqi 43 d1r4pb_ not modelled 15.4 17 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 44 c3owvA_ not modelled 14.9 16 PDB header:hydrolase Chain: A: PDB Molecule:dna-entry nuclease; PDBTitle: structural insights into catalytic and substrate binding mechanisms of2 the strategic enda nuclease from streptococcus pneumoniae 45 c2waqG_ not modelled 14.6 25 PDB header:transcription Chain: G: PDB Molecule:dna-directed rna polymerase rpo8 subunit; PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase 46 d2okca1 not modelled 13.9 26 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N-6 DNA Methylase-like 47 c3fd5B_ not modelled 13.8 18 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp 48 c3khkA_ not modelled 13.6 22 PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei. 49 d1h6za2 not modelled 13.1 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 50 c3hvzB_ not modelled 12.9 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 51 c2xh3B_ not modelled 12.7 16 PDB header:hydrolase Chain: B: PDB Molecule:spd1 nuclease; PDBTitle: extracellular nuclease 52 c2kmmA_ not modelled 11.9 13 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 53 d1n2aa2 not modelled 11.3 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 54 c2xznC_ not modelled 10.7 12 PDB header:ribosome Chain: C: PDB Molecule:kh domain containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 55 c3p9nA_ not modelled 9.7 33 PDB header:transferase Chain: A: PDB Molecule:possible methyltransferase (methylase); PDBTitle: rv2966c of m. tuberculosis is a rsmd-like methyltransferase 56 c1wqaB_ not modelled 9.5 14 PDB header:isomerase Chain: B: PDB Molecule:phospho-sugar mutase; PDBTitle: crystal structure of pyrococcus horikoshii2 phosphomannomutase/phosphoglucomutase complexed with mg2+ 57 d1twua_ not modelled 9.1 16 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Hypothetical protein YycE 58 c3ghjA_ not modelled 9.0 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative integron gene cassette protein; PDBTitle: crystal structure from the mobile metagenome of halifax2 harbour sewage outfall: integron cassette protein hfx_cass4 59 c2ph0A_ not modelled 9.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia2 carotovora. nesg target ewr41. 60 d2hqva1 not modelled 8.9 13 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:ChuX-like 61 c3r6aB_ not modelled 8.8 12 PDB header:isomerase, lyase Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein (hypothetical protein2 mm_3218) from methanosarcina mazei. 62 c2zifB_ not modelled 8.6 21 PDB header:transferase Chain: B: PDB Molecule:putative modification methylase; PDBTitle: crystal structure of ttha0409, putative dna modification2 methylase from thermus thermophilus hb8- complexed with s-3 adenosyl-l-methionine 63 d1g60a_ not modelled 8.5 46 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Type II DNA methylase 64 c2oviA_ not modelled 7.9 17 PDB header:ligand binding protein, metal transport Chain: A: PDB Molecule:hypothetical protein chux; PDBTitle: structure of the heme binding protein chux 65 d1p3da1 not modelled 7.8 18 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 66 d2bosa_ not modelled 7.7 17 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 67 d1booa_ not modelled 7.5 31 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Type II DNA methylase 68 c2f7lA_ not modelled 7.5 18 PDB header:isomerase Chain: A: PDB Molecule:455aa long hypothetical phospho-sugar mutase; PDBTitle: crystal structure of sulfolobus tokodaii2 phosphomannomutase/phosphoglucomutase 69 c3m05A_ not modelled 7.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pepe_1480; PDBTitle: the crystal structure of a functionally unknown protein2 pepe_1480 from pediococcus pentosaceus atcc 25745 70 c3s1sA_ not modelled 7.3 20 PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi 71 d1wy7a1 not modelled 6.4 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Ta1320-like 72 d1m7va_ not modelled 6.3 18 Fold:Nitric oxide (NO) synthase oxygenase domain Superfamily:Nitric oxide (NO) synthase oxygenase domain Family:Nitric oxide (NO) synthase oxygenase domain 73 d1ne2a_ not modelled 6.3 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Ta1320-like 74 c2fkdK_ not modelled 6.2 30 PDB header:transcription regulator Chain: K: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of the c-terminal domain of bacteriophage2 186 repressor 75 d2hiya1 not modelled 6.2 18 Fold:SP0830-like Superfamily:SP0830-like Family:SP0830-like 76 c3gm5A_ not modelled 6.2 15 PDB header:isomerase Chain: A: PDB Molecule:lactoylglutathione lyase and related lyases; PDBTitle: crystal structure of a putative methylmalonyl-coenzyme a2 epimerase from thermoanaerobacter tengcongensis at 2.0 a3 resolution 77 c2h8bB_ not modelled 6.1 18 PDB header:hormone/growth factor Chain: B: PDB Molecule:insulin-like 3; PDBTitle: solution structure of insl3 78 d1j3aa_ not modelled 6.1 10 Fold:Ribosomal protein L13 Superfamily:Ribosomal protein L13 Family:Ribosomal protein L13 79 d1nhya2 not modelled 6.1 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 80 c1okgA_ not modelled 6.0 20 PDB header:transferase Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase; PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major 81 c1nw6A_ not modelled 6.0 43 PDB header:transferase Chain: A: PDB Molecule:modification methylase rsri; PDBTitle: structure of the beta class n6-adenine dna methyltransferase rsri2 bound to sinefungin 82 d2esra1 not modelled 5.9 40 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:YhhF-like 83 c1c4gB_ not modelled 5.6 12 PDB header:transferase Chain: B: PDB Molecule:protein (alpha-d-glucose 1-phosphate PDBTitle: phosphoglucomutase vanadate based transition state analog2 complex 84 d1hksa_ not modelled 5.5 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-shock transcription factor 85 d1xrka_ not modelled 5.5 7 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins 86 d1autl1 not modelled 5.4 43 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module 87 d1go4a_ not modelled 5.4 18 Fold:The spindle assembly checkpoint protein mad2 Superfamily:The spindle assembly checkpoint protein mad2 Family:The spindle assembly checkpoint protein mad2 88 c2f40A_ not modelled 5.3 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pf1455; PDBTitle: structure of a novel protein from backbone-centered nmr data and nmr-2 assisted structure prediction 89 d1xo8a_ not modelled 5.2 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0