Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	Q	F	N	P	V	D	H	P	H	R	R	Y	N	P	L	T	G	Q	W	I	L	V	S	P	H	R	A	K	R	P	W	Q	G	A	Q	E	T	P	A	K	Q	V	L	P	A	H	D	P	D	C	F	L	C	A	G	N	V	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																							?		?	?	?	?	?	?	?	?	?	?	?	?	?	?												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	T	G	D	K	N	P	D	Y	T	G	T	Y	V	F	T	N	D	F	A	A	L	M	S	D	T	P	D	A	P	E	S	H	D	P	L	M	R	C	Q	S	A	R	G	T	S	R	V	I	C	F	S	P	D	H	S	K	T	L	P
Secondary structure
SS confidence
Disorder		?	?		?	?																?			?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	L	S	V	A	A	L	T	E	I	V	K	T	W	Q	E	Q	T	A	E	L	G	K	T	Y	P	W	V	Q	V	F	E	N	K	G	A	A	M	G	C	S	N	P	H	P	H	G	Q	I	W	A	N	S	F	L	P	N	E	A	E
Secondary structure
SS confidence
Disorder																																						?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	E	D	R	L	Q	K	E	Y	F	A	E	Q	K	S	P	M	L	V	D	Y	V	Q	R	E	L	A	D	G	S	R	T	V	V	E	T	E	H	W	L	A	V	V	P	Y	W	A	A	W	P	F	E	T	L	L	L	P	K	A	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	L	R	I	T	D	L	T	D	A	Q	R	S	D	L	A	L	A	L	K	K	L	T	S	R	Y	D	N	L	F	Q	C	S	F	P	Y	S	M	G	W	H	G	A	P	F	N	G	E	E	N	Q	H	W	Q	L	H	A	H	F	Y
Secondary structure
SS confidence
Disorder																																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Sequence		P	P	L	L	R	S	A	T	V	R	K	F	M	V	G	Y	E	M	L	A	E	T	Q	R	D	L	T	A	E	Q	A	A	E	R	L	R	A	V	S	D	I	H	F	R	E	S	G	V
Secondary structure
SS confidence
Disorder									?																																?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1gup chain C Region: 2 - 345 Aligned: 344 Modelled: 344 Confidence: 100.0% Identity: 100% PDB header:nucleotidyltransferase Chain: C: PDB Molecule:galactose-1-phosphate uridylyltransferase; PDBTitle: structure of nucleotidyltransferase complexed with udp-2 galactose Phyre2 PDB 1zwj chain A Region: 10 - 339 Aligned: 288 Modelled: 310 Confidence: 100.0% Identity: 25% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative galactose-1-phosphate uridyl transferase; PDBTitle: x-ray structure of galt-like protein from arabidopsis thaliana2 at5g18200 Phyre2 PDB 1guq chain A domain 1 Region: 2 - 176 Aligned: 175 Modelled: 175 Confidence: 100.0% Identity: 99% Fold: HIT-like Superfamily: HIT-like Family: Hexose-1-phosphate uridylyltransferase Phyre2 PDB 1guq chain A domain 2 Region: 179 - 348 Aligned: 170 Modelled: 170 Confidence: 100.0% Identity: 100% Fold: HIT-like Superfamily: HIT-like Family: Hexose-1-phosphate uridylyltransferase Phyre2 PDB 1z84 chain A domain 1 Region: 10 - 175 Aligned: 146 Modelled: 153 Confidence: 100.0% Identity: 25% Fold: HIT-like Superfamily: HIT-like Family: Hexose-1-phosphate uridylyltransferase Phyre2 PDB 1z84 chain A domain 2 Region: 176 - 339 Aligned: 151 Modelled: 164 Confidence: 100.0% Identity: 24% Fold: HIT-like Superfamily: HIT-like Family: Hexose-1-phosphate uridylyltransferase Phyre2 PDB 3lb5 chain B Region: 193 - 337 Aligned: 129 Modelled: 145 Confidence: 99.9% Identity: 19% PDB header:cell cycle Chain: B: PDB Molecule:hit-like protein involved in cell-cycle regulation; PDBTitle: crystal structure of hit-like protein involved in cell-cycle2 regulation from bartonella henselae with unknown ligand Phyre2 PDB 3ano chain A Region: 193 - 345 Aligned: 137 Modelled: 153 Confidence: 99.9% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:ap-4-a phosphorylase; PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv Phyre2 PDB 3o0m chain B Region: 195 - 338 Aligned: 128 Modelled: 144 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zn-bound histidine triad family protein from2 mycobacterium smegmatis Phyre2 PDB 3l7x chain A Region: 194 - 337 Aligned: 133 Modelled: 144 Confidence: 99.9% Identity: 19% PDB header:cell cycle Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159 Phyre2 PDB 3ksv chain A Region: 193 - 337 Aligned: 135 Modelled: 145 Confidence: 99.9% Identity: 15% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: hypothetical protein from leishmania major Phyre2 PDB 3imi chain B Region: 194 - 338 Aligned: 137 Modelled: 145 Confidence: 99.9% Identity: 17% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hit family protein; PDBTitle: 2.01 angstrom resolution crystal structure of a hit family protein2 from bacillus anthracis str. 'ames ancestor' Phyre2 PDB 3p0t chain B Region: 196 - 337 Aligned: 126 Modelled: 142 Confidence: 99.9% Identity: 18% PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an hit-like protein from mycobacterium2 paratuberculosis Phyre2 PDB 1y23 chain A Region: 194 - 338 Aligned: 133 Modelled: 145 Confidence: 99.9% Identity: 18% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 2eo4 chain A Region: 196 - 338 Aligned: 131 Modelled: 143 Confidence: 99.9% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:150aa long hypothetical histidine triad nucleotide-binding PDBTitle: crystal structure of hypothetical histidine triad nucleotide-binding2 protein st2152 from sulfolobus tokodaii strain7 Phyre2 PDB 3n1t chain E Region: 195 - 302 Aligned: 104 Modelled: 108 Confidence: 99.9% Identity: 13% PDB header:hydrolase Chain: E: PDB Molecule:hit-like protein hint; PDBTitle: crystal structure of the h101a mutant echint gmp complex Phyre2 PDB 1xqu chain A Region: 194 - 307 Aligned: 110 Modelled: 111 Confidence: 99.9% Identity: 19% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 1xqu chain A Region: 194 - 307 Aligned: 110 Modelled: 111 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:hit family hydrolase; PDBTitle: hit family hydrolase from clostridium thermocellum cth-393 Phyre2 PDB 1rzy chain A Region: 194 - 302 Aligned: 104 Modelled: 109 Confidence: 99.9% Identity: 19% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 PDB 1fit chain A Region: 209 - 338 Aligned: 114 Modelled: 130 Confidence: 99.9% Identity: 21% Fold: HIT-like Superfamily: HIT-like Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins Phyre2 1 c1gupC_ 2 c1zwjA_ 3 d1guqa1 4 d1guqa2 5 d1z84a1 6 d1z84a2 7 c3lb5B_ 8 c3anoA_ 9 c3o0mB_ 10 c3l7xA_ 11 c3ksvA_ 12 c3imiB_ 13 c3p0tB_ 14 d1y23a_ 15 c2eo4A_ 16 c3n1tE_ 17 d1xqua_ 18 c1xquA_ 19 d1rzya_ 20 d1fita_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1gupC_ 100.0 100 PDB header:nucleotidyltransferase Chain: C: PDB Molecule:galactose-1-phosphate uridylyltransferase; PDBTitle: structure of nucleotidyltransferase complexed with udp-2 galactose 2 c1zwjA_ 100.0 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative galactose-1-phosphate uridyl transferase; PDBTitle: x-ray structure of galt-like protein from arabidopsis thaliana2 at5g18200 3 d1guqa1 100.0 99 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 4 d1guqa2 100.0 100 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 5 d1z84a1 100.0 25 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 6 d1z84a2 100.0 24 Fold:HIT-like Superfamily:HIT-like Family:Hexose-1-phosphate uridylyltransferase 7 c3lb5B_ 99.9 19 PDB header:cell cycle Chain: B: PDB Molecule:hit-like protein involved in cell-cycle regulation; PDBTitle: crystal structure of hit-like protein involved in cell-cycle2 regulation from bartonella henselae with unknown ligand 8 c3anoA_ 99.9 18 PDB header:transferase Chain: A: PDB Molecule:ap-4-a phosphorylase; PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv 9 c3o0mB_ 99.9 17 PDB header:hydrolase Chain: B: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zn-bound histidine triad family protein from2 mycobacterium smegmatis 10 c3l7xA_ 99.9 19 PDB header:cell cycle Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159 11 c3ksvA_ 99.9 15 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: hypothetical protein from leishmania major 12 c3imiB_ 99.9 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hit family protein; PDBTitle: 2.01 angstrom resolution crystal structure of a hit family protein2 from bacillus anthracis str. 'ames ancestor' 13 c3p0tB_ 99.9 18 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an hit-like protein from mycobacterium2 paratuberculosis 14 d1y23a_ 99.9 18 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 15 c2eo4A_ 99.9 18 PDB header:hydrolase Chain: A: PDB Molecule:150aa long hypothetical histidine triad nucleotide-binding PDBTitle: crystal structure of hypothetical histidine triad nucleotide-binding2 protein st2152 from sulfolobus tokodaii strain7 16 c3n1tE_ 99.9 13 PDB header:hydrolase Chain: E: PDB Molecule:hit-like protein hint; PDBTitle: crystal structure of the h101a mutant echint gmp complex 17 d1xqua_ 99.9 19 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 18 c1xquA_ 99.9 19 PDB header:hydrolase Chain: A: PDB Molecule:hit family hydrolase; PDBTitle: hit family hydrolase from clostridium thermocellum cth-393 19 d1rzya_ 99.9 19 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 20 d1fita_ 99.9 21 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 21 d1kpfa_ not modelled 99.9 18 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 22 d2oika1 not modelled 99.9 16 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 23 d1emsa1 not modelled 99.9 20 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 24 c3r6fA_ not modelled 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zinc-containing hit family protein from2 encephalitozoon cuniculi 25 c3oj7A_ not modelled 99.8 17 PDB header:metal binding protein Chain: A: PDB Molecule:putative histidine triad family protein; PDBTitle: crystal structure of a histidine triad family protein from entamoeba2 histolytica, bound to sulfate 26 c1emsB_ not modelled 99.8 19 PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein 27 c3i24B_ not modelled 99.6 15 PDB header:hydrolase Chain: B: PDB Molecule:hit family hydrolase; PDBTitle: crystal structure of a hit family hydrolase protein from2 vibrio fischeri. northeast structural genomics consortium3 target id vfr176 28 c3nrdB_ not modelled 99.6 16 PDB header:nucleotide binding protein Chain: B: PDB Molecule:histidine triad (hit) protein; PDBTitle: crystal structure of a histidine triad (hit) protein (smc02904) from2 sinorhizobium meliloti 1021 at 2.06 a resolution 29 c3i4sB_ not modelled 99.6 17 PDB header:hydrolase Chain: B: PDB Molecule:histidine triad protein; PDBTitle: crystal structure of histidine triad protein blr8122 from2 bradyrhizobium japonicum 30 c3oheA_ not modelled 99.6 17 PDB header:hydrolase Chain: A: PDB Molecule:histidine triad (hit) protein; PDBTitle: crystal structure of a histidine triad protein (maqu_1709) from2 marinobacter aquaeolei vt8 at 1.20 a resolution 31 d3bl9a1 not modelled 98.7 18 Fold:HIT-like Superfamily:HIT-like Family:mRNA decapping enzyme DcpS C-terminal domain 32 c3bl9B_ not modelled 98.6 18 PDB header:hydrolase Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps; PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493 33 d1vlra1 not modelled 98.4 21 Fold:HIT-like Superfamily:HIT-like Family:mRNA decapping enzyme DcpS C-terminal domain 34 c1xmlA_ not modelled 98.4 18 PDB header:chaperone Chain: A: PDB Molecule:heat shock-like protein 1; PDBTitle: structure of human dcps 35 d2pofa1 not modelled 85.2 14 Fold:HIT-like Superfamily:HIT-like Family:CDH-like 36 c1m6vE_ not modelled 34.9 13 PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase 37 d1vpra1 not modelled 22.3 60 Fold:Lipocalins Superfamily:Lipocalins Family:Dinoflagellate luciferase repeat 38 c3bddD_ not modelled 22.3 27 PDB header:transcription Chain: D: PDB Molecule:regulatory protein marr; PDBTitle: crystal structure of a putative multiple antibiotic-resistance2 repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a3 resolution 39 c3g2bA_ not modelled 19.5 28 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 40 c3ohmB_ not modelled 18.2 25 PDB header:signaling protein / hydrolase Chain: B: PDB Molecule:1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase PDBTitle: crystal structure of activated g alpha q bound to its effector2 phospholipase c beta 3 41 d1zaka2 not modelled 15.2 56 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 42 d1ukfa_ not modelled 14.7 19 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Avirulence protein Avrpph3 43 d1v58a1 not modelled 14.0 50 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 44 c1t3bA_ not modelled 13.8 38 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 45 d1qasa3 not modelled 13.5 27 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Mammalian PLC 46 c1v57A_ not modelled 13.0 50 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg; PDBTitle: crystal structure of the disulfide bond isomerase dsbg 47 c1jzdA_ not modelled 12.4 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 48 d2nvna1 not modelled 11.6 18 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:PMN2A0962/syc2379c-like 49 c2rodB_ not modelled 10.9 24 PDB header:apoptosis Chain: B: PDB Molecule:noxa; PDBTitle: solution structure of mcl-1 complexed with noxaa 50 d1rk4a2 not modelled 10.7 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 51 d2psba1 not modelled 10.6 33 Fold:YerB-like Superfamily:YerB-like Family:YerB-like 52 c2psbA_ not modelled 10.6 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yerb protein; PDBTitle: crystal structure of yerb protein from bacillus subtilis.2 northeast structural genomics target sr586 53 d1eeja1 not modelled 10.6 38 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 54 c1hyuA_ not modelled 10.5 25 PDB header:oxidoreductase Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: crystal structure of intact ahpf 55 c2hwtA_ not modelled 10.4 19 PDB header:replication, hydrolase Chain: A: PDB Molecule:putative replicase-associated protein; PDBTitle: nmr solution structure of the master-rep protein nuclease2 domain (2-95) from the faba bean necrotic yellows virus 56 d1ji8a_ not modelled 10.4 11 Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase Family:DsrC, the gamma subunit of dissimilatory sulfite reductase 57 d2v4jc1 not modelled 9.7 11 Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase Family:DsrC, the gamma subunit of dissimilatory sulfite reductase 58 d2drpa2 not modelled 9.6 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 59 c2elpA_ not modelled 9.0 22 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406 60 d1t3ba1 not modelled 8.4 38 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 61 c3ghaA_ not modelled 8.1 26 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond formation protein d; PDBTitle: crystal structure of etda-treated bdbd (reduced) 62 c3gv1A_ not modelled 8.1 63 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae 63 d1dqwa_ not modelled 8.0 20 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 64 d1ee8a1 not modelled 7.9 21 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 65 d1igna2 not modelled 7.9 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of rap1 66 d1k3sa_ not modelled 7.7 20 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 67 c3c6cA_ not modelled 7.7 42 PDB header:hydrolase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution 68 c3lotC_ not modelled 7.7 36 PDB header:structure genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution 69 c3e49A_ not modelled 7.1 36 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849 with a tim barrel fold; PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb4003 at 1.75 a resolution 70 c3e02A_ not modelled 6.9 33 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849; PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution 71 c3no5C_ not modelled 6.8 27 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf849 domain containing protein2 (reut_a1631) from ralstonia eutropha jmp134 at 1.90 a resolution 72 d2fbka1 not modelled 6.2 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 73 c3chvA_ not modelled 6.2 27 PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution 74 c3gn3B_ not modelled 6.2 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative protein-disulfide isomerase; PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution. 75 d1aisa1 not modelled 6.1 15 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 76 c3nznA_ not modelled 6.1 25 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1 77 c2fd4A_ not modelled 6.1 25 PDB header:ligase Chain: A: PDB Molecule:avirulence protein avrptob; PDBTitle: crystal structure of avrptob (436-553) 78 c3nqnB_ not modelled 6.0 47 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function. (dr_2006) from2 deinococcus radiodurans at 1.88 a resolution 79 c2ab3A_ not modelled 5.9 45 PDB header:rna binding protein Chain: A: PDB Molecule:znf29; PDBTitle: solution structures and characterization of hiv rre iib rna2 targeting zinc finger proteins 80 d1wika_ not modelled 5.9 11 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 81 d2csta_ not modelled 5.7 7 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 82 c3oopA_ not modelled 5.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2960 protein; PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262 83 d2fiya1 not modelled 5.6 22 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 84 c2y7eA_ not modelled 5.6 27 PDB header:lyase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form) 85 d1dl0a_ not modelled 5.5 50 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 86 c1dl0A_ not modelled 5.5 50 PDB header:toxin Chain: A: PDB Molecule:j-atracotoxin-hv1c; PDBTitle: solution structure of the insecticidal neurotoxin j-2 atracotoxin-hv1c 87 d1fm4a_ not modelled 5.5 16 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 88 c2hw0A_ not modelled 5.4 28 PDB header:hydrolase, replication Chain: A: PDB Molecule:replicase; PDBTitle: nmr solution structure of the nuclease domain from the2 replicator initiator protein from porcine circovirus pcv2 89 d1s6la1 not modelled 5.4 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 90 d1qnaa1 not modelled 5.4 12 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 91 c1zypB_ not modelled 5.3 25 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: synchrotron reduced form of the n-terminal domain of2 salmonella typhimurium ahpf 92 d1egoa_ not modelled 5.3 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 93 d1k0ma2 not modelled 5.1 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 94 d1t3ca_ not modelled 5.1 25 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Clostridium neurotoxins, catalytic domain 95 d1vr7a1 not modelled 5.1 16 Fold:S-adenosylmethionine decarboxylase Superfamily:S-adenosylmethionine decarboxylase Family:Bacterial S-adenosylmethionine decarboxylase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0