Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	S	K	I	N	Q	T	D	I	D	R	L	I	E	L	V	G	G	R	G	N	I	A	T	V	S	H	C	I	T	R	L	R	F	V	L	N	Q	P	A	N	A	R	P	K	E	I	E	Q	L	P	M	V	K	G	C	F	T	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																						?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	G	Q	F	Q	V	V	I	G	T	N	V	G	D	Y	Y	Q	A	L	I	A	S	T	G	Q	A	Q	V	D	K	E	Q	V	K	K	A	A	R	H	N	M	K	W	H	E	Q	L	I	S	H	F	A	V	I	F	F	P	L	L	P
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	L	I	S	G	G	L	I	L	G	F	R	N	V	I	G	D	L	P	M	S	N	G	Q	T	L	A	Q	M	Y	P	S	L	Q	T	I	Y	D	F	L	W	L	I	G	E	A	I	F	F	Y	L	P	V	G	I	C	W	S	A	V
Secondary structure
SS confidence
Disorder																?	?		?	?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	K	M	G	G	T	P	I	L	G	I	V	L	G	V	T	L	V	S	P	Q	L	M	N	A	Y	L	L	G	Q	Q	L	P	E	V	W	D	F	G	M	F	S	I	A	K	V	G	Y	Q	A	Q	V	I	P	A	L	L	A	G	L
Secondary structure
SS confidence
Disorder																													?	?	?			?	?										?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	L	G	V	I	E	T	R	L	K	R	I	V	P	D	Y	L	Y	L	V	V	V	P	V	C	S	L	I	L	A	V	F	L	A	H	A	L	I	G	P	F	G	R	M	I	G	D	G	V	A	F	A	V	R	H	L	M	T	G	S
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	A	P	I	G	A	A	L	F	G	F	L	Y	A	P	L	V	I	T	G	V	H	Q	T	T	L	A	I	D	L	Q	M	I	Q	S	M	G	G	T	P	V	W	P	L	I	A	L	S	N	I	A	Q	G	S	A	V	I	G	I	I
Secondary structure
SS confidence
Disorder		?																																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	S	S	R	K	H	N	E	R	E	I	S	V	P	A	A	I	S	A	W	L	G	V	T	E	P	A	M	Y	G	I	N	L	K	Y	R	F	P	M	L	C	A	M	I	G	S	G	L	A	G	L	L	C	G	L	N	G	V	M	A
Secondary structure
SS confidence
Disorder												?	?	?	?																																													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Sequence		N	G	I	G	V	G	G	L	P	G	I	L	S	I	Q	P	S	Y	W	Q	V	F	A	L	A	M	A	I	A	I	I	I	P	I	V	L	T	S	F	I	Y	Q	R	K	Y	R	L	G	T	L	D	I	V
Secondary structure
SS confidence
Disorder		?		?		?	?	?							?																														?		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qnq chain D Region: 92 - 471 Aligned: 379 Modelled: 380 Confidence: 100.0% Identity: 12% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 3ipj chain B Region: 3 - 95 Aligned: 92 Modelled: 93 Confidence: 99.9% Identity: 27% PDB header:transferase Chain: B: PDB Molecule:pts system, iiabc component; PDBTitle: the crystal structure of one domain of the pts system, iiabc component2 from clostridium difficile Phyre2 PDB 1iba chain A Region: 9 - 82 Aligned: 73 Modelled: 74 Confidence: 99.8% Identity: 22% PDB header:phoshphotransferase Chain: A: PDB Molecule:glucose permease; PDBTitle: glucose permease (domain iib), nmr, 11 structures Phyre2 PDB 3bp8 chain C domain 1 Region: 9 - 84 Aligned: 75 Modelled: 76 Confidence: 99.8% Identity: 21% Fold: Homing endonuclease-like Superfamily: Glucose permease domain IIB Family: Glucose permease domain IIB Phyre2 PDB 2voy chain B Region: 92 - 133 Aligned: 39 Modelled: 42 Confidence: 48.2% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus Phyre2 PDB 3sy6 chain A Region: 28 - 51 Aligned: 24 Modelled: 24 Confidence: 44.2% Identity: 21% PDB header:cell adhesion Chain: A: PDB Molecule:fimbrial protein bf1861; PDBTitle: crystal structure of a fimbrial protein bf1861 [bacteroides fragilis2 nctc 9343] (bf1861) from bacteroides fragilis nctc 9343 at 1.90 a3 resolution Phyre2 PDB 3t2l chain A Region: 28 - 52 Aligned: 25 Modelled: 25 Confidence: 39.2% Identity: 16% PDB header:cell adhesion Chain: A: PDB Molecule:putative cell adhesion protein; PDBTitle: crystal structure of a putative cell adhesion protein (bf1858) from2 bacteroides fragilis nctc 9343 at 2.33 a resolution Phyre2 PDB 2jan chain D Region: 7 - 49 Aligned: 42 Modelled: 43 Confidence: 29.3% Identity: 24% PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state Phyre2 PDB 2knc chain B Region: 436 - 471 Aligned: 36 Modelled: 36 Confidence: 25.7% Identity: 14% PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 2knc chain A Region: 439 - 471 Aligned: 33 Modelled: 33 Confidence: 25.4% Identity: 6% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 1ffg chain B Region: 45 - 74 Aligned: 30 Modelled: 30 Confidence: 23.5% Identity: 10% Fold: Ferredoxin-like Superfamily: CheY-binding domain of CheA Family: CheY-binding domain of CheA Phyre2 PDB 1a0o chain H Region: 45 - 74 Aligned: 30 Modelled: 30 Confidence: 22.6% Identity: 10% PDB header:chemotaxis Chain: H: PDB Molecule:chea; PDBTitle: chey-binding domain of chea in complex with chey Phyre2 PDB 2pmu chain D Region: 11 - 54 Aligned: 41 Modelled: 44 Confidence: 19.4% Identity: 15% PDB header:transcription regulation Chain: D: PDB Molecule:response regulator phop; PDBTitle: crystal structure of the dna-binding domain of phop Phyre2 PDB 2hqn chain A Region: 11 - 54 Aligned: 42 Modelled: 44 Confidence: 18.8% Identity: 12% PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism Phyre2 PDB 1m6y chain A Region: 4 - 67 Aligned: 61 Modelled: 64 Confidence: 17.3% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw; PDBTitle: crystal structure analysis of tm0872, a putative sam-2 dependent methyltransferase, complexed with sah Phyre2 PDB 1pu6 chain A Region: 2 - 54 Aligned: 53 Modelled: 53 Confidence: 17.0% Identity: 4% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: 3-Methyladenine DNA glycosylase III (MagIII) Phyre2 PDB 2bgw chain A domain 1 Region: 7 - 54 Aligned: 31 Modelled: 31 Confidence: 16.8% Identity: 23% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: Hef domain-like Phyre2 PDB 1vgg chain A Region: 58 - 84 Aligned: 27 Modelled: 27 Confidence: 16.4% Identity: 22% Fold: Ta1353-like Superfamily: Ta1353-like Family: Ta1353-like Phyre2 PDB 1kgs chain A domain 1 Region: 11 - 54 Aligned: 40 Modelled: 44 Confidence: 16.2% Identity: 15% Fold: DNA/RNA-binding 3-helical bundle Superfamily: C-terminal effector domain of the bipartite response regulators Family: PhoB-like Phyre2 PDB 1vr6 chain A domain 1 Region: 1 - 67 Aligned: 67 Modelled: 67 Confidence: 15.2% Identity: 13% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I DAHP synthetase Phyre2 1 c3qnqD_ 2 c3ipjB_ 3 c1ibaA_ 4 d3bp8c1 5 c2voyB_ 6 c3sy6A_ 7 c3t2lA_ 8 c2janD_ 9 c2kncB_ 10 c2kncA_ 11 d1ffgb_ 12 c1a0oH_ 13 c2pmuD_ 14 c2hqnA_ 15 c1m6yA_ 16 d1pu6a_ 17 d2bgwa1 18 d1vgga_ 19 d1kgsa1 20 d1vr6a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qnqD_ 100.0 12 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 2 c3ipjB_ 99.9 27 PDB header:transferase Chain: B: PDB Molecule:pts system, iiabc component; PDBTitle: the crystal structure of one domain of the pts system, iiabc component2 from clostridium difficile 3 c1ibaA_ 99.8 22 PDB header:phoshphotransferase Chain: A: PDB Molecule:glucose permease; PDBTitle: glucose permease (domain iib), nmr, 11 structures 4 d3bp8c1 99.8 21 Fold:Homing endonuclease-like Superfamily:Glucose permease domain IIB Family:Glucose permease domain IIB 5 c2voyB_ 48.2 18 PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 6 c3sy6A_ 44.2 21 PDB header:cell adhesion Chain: A: PDB Molecule:fimbrial protein bf1861; PDBTitle: crystal structure of a fimbrial protein bf1861 [bacteroides fragilis2 nctc 9343] (bf1861) from bacteroides fragilis nctc 9343 at 1.90 a3 resolution 7 c3t2lA_ 39.2 16 PDB header:cell adhesion Chain: A: PDB Molecule:putative cell adhesion protein; PDBTitle: crystal structure of a putative cell adhesion protein (bf1858) from2 bacteroides fragilis nctc 9343 at 2.33 a resolution 8 c2janD_ 29.3 24 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 9 c2kncB_ 25.7 14 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 10 c2kncA_ 25.4 6 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 11 d1ffgb_ 23.5 10 Fold:Ferredoxin-like Superfamily:CheY-binding domain of CheA Family:CheY-binding domain of CheA 12 c1a0oH_ 22.6 10 PDB header:chemotaxis Chain: H: PDB Molecule:chea; PDBTitle: chey-binding domain of chea in complex with chey 13 c2pmuD_ 19.4 15 PDB header:transcription regulation Chain: D: PDB Molecule:response regulator phop; PDBTitle: crystal structure of the dna-binding domain of phop 14 c2hqnA_ 18.8 12 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 15 c1m6yA_ 17.3 11 PDB header:transferase Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw; PDBTitle: crystal structure analysis of tm0872, a putative sam-2 dependent methyltransferase, complexed with sah 16 d1pu6a_ 17.0 4 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 17 d2bgwa1 16.8 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 18 d1vgga_ 16.4 22 Fold:Ta1353-like Superfamily:Ta1353-like Family:Ta1353-like 19 d1kgsa1 16.2 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 20 d1vr6a1 15.2 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 21 d1ciya1 not modelled 15.2 26 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 22 d2cyya2 not modelled 15.0 11 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 23 d1gxqa_ not modelled 14.9 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 24 d2gola1 not modelled 14.6 8 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 25 c3zqsB_ not modelled 14.6 11 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase fancl; PDBTitle: human fancl central domain 26 c1oy8A_ not modelled 14.6 17 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 27 c2wshC_ not modelled 14.5 10 PDB header:hydrolase Chain: C: PDB Molecule:endonuclease ii; PDBTitle: structure of bacteriophage t4 endoii e118a mutant 28 d1ji6a1 not modelled 12.9 26 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 29 c3k8hA_ not modelled 12.5 25 PDB header:membrane protein Chain: A: PDB Molecule:30klp; PDBTitle: structure of crystal form i of tp0453 30 d2cfua2 not modelled 12.3 21 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like 31 c1vbkA_ not modelled 11.8 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 32 c3ufiA_ not modelled 10.9 17 PDB header:cell adhesion Chain: A: PDB Molecule:hypothetical protein bacova_04980; PDBTitle: crystal structure of a hypothetical protein2 bacova_04980(zp_02067969.1) from bacteroides ovatus atcc 8483 at 2.183 a resolution 33 c2cfuA_ not modelled 10.8 21 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 34 d1qu3a1 not modelled 10.7 10 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 35 d2a5la1 not modelled 10.2 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 36 d1wlqc_ not modelled 10.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:DNA replication factor Cdt1 37 d1mwza_ not modelled 10.1 12 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 38 c3ibwA_ not modelled 10.0 8 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 39 c2jnhA_ not modelled 10.0 7 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 40 c2ekmC_ not modelled 9.8 30 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein st1511; PDBTitle: structure of st1219 protein from sulfolobus tokodaii 41 d2r7da2 not modelled 9.8 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RNB domain-like 42 c2gl0A_ not modelled 9.6 33 PDB header:transferase Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of pae2307 in complex with adenosine 43 d1fzda_ not modelled 9.6 22 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 44 d1l6na1 not modelled 9.4 8 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 45 c2j61B_ not modelled 9.0 26 PDB header:lectin Chain: B: PDB Molecule:ficolin-2; PDBTitle: l-ficolin complexed to n-acetylglucosamine (forme c) 46 d1i1ga2 not modelled 8.4 10 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 47 d2prra1 not modelled 8.3 24 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 48 c2jzyA_ not modelled 8.2 19 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein pcor; PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae 49 c2bbjB_ not modelled 8.2 13 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 50 d1tama_ not modelled 8.1 8 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 51 c2k5eA_ not modelled 8.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195 52 d1od5a2 not modelled 7.9 22 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 53 d1lwub1 not modelled 7.7 13 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 54 d1hiwa_ not modelled 7.7 4 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Immunodeficiency virus matrix proteins 55 c2xv4S_ not modelled 7.6 15 PDB header:transcription Chain: S: PDB Molecule:dna-directed rna polymerase iii subunit rpc3; PDBTitle: structure of human rpc62 (partial) 56 c2do6A_ not modelled 7.6 7 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 57 d1m1jc1 not modelled 7.3 26 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 58 d1ffya1 not modelled 7.3 12 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 59 d1rrqa1 not modelled 7.3 11 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 60 c2aj1A_ not modelled 7.3 13 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 61 d1x0pa1 not modelled 7.2 24 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:BLUF domain 62 d2a1jb1 not modelled 7.2 27 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 63 d1ngka_ not modelled 7.2 15 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 64 c2d9sA_ not modelled 7.2 7 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 65 d1j9ia_ not modelled 7.1 8 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Terminase gpNU1 subunit domain 66 d1x2ia1 not modelled 7.0 26 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 67 d1orna_ not modelled 7.0 17 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 68 d1j4na_ not modelled 7.0 14 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 69 d1dlca1 not modelled 7.0 39 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 70 c2kscA_ not modelled 6.9 25 PDB header:unknown function Chain: A: PDB Molecule:cyanoglobin; PDBTitle: solution structure of synechococcus sp. pcc 7002 hemoglobin 71 c1dlcA_ not modelled 6.9 32 PDB header:toxin Chain: A: PDB Molecule:delta-endotoxin cryiiia; PDBTitle: crystal structure of insecticidal delta-endotoxin from2 bacillus thuringiensis at 2.5 angstroms resolution 72 d1fida_ not modelled 6.9 30 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 73 c2e1cA_ not modelled 6.9 10 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 74 c1p68A_ not modelled 6.7 29 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed protein s-824; PDBTitle: solution structure of s-824, a de novo designed four helix2 bundle 75 d1fftb2 not modelled 6.6 12 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 76 c2zbcH_ not modelled 6.6 13 PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. 77 c2r7fA_ not modelled 6.6 14 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease ii family protein; PDBTitle: crystal structure of ribonuclease ii family protein from deinococcus2 radiodurans, hexagonal crystal form. northeast structural genomics3 target drr63 78 d1m1ha2 not modelled 6.5 13 Fold:Ferredoxin-like Superfamily:N-utilization substance G protein NusG, N-terminal domain Family:N-utilization substance G protein NusG, N-terminal domain 79 c3aq8A_ not modelled 6.5 17 PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form 80 c2djwF_ not modelled 6.4 25 PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 81 c3pcoD_ not modelled 6.4 15 PDB header:ligase Chain: D: PDB Molecule:phenylalanyl-trna synthetase, beta chain; PDBTitle: crystal structure of e. coli phenylalanine-trna synthetase complexed2 with phenylalanine and amp 82 c2w1oA_ not modelled 6.4 25 PDB header:translation Chain: A: PDB Molecule:60s acidic ribosomal protein p2; PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2 83 c2jsxA_ not modelled 6.4 8 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 84 d1s69a_ not modelled 6.3 25 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 85 d2csba3 not modelled 6.2 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 86 d1ilea1 not modelled 6.2 15 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 87 c2hfnJ_ not modelled 6.2 24 PDB header:electron transport Chain: J: PDB Molecule:synechocystis photoreceptor (slr1694); PDBTitle: crystal structures of the synechocystis photoreceptor slr1694 reveal2 distinct structural states related to signaling 88 d2vv5a3 not modelled 6.2 10 Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region 89 c3bvhC_ not modelled 6.1 30 PDB header:blood clotting Chain: C: PDB Molecule:fibrinogen gamma chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 90 d1jida_ not modelled 6.1 40 Fold:SRP19 Superfamily:SRP19 Family:SRP19 91 d1vpba_ not modelled 6.0 13 Fold:Putative modulator of DNA gyrase, PmbA/TldD Superfamily:Putative modulator of DNA gyrase, PmbA/TldD Family:Putative modulator of DNA gyrase, PmbA/TldD 92 d1rzsa_ not modelled 6.0 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 93 c1jb7A_ not modelled 6.0 14 PDB header:dna-binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: dna g-quartets in a 1.86 a resolution structure of an oxytricha nova2 telomeric protein-dna complex 94 c1ph4A_ not modelled 6.0 14 PDB header:dna binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: crystal structure of the oxytricha nova telomere end-binding protein2 complexed with noncognate ssdna ggggttttggcg 95 d1f7ua3 not modelled 6.0 12 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Family:Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 96 c2jvaA_ not modelled 6.0 23 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 97 d2cfxa2 not modelled 6.0 25 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 98 d1re3b1 not modelled 5.9 17 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 99 c2kddB_ not modelled 5.8 31 PDB header:cell cycle Chain: B: PDB Molecule:borealin; PDBTitle: solution structure of the conserved c-terminal dimerization2 domain of borealin

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0