Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	K	P	K	A	Y	C	R	L	F	L	P	S	F	L	L	L	S	A	C	T	V	D	I	S	Q	P	D	P	S	A	T	A	V	D	A	E	A	K	T	W	A	V	K	F	Q	H	Q	S	S	F	T	E	Q	S	I	K	E	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?														?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?		?					?	?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	A	P	D	L	K	P	G	D	L	L	F	S	S	S	L	G	V	T	S	F	G	I	R	V	F	S	T	S	S	V	S	H	V	A	I	F	L	G	D	N	N	V	A	E	A	T	G	A	G	V	Q	I	V	S	L	K	K	A	M
Secondary structure
SS confidence
Disorder																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	H	S	D	K	L	F	V	L	R	V	P	D	L	T	P	Q	Q	A	T	D	I	T	A	F	A	N	K	I	K	D	S	G	Y	N	Y	R	G	I	V	E	F	I	P	F	M	V	T	R	Q	M	C	S	L	N	P	F	S	E	D
Secondary structure
SS confidence
Disorder																																																?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	R	Q	Q	C	V	S	G	L	A	K	A	Q	L	S	S	V	G	E	G	D	K	K	S	W	F	C	S	E	F	V	T	D	A	F	A	K	A	G	H	P	L	T	L	A	Q	S	G	W	I	S	P	A	D	L	M	H	M	R	I
Secondary structure
SS confidence
Disorder				?	?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Sequence		G	D	V	S	A	F	K	P	E	T	Q	L	Q	Y	V	G	H	L	K	P	G	I	Y	I	K	A	G	R	F	V	G	L	T	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?		?	?																			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3kw0 chain D Region: 62 - 236 Aligned: 143 Modelled: 149 Confidence: 99.9% Identity: 27% PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution Phyre2 PDB 2fg0 chain B Region: 6 - 132 Aligned: 112 Modelled: 113 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution Phyre2 PDB 2if6 chain A domain 1 Region: 64 - 256 Aligned: 141 Modelled: 153 Confidence: 99.9% Identity: 28% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: YiiX-like Phyre2 PDB 2evr chain A domain 2 Region: 6 - 132 Aligned: 112 Modelled: 127 Confidence: 99.9% Identity: 21% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: NlpC/P60 Phyre2 PDB 2xiv chain A Region: 6 - 119 Aligned: 100 Modelled: 101 Confidence: 99.9% Identity: 23% PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis Phyre2 PDB 3npf chain B Region: 7 - 132 Aligned: 115 Modelled: 124 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution Phyre2 PDB 3pbi chain A Region: 6 - 119 Aligned: 100 Modelled: 101 Confidence: 99.9% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution Phyre2 PDB 3h41 chain A Region: 6 - 133 Aligned: 115 Modelled: 125 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution Phyre2 PDB 3gt2 chain A Region: 6 - 116 Aligned: 96 Modelled: 111 Confidence: 99.9% Identity: 25% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c Phyre2 PDB 2k1g chain A Region: 6 - 135 Aligned: 116 Modelled: 118 Confidence: 99.9% Identity: 21% PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 Phyre2 PDB 3i86 chain A Region: 6 - 133 Aligned: 111 Modelled: 115 Confidence: 99.8% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 Phyre2 PDB 3m1u chain B Region: 7 - 107 Aligned: 80 Modelled: 80 Confidence: 99.5% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution Phyre2 PDB 2p1g chain A Region: 53 - 131 Aligned: 70 Modelled: 70 Confidence: 98.9% Identity: 26% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis Phyre2 PDB 2kyt chain A Region: 59 - 188 Aligned: 93 Modelled: 106 Confidence: 98.5% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain Phyre2 PDB 2im9 chain A domain 1 Region: 62 - 130 Aligned: 58 Modelled: 69 Confidence: 95.7% Identity: 17% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Lpg0564-like Phyre2 PDB 2im9 chain A Region: 62 - 130 Aligned: 58 Modelled: 69 Confidence: 95.7% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 Phyre2 PDB 2io8 chain A domain 2 Region: 66 - 99 Aligned: 25 Modelled: 34 Confidence: 63.9% Identity: 36% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: CHAP domain Phyre2 PDB 1wpg chain A domain 1 Region: 58 - 92 Aligned: 35 Modelled: 35 Confidence: 50.0% Identity: 29% Fold: Double-stranded beta-helix Superfamily: Calcium ATPase, transduction domain A Family: Calcium ATPase, transduction domain A Phyre2 PDB 2hc8 chain A Region: 58 - 89 Aligned: 32 Modelled: 32 Confidence: 43.0% Identity: 9% PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain Phyre2 PDB 1o9y chain A Region: 64 - 116 Aligned: 40 Modelled: 40 Confidence: 41.7% Identity: 25% Fold: Surface presentation of antigens (SPOA) Superfamily: Surface presentation of antigens (SPOA) Family: Surface presentation of antigens (SPOA) Phyre2 1 c3kw0D_ 2 c2fg0B_ 3 d2if6a1 4 d2evra2 5 c2xivA_ 6 c3npfB_ 7 c3pbiA_ 8 c3h41A_ 9 c3gt2A_ 10 c2k1gA_ 11 c3i86A_ 12 c3m1uB_ 13 c2p1gA_ 14 c2kytA_ 15 d2im9a1 16 c2im9A_ 17 d2io8a2 18 d1wpga1 19 c2hc8A_ 20 d1o9ya_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3kw0D_ 99.9 27 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 2 c2fg0B_ 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 3 d2if6a1 99.9 28 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like 4 d2evra2 99.9 21 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 5 c2xivA_ 99.9 23 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 6 c3npfB_ 99.9 19 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 7 c3pbiA_ 99.9 25 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 8 c3h41A_ 99.9 19 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 9 c3gt2A_ 99.9 25 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 10 c2k1gA_ 99.9 21 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 11 c3i86A_ 99.8 24 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 12 c3m1uB_ 99.5 18 PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution 13 c2p1gA_ 98.9 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis 14 c2kytA_ 98.5 26 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 15 d2im9a1 95.7 17 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Lpg0564-like 16 c2im9A_ 95.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 17 d2io8a2 63.9 36 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:CHAP domain 18 d1wpga1 50.0 29 Fold:Double-stranded beta-helix Superfamily:Calcium ATPase, transduction domain A Family:Calcium ATPase, transduction domain A 19 c2hc8A_ 43.0 9 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 20 d1o9ya_ 41.7 25 Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA) 21 c3kopB_ not modelled 40.0 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution 22 c3b8eC_ not modelled 39.2 20 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 23 d1gtta1 not modelled 37.5 16 Fold:FAH Superfamily:FAH Family:FAH 24 c3nnlB_ not modelled 37.4 23 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 25 c3b9bA_ not modelled 36.8 30 PDB header:hydrolase Chain: A: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: structure of the e2 beryllium fluoride complex of the serca2 ca2+-atpase 26 d2evra1 not modelled 36.3 23 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:Spr N-terminal domain-like 27 c3j08A_ not modelled 36.3 9 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 28 d2z1ea2 not modelled 35.7 24 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 29 d1ixda_ not modelled 34.0 11 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 30 c2vpmB_ not modelled 32.8 25 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 31 c2kijA_ not modelled 31.7 18 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a 32 d2jfga2 not modelled 31.1 38 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 33 d1we3o_ not modelled 30.5 20 Fold:GroES-like Superfamily:GroES-like Family:GroES 34 d2zoda2 not modelled 30.1 29 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 35 d2gbsa1 not modelled 29.9 27 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 36 d2nqra2 not modelled 29.9 14 Fold:MoeA N-terminal region -like Superfamily:MoeA N-terminal region -like Family:MoeA N-terminal region -like 37 c3qdfA_ not modelled 29.7 29 PDB header:isomerase Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; PDBTitle: crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from mycobacterium marinum 38 c1mhsA_ not modelled 29.4 30 PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase 39 d2eyqa1 not modelled 29.1 26 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 40 c3j09A_ not modelled 28.8 9 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 41 c1i7oC_ not modelled 28.6 16 PDB header:isomerase, lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate degradation bifunctional PDBTitle: crystal structure of hpce 42 c2q1dX_ not modelled 27.9 22 PDB header:lyase Chain: X: PDB Molecule:2-keto-3-deoxy-d-arabinonate dehydratase; PDBTitle: 2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and2 2,5-dioxopentanoate 43 c3ixzA_ not modelled 27.7 23 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 44 c3mvnA_ not modelled 27.7 28 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp 45 c3b8cB_ not modelled 27.6 21 PDB header:hydrolase Chain: B: PDB Molecule:atpase 2, plasma membrane-type; PDBTitle: crystal structure of a plasma membrane proton pump 46 c2zxeA_ not modelled 27.1 20 PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 47 c2kbzA_ not modelled 26.8 23 PDB header:viral protein Chain: A: PDB Molecule:15 protein (bacteriophage spp1 complete PDBTitle: nmr structure of protein gp15 of bacteriophage spp1 48 d1y7ma2 not modelled 26.0 8 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 49 d1ltqa1 not modelled 26.0 22 Fold:HAD-like Superfamily:HAD-like Family:phosphatase domain of polynucleotide kinase 50 d1uz5a2 not modelled 25.7 20 Fold:MoeA N-terminal region -like Superfamily:MoeA N-terminal region -like Family:MoeA N-terminal region -like 51 d1nkqa_ not modelled 25.6 22 Fold:FAH Superfamily:FAH Family:FAH 52 c2ioaA_ not modelled 24.8 32 PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor 53 d2ftsa2 not modelled 24.6 20 Fold:MoeA N-terminal region -like Superfamily:MoeA N-terminal region -like Family:MoeA N-terminal region -like 54 d1aono_ not modelled 24.2 11 Fold:GroES-like Superfamily:GroES-like Family:GroES 55 d1hyoa2 not modelled 23.4 54 Fold:FAH Superfamily:FAH Family:FAH 56 d1vrba1 not modelled 23.4 27 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 57 d1k20a_ not modelled 23.1 18 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 58 d2fcta1 not modelled 22.8 23 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 59 d1p3ha_ not modelled 22.7 23 Fold:GroES-like Superfamily:GroES-like Family:GroES 60 d3c9ua2 not modelled 22.0 21 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 61 d1zcea1 not modelled 21.8 36 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 62 d1khia1 not modelled 21.7 20 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 63 c3rfuC_ not modelled 20.9 19 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 64 d2ar1a1 not modelled 20.8 14 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 65 d1gtta2 not modelled 20.7 31 Fold:FAH Superfamily:FAH Family:FAH 66 d1c0aa2 not modelled 19.8 30 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 67 c1wzoC_ not modelled 19.7 23 PDB header:isomerase Chain: C: PDB Molecule:hpce; PDBTitle: crystal structure of the hpce from thermus thermophilus hb8 68 d1l0wa2 not modelled 19.5 40 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 69 d1jr7a_ not modelled 19.1 18 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Gab protein (hypothetical protein YgaT) 70 c2wbqA_ not modelled 18.8 36 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 71 d1in0a1 not modelled 18.4 23 Fold:Ferredoxin-like Superfamily:YajQ-like Family:YajQ-like 72 d1e8ca2 not modelled 18.2 20 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 73 c2nqqA_ not modelled 17.7 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 74 c3fd5B_ not modelled 17.6 25 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase 1; PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp 75 d1sawa_ not modelled 17.6 26 Fold:FAH Superfamily:FAH Family:FAH 76 d2g2xa1 not modelled 17.0 25 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 77 c2l8kA_ not modelled 16.9 21 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 7; PDBTitle: nmr structure of the arterivirus nonstructural protein 7 alpha (nsp72 alpha) 78 c2nnzA_ not modelled 16.5 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: solution structure of the hypothetical protein af2241 from2 archaeoglobus fulgidus 79 c2og5A_ not modelled 16.5 33 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 80 d1ds1a_ not modelled 16.5 55 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 81 c3lzkC_ not modelled 16.4 23 PDB header:hydrolase Chain: C: PDB Molecule:fumarylacetoacetate hydrolase family protein; PDBTitle: the crystal structure of a probably aromatic amino acid2 degradation protein from sinorhizobium meliloti 1021 82 d1foea2 not modelled 16.3 38 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 83 d1o6aa_ not modelled 16.1 7 Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA) 84 c1hyoB_ not modelled 16.1 54 PDB header:hydrolase Chain: B: PDB Molecule:fumarylacetoacetate hydrolase; PDBTitle: crystal structure of fumarylacetoacetate hydrolase2 complexed with 4-(hydroxymethylphosphinoyl)-3-oxo-butanoic3 acid 85 d1njjb1 not modelled 16.1 19 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 86 d2hawa1 not modelled 16.0 0 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Manganese-dependent inorganic pyrophosphatase (family II) 87 d1koha2 not modelled 15.9 13 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Non-canonical RBD domain 88 d1knwa1 not modelled 15.9 36 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 89 d1clia2 not modelled 15.8 21 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 90 d2evea1 not modelled 15.7 24 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 91 c3ebrA_ not modelled 15.6 7 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized rmlc-like cupin; PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution 92 d1f3ta1 not modelled 15.4 11 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 93 c1khiA_ not modelled 15.3 19 PDB header:structural protein Chain: A: PDB Molecule:hex1; PDBTitle: crystal structure of hex1 94 d1g8aa_ not modelled 15.1 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Fibrillarin homologue 95 c3l53F_ not modelled 15.1 31 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative fumarylacetoacetate isomerase/hydrolase; PDBTitle: crystal structure of a putative fumarylacetoacetate2 isomerase/hydrolase from oleispira antarctica 96 c3al6A_ not modelled 14.7 26 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 97 c2x35A_ not modelled 14.7 27 PDB header:transcription Chain: A: PDB Molecule:peregrin; PDBTitle: molecular basis of histone h3k36me3 recognition by the pwwp2 domain of brpf1. 98 c2dfuB_ not modelled 14.7 26 PDB header:isomerase Chain: B: PDB Molecule:probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; PDBTitle: crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from thermus thermophilus hb8 99 c3lkxA_ not modelled 14.6 17 PDB header:chaperone Chain: A: PDB Molecule:transcription factor btf3; PDBTitle: human nac dimerization domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0