PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qdfA_

Fold library id	PDB Header	Molecule	Title
c3qdfA_	PDB header: isomerase	Chain: A: PDB Molecule: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;	PDBTitle: crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from mycobacterium marinum

Links to external resources
Added to library: Sat Feb 5 08:52:48 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S M R L G R I A S P D G V A F A S I E G E L D N P G A M T A R E I A E H P F G T P N F T G R S W P L A D V R L L A P I L A S K V V C V G K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T
G G G
T T S S
G G G S
S
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y T P A D P V I F L K P N T A I V G P N V P I R L P A N A S P V H F E G E L A I V I G R P C K D V S A A Q A V D N I L G Y T I G N D V S A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
G G G
T T
T T
S
S
B S S
G G G G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D Q Q K S D G Q W T R A K G H D T F C P V G P W I V T D V D P A D L E L R T E V N G A V K Q H A R T S L M I H D V G A I V E W I S A V M T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S T T
S S
G G G
T T G G G B S S
S
B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . .

Sequence L P G D L I L T G T P A G V G P I E D G D T V S I T I E G I G T L T N P V V R K G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T
T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	M	R	L	G	R	I	A	S	P	D	G	V	A	F	A	S	I	E	G	E	L	D	N	P	G	A	M	T	A	R	E	I	A	E	H	P	F	G	T	P	N	F	T	G	R	S	W	P	L	A	D	V	R	L	L	A	P	I	L	A	S	K	V	V	C	V	G	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T									S		T	T		G	G	G										T	T	S	S										G	G	G	S					S				S						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	T	P	A	D	P	V	I	F	L	K	P	N	T	A	I	V	G	P	N	V	P	I	R	L	P	A	N	A	S	P	V	H	F	E	G	E	L	A	I	V	I	G	R	P	C	K	D	V	S	A	A	Q	A	V	D	N	I	L	G	Y	T	I	G	N	D	V	S	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B												G	G	G				T	T							T	T			S													S		B	S	S			G	G	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	Q	Q	K	S	D	G	Q	W	T	R	A	K	G	H	D	T	F	C	P	V	G	P	W	I	V	T	D	V	D	P	A	D	L	E	L	R	T	E	V	N	G	A	V	K	Q	H	A	R	T	S	L	M	I	H	D	V	G	A	I	V	E	W	I	S	A	V	M	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	S						S	T	T										S	S			G	G	G								T	T								G	G	G	B	S	S													S		B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Sequence	L	P	G	D	L	I	L	T	G	T	P	A	G	V	G	P	I	E	D	G	D	T	V	S	I	T	I	E	G	I	G	T	L	T	N	P	V	V	R	K	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T									S							T	T								T	T	T										T	T