Email l.a.kelley@imperial.ac.uk Description P60624 Date Thu Jan 5 12:06:57 GMT 2012 Unique Job ID c7b0541ea8b9228b

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2gycs1 100.0 100 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 2 d2zjrr1 100.0 43 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 3 c3bboW_ 100.0 34 PDB header:ribosome Chain: W: PDB Molecule:ribosomal protein l24; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 4 d2j01y1 100.0 43 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 5 c2ftcN_ 100.0 30 PDB header:ribosome Chain: N: PDB Molecule:mitochondrial ribosomal protein l24; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 6 c3iz5Y_ 99.9 28 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 7 d1vqot1 99.9 27 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 8 c4a1cS_ 99.9 32 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 9 c1s1iU_ 99.8 29 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l26-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 10 c2zkrt_ 99.2 33 PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 11 c2kvqG_ 96.2 19 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 12 c2jvvA_ 96.2 19 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 13 d1nppa2 96.0 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 14 c3p8bB_ 95.7 28 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 15 d1nz9a_ 95.5 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 16 d2joya1 95.3 24 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal protein L14e 17 d2do3a1 95.0 28 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 18 c2ckkA_ 94.0 16 PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. 19 c2xhcA_ 93.0 18 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 20 c1m1gB_ 92.3 25 PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) 21 c4a19F_ not modelled 91.0 26 PDB header:ribosome Chain: F: PDB Molecule:rpl14; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 22 c3izcN_ not modelled 90.7 23 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 23 c3iz5N_ not modelled 90.3 23 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 24 c3izcG_ not modelled 89.9 24 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein rpl6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 25 c2e6zA_ not modelled 87.6 25 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 26 c4a1dE_ not modelled 83.9 35 PDB header:ribosome Chain: E: PDB Molecule:rpl6; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. 27 c4a18N_ not modelled 82.2 30 PDB header:ribosome Chain: N: PDB Molecule:rpl27; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1 28 c2e70A_ not modelled 78.6 31 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 29 c3iz5G_ not modelled 74.8 32 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein l6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 30 c2xzmW_ not modelled 56.5 16 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 31 c3kbgA_ not modelled 49.5 12 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 32 c3iz6D_ not modelled 44.8 29 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 33 d1vhka1 not modelled 43.3 18 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 34 c3izca_ not modelled 42.1 25 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein rpl1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 35 c4a1aP_ not modelled 35.8 32 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 36 c3iz5a_ not modelled 35.4 28 PDB header:ribosome Chain: A: PDB Molecule:60s ribosomal protein l1 (l1p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 37 d1nxza1 not modelled 30.1 15 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 38 c2dxcG_ not modelled 28.5 22 PDB header:hydrolase Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha; PDBTitle: recombinant thiocyanate hydrolase, fully-matured form 39 d1o12a1 not modelled 24.8 29 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA 40 c3k7aM_ not modelled 22.8 15 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 41 d1ng2a2 not modelled 22.8 14 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 42 c2kmmA_ not modelled 20.7 28 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 43 c3qz9D_ not modelled 20.3 33 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 44 d1wlpb2 not modelled 20.1 30 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 45 c3izbD_ not modelled 19.3 23 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 46 c3gqhB_ not modelled 19.3 19 PDB header:viral protein Chain: B: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the bacteriophage phi29 gene product2 12 c-terminal fragment 47 d1pfta_ not modelled 18.9 14 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 48 d1tova_ not modelled 18.9 29 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 49 d1jb0e_ not modelled 18.7 23 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 50 d1dl6a_ not modelled 18.3 3 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 51 d1psea_ not modelled 18.0 36 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 52 c2k6dA_ not modelled 16.9 30 PDB header:sh3 domain/ubiquitin Chain: A: PDB Molecule:sh3 domain-containing kinase-binding protein 1; PDBTitle: cin85 sh3-c domain in complex with ubiquitin 53 d1ugpb_ not modelled 16.7 30 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 54 d1p7ba1 not modelled 15.1 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 55 d1qp3a_ not modelled 14.5 36 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Photosystem I accessory protein E (PsaE) 56 c3dclC_ not modelled 14.4 40 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:tm1086; PDBTitle: crystal structure of tm1086 57 d1k4us_ not modelled 14.4 35 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 58 c2ed0A_ not modelled 14.2 17 PDB header:signaling protein Chain: A: PDB Molecule:abl interactor 2; PDBTitle: solution structure of the sh3 domain of abl interactor 22 (abelson interactor 2) 59 c2eyxA_ not modelled 13.6 30 PDB header:signaling protein Chain: A: PDB Molecule:v-crk sarcoma virus ct10 oncogene homolog PDBTitle: c-terminal sh3 domain of ct10-regulated kinase 60 c2gb5B_ not modelled 13.5 8 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 61 d1v29b_ not modelled 13.3 11 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 62 d2dk3a1 not modelled 12.8 38 Fold:SH3-like barrel Superfamily:Mib/herc2 domain-like Family:Mib/herc2 domain 63 c2l0aA_ not modelled 12.4 17 PDB header:signaling protein Chain: A: PDB Molecule:signal transducing adapter molecule 1; PDBTitle: solution nmr structure of signal transducing adapter molecule 1 stam-12 from homo sapiens, northeast structural genomics consortium target3 hr4479e 64 d2cona1 not modelled 12.4 25 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 65 d2c78a1 not modelled 12.2 24 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 66 c2drmB_ not modelled 11.8 39 PDB header:contractile protein Chain: B: PDB Molecule:acanthamoeba myosin ib; PDBTitle: acanthamoeba myosin i sh3 domain bound to acan125 67 c2dnuA_ not modelled 11.8 22 PDB header:structural genomics, structural protein Chain: A: PDB Molecule:sh3 multiple domains 1; PDBTitle: solution structure of rsgi ruh-061, a sh3 domain from human 68 c2xzm1_ not modelled 11.8 31 PDB header:ribosome Chain: 1: PDB Molecule:ribosomal protein s28e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 69 d1xl4a1 not modelled 11.7 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 70 d1ne3a_ not modelled 11.2 38 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 71 d1nlqa_ not modelled 11.1 9 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Nucleoplasmin-like core domain Family:Nucleoplasmin-like core domain 72 d1ppya_ not modelled 10.9 24 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 73 d1ny4a_ not modelled 10.8 46 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 74 d1gria2 not modelled 10.8 30 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 75 d1ka5a_ not modelled 10.7 28 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 76 c2csqA_ not modelled 10.7 14 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:rim binding protein 2; PDBTitle: solution structure of the second sh3 domain of human rim-2 binding protein 2 77 c1x2qA_ not modelled 10.6 22 PDB header:signaling protein Chain: A: PDB Molecule:signal transducing adapter molecule 2; PDBTitle: solution structure of the sh3 domain of the signal2 transducing adaptor molecule 2 78 d2hpra_ not modelled 10.5 22 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 79 c1wi7A_ not modelled 10.3 26 PDB header:protein binding Chain: A: PDB Molecule:sh3-domain kinase binding protein 1; PDBTitle: solution structure of the sh3 domain of sh3-domain kinase2 binding protein 1 80 c3t07D_ not modelled 10.3 19 PDB header:transferase/transferase inhibitor Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid 81 c1u4fD_ not modelled 10.1 25 PDB header:allergen Chain: D: PDB Molecule:inward rectifier potassium channel 2; PDBTitle: crystal structure of cytoplasmic domains of irk1 (kir2.1)2 channel 82 d2b1ya1 not modelled 10.0 26 Fold:Atu1913-like Superfamily:Atu1913-like Family:Atu1913-like 83 c2bz8B_ not modelled 10.0 22 PDB header:sh3 domain Chain: B: PDB Molecule:sh3-domain kinase binding protein 1; PDBTitle: n-terminal sh3 domain of cin85 bound to cbl-b peptide 84 d1n9pa_ not modelled 9.8 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 85 d1mxaa2 not modelled 9.8 40 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 86 d1cm3a_ not modelled 9.7 17 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 87 c3ihsB_ not modelled 9.6 22 PDB header:transport protein Chain: B: PDB Molecule:phosphocarrier protein hpr; PDBTitle: crystal structure of a phosphocarrier protein hpr from2 bacillus anthracis str. ames 88 d2nzul1 not modelled 9.5 22 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 89 c3iz5U_ not modelled 9.5 31 PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 90 c1wxbA_ not modelled 9.4 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:epidermal growth factor receptor pathway PDBTitle: solution structure of the sh3 domain from human epidermal2 growth factor receptor pathway substrate 8-like protein 91 c2zkrq_ not modelled 9.1 36 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 92 d1uhfa_ not modelled 8.9 22 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 93 c2bzxA_ not modelled 8.8 22 PDB header:sh3 domain Chain: A: PDB Molecule:crk-like protein; PDBTitle: atomic model of crkl-sh3c monomer 94 d1ug1a_ not modelled 8.8 24 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 95 c2djqA_ not modelled 8.7 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 domain containing ring finger 2; PDBTitle: the solution structure of the first sh3 domain of mouse sh32 domain containing ring finger 2 96 d1ptfa_ not modelled 8.7 22 Fold:HPr-like Superfamily:HPr-like Family:HPr-like 97 d1wlpb1 not modelled 8.6 13 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 98 c2wh7A_ not modelled 8.3 26 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-phage associated; PDBTitle: the partial structure of a group a streptpcoccal phage-2 encoded tail fibre hyaluronate lyase hylp2 99 c2e4fA_ not modelled 8.2 18 PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2