Email l.a.kelley@imperial.ac.uk Description P76213 Date Thu Jan 5 12:20:36 GMT 2012 Unique Job ID c5b3c58936e90eea

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1yd2A_ 99.9 33 PDB header:dna binding protein Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation 2 c1yd6A_ 99.9 31 PDB header:dna binding protein Chain: A: PDB Molecule:uvrc; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax 3 c2wshC_ 99.9 23 PDB header:hydrolase Chain: C: PDB Molecule:endonuclease ii; PDBTitle: structure of bacteriophage t4 endoii e118a mutant 4 d1mk0a_ 98.6 15 Fold:GIY-YIG endonuclease Superfamily:GIY-YIG endonuclease Family:GIY-YIG endonuclease 5 c3nicA_ 96.8 26 PDB header:hydrolase/dna Chain: A: PDB Molecule:eco29kir; PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f 6 c1zg2A_ 94.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein bh0048; PDBTitle: solution nmr structure of the upf0213 protein bh0048 from2 bacillus halodurans. northeast structural genomics target3 bhr2. 7 c1ywlA_ 93.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0213 protein ef2693; PDBTitle: solution nmr structure of the protein ef2693 from e.2 faecalis: northeast structural genomics consortium target3 efr36 8 d1pd0a4 68.5 25 Fold:Gelsolin-like Superfamily:C-terminal, gelsolin-like domain of Sec23/24 Family:C-terminal, gelsolin-like domain of Sec23/24 9 d1utaa_ 41.4 14 Fold:Ferredoxin-like Superfamily:Sporulation related repeat Family:Sporulation related repeat 10 d1xdpa4 38.0 33 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 11 c2gj3A_ 37.8 19 PDB header:transferase Chain: A: PDB Molecule:nitrogen fixation regulatory protein; PDBTitle: crystal structure of the fad-containing pas domain of the2 protein nifl from azotobacter vinelandii. 12 d2o8ra4 36.6 21 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 13 c1x60A_ 34.5 14 PDB header:hydrolase Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc 14 c1pd0A_ 32.7 26 PDB header:transport protein Chain: A: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the copii coat subunit, sec24,2 complexed with a peptide from the snare protein sed53 (yeast syntaxin-5) 15 c2qkpD_ 31.8 28 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of c-terminal domain of smu_1151c from streptococcus2 mutans 16 c2rivB_ 30.7 33 PDB header:signaling protein Chain: B: PDB Molecule:thyroxine-binding globulin; PDBTitle: crystal structure of the reactive loop cleaved human thyroxine binding2 globulin 17 c3egxB_ 28.2 25 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 18 c3luqC_ 27.4 24 PDB header:transferase Chain: C: PDB Molecule:sensor protein; PDBTitle: the crystal structure of a pas domain from a sensory box2 histidine kinase regulator from geobacter sulfurreducens to3 2.5a 19 c3eh2B_ 27.2 30 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c 20 c1m2vB_ 26.8 25 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24; PDBTitle: crystal structure of the yeast sec23/24 heterodimer 21 c3eg9B_ not modelled 26.5 30 PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 22 c1hleB_ not modelled 25.4 13 PDB header:hydrolase inhibitor(serine proteinase) Chain: B: PDB Molecule:horse leukocyte elastase inhibitor; PDBTitle: crystal structure of cleaved equine leucocyte elastase2 inhibitor determined at 1.95 angstroms resolution 23 c1xdoB_ not modelled 23.0 33 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 24 d1gcca_ not modelled 20.8 33 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:GCC-box binding domain 25 c2o8rA_ not modelled 20.4 21 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 26 c3mxqC_ not modelled 20.1 13 PDB header:transferase Chain: C: PDB Molecule:sensor protein; PDBTitle: crystal structure of sensory box sensor histidine kinase from vibrio2 cholerae 27 c3mr0B_ not modelled 20.1 10 PDB header:transcription regulator Chain: B: PDB Molecule:sensory box histidine kinase/response regulator; PDBTitle: crystal structure of sensory box histidine kinase/response regulator2 from burkholderia thailandensis e264 28 d1g1pa_ not modelled 19.7 71 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Conotoxin 29 c1jjoE_ not modelled 18.7 25 PDB header:signaling protein Chain: E: PDB Molecule:neuroserpin; PDBTitle: crystal structure of mouse neuroserpin (cleaved form) 30 c2jheB_ not modelled 18.6 17 PDB header:transcription Chain: B: PDB Molecule:transcription regulator tyrr; PDBTitle: n-terminal domain of tyrr transcription factor (residues 1 -2 190) 31 d1nwza_ not modelled 17.8 15 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:PYP-like 32 d1lkta_ not modelled 17.6 29 Fold:Head-binding domain of phage P22 tailspike protein Superfamily:Head-binding domain of phage P22 tailspike protein Family:Head-binding domain of phage P22 tailspike protein 33 c2w0nA_ not modelled 17.0 17 PDB header:transferase Chain: A: PDB Molecule:sensor protein dcus; PDBTitle: plasticity of pas domain and potential role for signal2 transduction in the histidine-kinase dcus 34 c3f02C_ not modelled 16.9 17 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:neuroserpin; PDBTitle: cleaved human neuroserpin 35 c3mfxA_ not modelled 16.8 14 PDB header:transcription Chain: A: PDB Molecule:sensory box/ggdef family protein; PDBTitle: crystal structure of the sensory box domain of the sensory-2 box/ggdef protein so_1695 from shewanella oneidensis,3 northeast structural genomics consortium target sor288b 36 c2h4qB_ not modelled 15.8 13 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:heterochromatin-associated protein ment; PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the cleaved conformation 37 c9paiB_ not modelled 15.3 19 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:protein (plasminogen activator inhibitor-1) residues 365- PDBTitle: cleaved substrate variant of plasminogen activator inhibitor-1 38 d1v9ya_ not modelled 15.0 19 Fold:Profilin-like Superfamily:PYP-like sensor domain (PAS domain) Family:Heme-binding PAS domain 39 c1v9yA_ not modelled 15.0 19 PDB header:signaling protein Chain: A: PDB Molecule:heme pas sensor protein; PDBTitle: crystal structure of the heme pas sensor domain of ec dos (ferric2 form) 40 c1f0cB_ not modelled 15.0 20 PDB header:viral protein Chain: B: PDB Molecule:ice inhibitor; PDBTitle: structure of the viral serpin crma 41 d2gjva1 not modelled 14.8 27 Fold:Phage tail protein-like Superfamily:Phage tail protein-like Family:STM4215-like 42 c3gr1A_ not modelled 14.4 15 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 43 c2gjvF_ not modelled 13.8 27 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative cytoplasmic protein; PDBTitle: crystal structure of a protein of unknown function from salmonella2 typhimurium 44 c1yylM_ not modelled 13.8 56 PDB header:viral protein/immune system Chain: M: PDB Molecule:cd4m33, scorpion-toxin mimic of cd4; PDBTitle: crystal structure of cd4m33, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b 45 c1yylS_ not modelled 13.7 56 PDB header:viral protein/immune system Chain: S: PDB Molecule:cd4m33, scorpion-toxin mimic of cd4; PDBTitle: crystal structure of cd4m33, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b 46 c2r78D_ not modelled 13.2 11 PDB header:transferase Chain: D: PDB Molecule:sensor protein; PDBTitle: crystal structure of a domain of the sensory box sensor2 histidine kinase/response regulator from geobacter3 sulfurreducens 47 c7apiB_ not modelled 12.9 33 PDB header:proteinase inhibitor Chain: B: PDB Molecule:alpha 1-antitrypsin; PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism 48 c3eg9A_ not modelled 12.4 14 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec23a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin 49 c2vkyB_ not modelled 12.2 29 PDB header:viral protein Chain: B: PDB Molecule:tail protein, piigcn4; PDBTitle: headbinding domain of phage p22 tailspike c-terminally2 fused to isoleucine zipper piigcn4 (chimera i) 50 c3mjqB_ not modelled 12.1 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the pas domain of q24qt8_deshy protein from2 desulfitobacterium hafniense. northeast structural genomics3 consortium target dhr85c. 51 d2fcja1 not modelled 11.8 16 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 52 d1d0na6 not modelled 11.1 19 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 53 c2i9nA_ not modelled 9.8 22 PDB header:de novo protein Chain: A: PDB Molecule:mhb4a peptide; PDBTitle: design of bivalent miniprotein consisting of two2 independent elements, a b-hairpin peptide and a-helix3 peptide, tethered by four glycines 54 d2omoa1 not modelled 9.6 9 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PA3566-like 55 d1svya_ not modelled 9.1 10 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 56 c3c7tB_ not modelled 9.0 13 PDB header:hydrolase Chain: B: PDB Molecule:ecdysteroid-phosphate phosphatase; PDBTitle: crystal structure of the ecdysone phosphate phosphatase, eppase, from2 bombix mori in complex with tungstate 57 c2dnaA_ not modelled 9.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 58 c3ll4B_ not modelled 9.0 27 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein ykr043c; PDBTitle: structure of the h13a mutant of ykr043c in complex with fructose-1,6-2 bisphosphate 59 d2axtb1 not modelled 8.9 20 Fold:Photosystem II antenna protein-like Superfamily:Photosystem II antenna protein-like Family:Photosystem II antenna protein-like 60 c2i9oA_ not modelled 8.8 22 PDB header:de novo protein Chain: A: PDB Molecule:mhb8a peptide; PDBTitle: design of bivalent miniprotein consisting of two2 independent elements, a b-hairpin peptide and a-helix3 peptide, tethered by eight glycines 61 c1vddC_ not modelled 8.6 39 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 62 c3eehA_ not modelled 8.5 13 PDB header:transferase Chain: A: PDB Molecule:putative light and redox sensing histidine kinase; PDBTitle: the crystal structure of the domain of the putative light and redox2 sensing histidine kinase from haloarcula marismortui 63 d2fh1a3 not modelled 8.4 13 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 64 c3d4iD_ not modelled 7.9 16 PDB header:hydrolase Chain: D: PDB Molecule:sts-2 protein; PDBTitle: crystal structure of the 2h-phosphatase domain of sts-2 65 d1jr3d2 not modelled 7.9 43 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 66 c3q5dA_ not modelled 7.9 5 PDB header:hydrolase Chain: A: PDB Molecule:atlastin-1; PDBTitle: crystal structure of human atlastin-1 (residues 1-447) bound to gdp,2 crystal form 1 67 d1oj4a2 not modelled 7.8 18 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE 68 d1cuoa_ not modelled 7.8 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 69 c1m1jA_ not modelled 7.7 21 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 70 d2axwa1 not modelled 7.5 14 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits 71 c3caxA_ not modelled 7.5 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pf0695; PDBTitle: crystal structure of uncharacterized protein pf0695 72 c2ikqA_ not modelled 7.4 15 PDB header:signaling protein, immune system Chain: A: PDB Molecule:suppressor of t-cell receptor signaling 1; PDBTitle: crystal structure of mouse sts-1 pgm domain in complex with phosphate 73 d1b2pa_ not modelled 7.4 25 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 74 d2ga9d1 not modelled 7.3 21 Fold:Poly(A) polymerase catalytic subunit-like Superfamily:Poly(A) polymerase catalytic subunit-like Family:Poxvirus poly(A) polymerase catalytic subunit-like 75 d1mbya_ not modelled 7.2 29 Fold:Polo-box domain Superfamily:Polo-box domain Family:Swapped Polo-box domain 76 c3knuD_ not modelled 7.1 21 PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum 77 d1x6va1 not modelled 7.1 24 Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain 78 c3quvB_ not modelled 7.0 29 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus 79 d1p9pa_ not modelled 7.0 29 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 80 d1fzta_ not modelled 7.0 18 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 81 d2pp4a1 not modelled 6.9 17 Fold:TAFH domain-like Superfamily:TAFH domain-like Family:TAFH domain-like 82 d2cvba1 not modelled 6.8 33 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 83 d1uala_ not modelled 6.8 36 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 84 d1pvda1 not modelled 6.7 14 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 85 c2hpwA_ not modelled 6.6 26 PDB header:luminescent protein Chain: A: PDB Molecule:green fluorescent protein; PDBTitle: green fluorescent protein from clytia gregaria 86 c2fvnA_ not modelled 6.4 15 PDB header:cell adhesion Chain: A: PDB Molecule:protein afad; PDBTitle: the fibrillar tip complex of the afa/dr adhesins from2 pathogen e. coli displays synergistic binding to 5 1 and v3 3 integrins 87 c2kvcA_ not modelled 6.4 22 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 88 c2kpmA_ not modelled 6.3 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of uncharacterized protein from gene2 locus ne0665 of nitrosomonas europaea. northeast structural3 genomics target ner103a 89 c2c9wA_ not modelled 6.2 33 PDB header:transcription regulation Chain: A: PDB Molecule:suppressor of cytokine signaling 2; PDBTitle: crystal structure of socs-2 in complex with elongin-b and2 elongin-c at 1.9a resolution 90 c3ky7A_ not modelled 6.2 29 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 91 d1sq5a_ not modelled 6.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 92 c2kpqA_ not modelled 6.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of agrobacterium tumefaciens protein atu1219:2 northeast structural genomics consortium target att14 93 d2fe0a1 not modelled 5.8 28 Fold:Smp-1-like Superfamily:Smp-1-like Family:Smp-1-like 94 d1udsa2 not modelled 5.7 30 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 95 c3p3dA_ not modelled 5.6 14 PDB header:nuclear protein Chain: A: PDB Molecule:nucleoporin 53; PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii 96 d2bw0a1 not modelled 5.6 14 Fold:FMT C-terminal domain-like Superfamily:FMT C-terminal domain-like Family:Post formyltransferase domain 97 d1npha2 not modelled 5.5 7 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 98 d1bifa2 not modelled 5.5 29 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain 99 d1vdda_ not modelled 5.4 39 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR