Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP15254
DateThu Jan 5 11:34:41 GMT 2012
Unique Job IDc13b2148b4bcf819

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1t3tA_
Top template information
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase
Confidence and coverage
Confidence:100.0% Coverage: 98%
1275 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLNAPLNDDEHAQLERLLK
Secondary structure 
SS confidence 
Disorder  ?
??
?
?
??
??
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  YGPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQVNRLERGVAYYIEAGTLT
Secondary structure 
SS confidence 
Disorder 
????
?
?
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  NEQWQQVTAELHDRMMETVFFALDDAEQLFAHHQPTPVTSVDLLGQGRQALIDANLRLGL
Secondary structure 
SS confidence 
Disorder 
?
????????????
??
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  ALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCRHKIFNADWVIDGEQQPKSLFKM
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  IKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHETGRYDFHQEPAHILMKVETHNHPT
Secondary structure 
SS confidence 
Disorder 
?
???
??
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  AISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIV
Secondary structure 
SS confidence 
Disorder 
?
?
??
?
??????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  TALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNI
Secondary structure 
SS confidence 
Disorder 
??
??
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  RADHVQKGEINVGAKLVVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDNPEMERR
Secondary structure 
SS confidence 
Disorder 
??
?????
????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  CQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELREILSDEPGMSPL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  EIWCNESQERYVLAVAADQLPLFDELCKRERAPYAVIGEATEELHLSLHDRHFDNQPIDL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  PLDVLLGKTPKMTRDVQTLKAKGDALAREGITIADAVKRVLHLPTVAEKTFLVTIGDRSV
Secondary structure 
SS confidence 
Disorder 
????
?????????????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  TGMVARDQMVGPWQVPVANCAVTTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEAL
Secondary structure 
SS confidence 
Disorder  ?
??
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  TNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  MKTRWQEGNEEREMTSPLSLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGA
Secondary structure 
SS confidence 
Disorder 
?????????
?
Disorder confidence 
 
   .........850.........860.........870.........880.........890.........900
Sequence  TALAQVYRQLGDKPADVRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........910.........920.........930.........940.........950.........960
Sequence  GHCGIDADIATLGDDRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........970.........980.........990.........1000.........1010.........1020
Sequence  GDRFVITANGQTVFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVK
Secondary structure 
SS confidence 
Disorder 
?
??
????
Disorder confidence 
 
   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  LSFDINEDVAAPYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRT
Secondary structure 
SS confidence 
Disorder 
?
??
????
?
Disorder confidence 
 
   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  GLEDFHALVACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQM
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  MSNLRELIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGR
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  VEVRDAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPH
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........1270.........1280.........1290.....
Sequence  PERVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1t3t chain A

3D model

Region: 1 - 1295
Aligned: 1275
Modelled: 1276
Confidence: 100.0%
Identity: 94%
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase

Phyre2

PDB 3ac6 chain A

3D model

Region: 172 - 992
Aligned: 695
Modelled: 726
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2;
PDBTitle: crystal structure of purl from thermus thermophilus

Phyre2

PDB 3d54 chain I

3D model

Region: 186 - 928
Aligned: 567
Modelled: 615
Confidence: 100.0%
Identity: 25%
PDB header:ligase
Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii;
PDBTitle: stucture of purlqs from thermotoga maritima

Phyre2

PDB 2hs0 chain A

3D model

Region: 186 - 928
Aligned: 564
Modelled: 591
Confidence: 100.0%
Identity: 25%
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii;
PDBTitle: t. maritima purl complexed with atp

Phyre2

PDB 1t3t chain A domain 2

3D model

Region: 1034 - 1295
Aligned: 261
Modelled: 262
Confidence: 100.0%
Identity: 94%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 1t3t chain A domain 4

3D model

Region: 221 - 429
Aligned: 209
Modelled: 209
Confidence: 100.0%
Identity: 97%
Fold: Bacillus chorismate mutase-like
Superfamily: PurM N-terminal domain-like
Family: PurM N-terminal domain-like

Phyre2

PDB 1t3t chain A domain 5

3D model

Region: 617 - 816
Aligned: 200
Modelled: 200
Confidence: 100.0%
Identity: 95%
Fold: Bacillus chorismate mutase-like
Superfamily: PurM N-terminal domain-like
Family: PurM N-terminal domain-like

Phyre2

PDB 1t3t chain A domain 7

3D model

Region: 817 - 1033
Aligned: 217
Modelled: 217
Confidence: 100.0%
Identity: 89%
Fold: PurM C-terminal domain-like
Superfamily: PurM C-terminal domain-like
Family: PurM C-terminal domain-like

Phyre2

PDB 1vk3 chain A domain 1

3D model

Region: 186 - 428
Aligned: 165
Modelled: 178
Confidence: 100.0%
Identity: 36%
Fold: Bacillus chorismate mutase-like
Superfamily: PurM N-terminal domain-like
Family: PurM N-terminal domain-like

Phyre2

PDB 1t3t chain A domain 3

3D model

Region: 1 - 152
Aligned: 152
Modelled: 152
Confidence: 100.0%
Identity: 88%
Fold: PurS-like
Superfamily: PurS-like
Family: FGAM synthase PurL, PurS-like domain

Phyre2

PDB 1t3t chain A domain 6

3D model

Region: 431 - 616
Aligned: 167
Modelled: 167
Confidence: 100.0%
Identity: 98%
Fold: PurM C-terminal domain-like
Superfamily: PurM C-terminal domain-like
Family: PurM C-terminal domain-like

Phyre2

PDB 1vk3 chain A domain 2

3D model

Region: 640 - 812
Aligned: 150
Modelled: 173
Confidence: 100.0%
Identity: 18%
Fold: Bacillus chorismate mutase-like
Superfamily: PurM N-terminal domain-like
Family: PurM N-terminal domain-like

Phyre2

PDB 3mcq chain A

3D model

Region: 240 - 595
Aligned: 288
Modelled: 294
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:thiamine-monophosphate kinase;
PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution

Phyre2

PDB 3d54 chain D

3D model

Region: 1039 - 1294
Aligned: 208
Modelled: 236
Confidence: 100.0%
Identity: 30%
PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima

Phyre2

PDB 1vk3 chain A domain 3

3D model

Region: 428 - 613
Aligned: 162
Modelled: 168
Confidence: 100.0%
Identity: 26%
Fold: PurM C-terminal domain-like
Superfamily: PurM C-terminal domain-like
Family: PurM C-terminal domain-like

Phyre2

PDB 2z1e chain A

3D model

Region: 255 - 601
Aligned: 281
Modelled: 298
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form)

Phyre2

PDB 2btu chain B

3D model

Region: 235 - 582
Aligned: 282
Modelled: 299
Confidence: 100.0%
Identity: 18%
PDB header:synthase
Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase;
PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution.

Phyre2

PDB 2yxz chain A

3D model

Region: 238 - 588
Aligned: 278
Modelled: 294
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:thiamin-monophosphate kinase;
PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8

Phyre2

PDB 2rb9 chain D

3D model

Region: 236 - 601
Aligned: 305
Modelled: 321
Confidence: 100.0%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hype protein;
PDBTitle: crystal structure of e.coli hype

Phyre2

PDB 2z1t chain A

3D model

Region: 241 - 601
Aligned: 293
Modelled: 314
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hydrogenase maturation protein hype

Phyre2
1
c1t3tA_
2
c3ac6A_
3
c3d54I_
4
c2hs0A_
5
d1t3ta2
6
d1t3ta4
7
d1t3ta5
8
d1t3ta7
9
d1vk3a1
10
d1t3ta3
11
d1t3ta6
12
d1vk3a2
13
c3mcqA_
14
c3d54D_
15
d1vk3a3
16
c2z1eA_
17
c2btuB_
18
c2yxzA_
19
c2rb9D_
20
c2z1tA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1t3tA_
100.0 94 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase
2c3ac6A_
100.0 24 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2;
PDBTitle: crystal structure of purl from thermus thermophilus
3c3d54I_
100.0 25 PDB header:ligase
Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii;
PDBTitle: stucture of purlqs from thermotoga maritima
4c2hs0A_
100.0 25 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii;
PDBTitle: t. maritima purl complexed with atp
5d1t3ta2
100.0 94 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
6d1t3ta4
100.0 97 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
7d1t3ta5
100.0 95 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
8d1t3ta7
100.0 89 Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
9d1vk3a1
100.0 36 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
10d1t3ta3
100.0 88 Fold:PurS-like
Superfamily:PurS-like
Family:FGAM synthase PurL, PurS-like domain
11d1t3ta6
100.0 98 Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
12d1vk3a2
100.0 18 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
13c3mcqA_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:thiamine-monophosphate kinase;
PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution
14c3d54D_
100.0 30 PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima
15d1vk3a3
100.0 26 Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
16c2z1eA_
100.0 21 PDB header:transferase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form)
17c2btuB_
100.0 18 PDB header:synthase
Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase;
PDBTitle: crystal structure of phosphoribosylformylglycinamidine2 cyclo-ligase from bacillus anthracis at 2.3a resolution.
18c2yxzA_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:thiamin-monophosphate kinase;
PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8
19c2rb9D_
100.0 17 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hype protein;
PDBTitle: crystal structure of e.coli hype
20c2z1tA_
100.0 17 PDB header:lyase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hydrogenase maturation protein hype
21c2zauB_
not modelled 100.0 22 PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase;
PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus
22c2zodB_
not modelled 100.0 21 PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase;
PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus
23c1cliD_
not modelled 100.0 14 PDB header:ligase
Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase);
PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution
24c2v9yA_
not modelled 100.0 18 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: human aminoimidazole ribonucleotide synthetase
25c3m84A_
not modelled 100.0 18 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis
26c3fd5B_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase 1;
PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp
27c2z01A_
not modelled 100.0 20 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus
28c3c9uB_
not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:thiamine monophosphate kinase;
PDBTitle: aathil complexed with adp and tpp
29d1t3ta1
not modelled 99.9 94 Fold:RuvA C-terminal domain-like
Superfamily:FGAM synthase PurL, linker domain
Family:FGAM synthase PurL, linker domain
30c1vqvB_
not modelled 99.9 17 PDB header:transferase
Chain: B: PDB Molecule:thiamine monophosphate kinase;
PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus
31d1clia2
not modelled 99.8 13 Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
32d2z1ea2
not modelled 99.8 21 Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
33d2zoda2
not modelled 99.8 21 Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
34c3mdoB_
not modelled 99.6 18 PDB header:ligase
Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution
35c3fijD_
not modelled 99.6 16 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:lin1909 protein;
PDBTitle: crystal structure of a uncharacterized protein lin1909
36d1ka9h_
not modelled 99.5 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
37d3c9ua2
not modelled 99.5 12 Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
38c1jvnB_
not modelled 99.4 18 PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
39d1jvna2
not modelled 99.3 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
40d2nv0a1
not modelled 99.3 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
41d2abwa1
not modelled 99.3 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
42d1qdlb_
not modelled 99.2 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
43d1clib1
not modelled 99.2 19 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
44d1q7ra_
not modelled 99.2 24 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
45d1k9vf_
not modelled 99.2 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
46c2issF_
not modelled 99.2 20 PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
47c3kizA_
not modelled 99.1 15 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution
48c2ywjA_
not modelled 99.1 22 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii
49c3uowB_
not modelled 99.1 14 PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum
50c2ywdA_
not modelled 99.0 20 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of glutamine amidotransferase
51d1wl8a1
not modelled 99.0 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
52d1clia1
not modelled 98.9 17 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
53d2a9va1
not modelled 98.9 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
54d1gpma2
not modelled 98.9 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
55d1i7qb_
not modelled 98.9 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
56d1vcoa1
not modelled 98.9 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
57d2zaua1
not modelled 98.8 30 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
58c1gpmD_
not modelled 98.8 18 PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
59d2zoda1
not modelled 98.8 11 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
60c2ad5B_
not modelled 98.8 22 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
61c3l7nA_
not modelled 98.7 16 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of smu.1228c
62c1keeH_
not modelled 98.7 11 PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
63d1o1ya_
not modelled 98.7 13 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
64c1l9xA_
not modelled 98.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyl hydrolase;
PDBTitle: structure of gamma-glutamyl hydrolase
65d1l9xa_
not modelled 98.7 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
66c2vpiA_
not modelled 98.6 23 PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
67d1i1qb_
not modelled 98.6 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
68d3c9ua1
not modelled 98.6 11 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
69d1a9xb2
not modelled 98.6 10 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
70c3nvaB_
not modelled 98.6 20 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus
71c1vcnA_
not modelled 98.6 18 PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion
72c3tqiB_
not modelled 98.6 18 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii
73c2ywcC_
not modelled 98.5 22 PDB header:ligase
Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp
74d1s1ma1
not modelled 98.5 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
75c3l83A_
not modelled 98.4 12 PDB header:transferase
Chain: A: PDB Molecule:glutamine amido transferase;
PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus
76c3cneD_
not modelled 98.4 25 PDB header:hydrolase
Chain: D: PDB Molecule:putative protease i;
PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron
77d2z1ea1
not modelled 98.4 16 Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
78c2vxoB_
not modelled 98.4 19 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp
79d1sy7a1
not modelled 98.3 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
80c1sy7B_
not modelled 98.3 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:catalase 1;
PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution.
81c3fseB_
not modelled 98.2 25 PDB header:hydrolase
Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and
PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution
82d1oi4a1
not modelled 98.1 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
83c2w7tA_
not modelled 98.1 19 PDB header:ligase
Chain: A: PDB Molecule:putative cytidine triphosphate synthase;
PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin
84d1p80a1
not modelled 98.0 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
85d1g2ia_
not modelled 98.0 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
86d1p5fa_
not modelled 97.8 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
87c2v4uA_
not modelled 97.8 18 PDB header:ligase
Chain: A: PDB Molecule:ctp synthase 2;
PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine
88c3uk7B_
not modelled 97.8 18 PDB header:transferase
Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing
PDBTitle: crystal structure of arabidopsis thaliana dj-1d
89d2ghra1
not modelled 97.7 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:HTS-like
90d1vhqa_
not modelled 97.6 11 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
91c3ot1B_
not modelled 97.6 21 PDB header:structural genomics
Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate
PDBTitle: crystal structure of vc2308 protein
92c3kklA_
not modelled 97.5 12 PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
93c3ewnA_
not modelled 97.4 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thij/pfpi family protein;
PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae
94c3nooB_
not modelled 97.4 14 PDB header:lyase
Chain: B: PDB Molecule:thij/pfpi family protein;
PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens
95d2ab0a1
not modelled 97.3 12 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
96c3n7tA_
not modelled 97.3 23 PDB header:protein binding
Chain: A: PDB Molecule:macrophage binding protein;
PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis
97c3r74B_
not modelled 97.3 12 PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
98c3f5dA_
not modelled 97.2 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ydea;
PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis
99d2fexa1
not modelled 97.1 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
100d1qvwa_
not modelled 97.1 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
101c3l3bA_
not modelled 97.0 20 PDB header:biosynthetic protein
Chain: A: PDB Molecule:es1 family protein;
PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution
102c2vrnA_
not modelled 96.8 20 PDB header:hydrolase
Chain: A: PDB Molecule:protease i;
PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily
103c2h2wA_
not modelled 96.8 15 PDB header:transferase
Chain: A: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution
104c3efeC_
not modelled 96.8 22 PDB header:chaperone
Chain: C: PDB Molecule:thij/pfpi family protein;
PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis
105c3mgkA_
not modelled 96.6 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:intracellular protease/amidase related enzyme
PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824
106c2yx5A_
not modelled 96.3 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0062 protein mj1593;
PDBTitle: crystal structure of methanocaldococcus jannaschii purs, one of the2 subunits of formylglycinamide ribonucleotide amidotransferase in the3 purine biosynthetic pathway
107d1vq3a_
not modelled 96.2 17 Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
108c3bhnA_
not modelled 96.1 13 PDB header:unknown function
Chain: A: PDB Molecule:thij/pfpi domain protein;
PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution
109c2zw2B_
not modelled 95.9 14 PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein sts178;
PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs)
110d1n57a_
not modelled 95.9 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
111d1t4aa_
not modelled 95.8 14 Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
112c1p81A_
not modelled 95.7 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli
113c3er6D_
not modelled 95.7 16 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative transcriptional regulator protein;
PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus
114d1u9ca_
not modelled 95.6 13 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
115d1gtda_
not modelled 95.4 13 Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
116c2dgbA_
not modelled 95.2 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein purs;
PDBTitle: structure of thermus thermophilus purs in the p21 form
117c3graA_
not modelled 94.6 18 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, arac family;
PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida
118c3l4eA_
not modelled 93.3 14 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
119d1fyea_
not modelled 75.6 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Aspartyl dipeptidase PepE
120d1sgva1
not modelled 73.3 25 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0