Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	V	L	I	F	L	G	C	L	L	G	G	I	A	I	G	L	P	I	A	W	A	L	L	L	C	G	A	A	L	M	F	W	L	D	M	F	D	V	Q	I	M	A	Q	T	L	V	N	G	A	D	S	F	S	L	L	A	I	P
Secondary structure
SS confidence
Disorder		?																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	F	V	L	A	G	E	I	M	N	A	G	G	L	S	K	R	I	V	D	L	P	M	K	L	V	G	H	K	P	G	G	L	G	Y	V	G	V	L	A	A	M	I	M	A	S	L	S	G	S	A	V	A	D	T	A	A	V	A	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	L	V	P	M	M	R	S	A	N	Y	P	V	N	R	A	A	G	L	I	A	S	G	G	I	I	A	P	I	I	P	P	S	I	P	F	I	I	F	G	V	S	S	G	L	S	I	S	K	L	F	M	A	G	I	A	P	G	M	M
Secondary structure
SS confidence
Disorder										?																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	G	A	T	L	M	L	T	W	W	W	Q	A	S	R	L	N	L	P	R	Q	Q	K	A	T	M	Q	E	I	W	H	S	F	V	S	G	I	W	A	L	F	L	P	V	I	I	I	G	G	F	R	S	G	L	F	T	P	T	E	A
Secondary structure
SS confidence
Disorder																	?				?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	A	V	A	A	F	Y	A	L	F	V	A	T	V	I	Y	R	E	M	T	F	A	T	L	W	H	V	L	I	G	A	A	K	T	T	S	V	V	M	F	L	V	A	S	A	Q	V	S	A	W	L	I	T	I	A	E	L	P	M	M
Secondary structure
SS confidence
Disorder																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		V	S	D	L	L	Q	P	L	V	D	S	P	R	L	L	F	I	V	I	M	V	A	I	L	I	V	G	M	V	M	D	L	T	P	T	V	L	I	L	T	P	V	L	M	P	L	V	K	E	A	G	I	D	P	I	Y	F	G	V	M
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		F	I	I	N	C	S	I	G	L	I	T	P	P	I	G	N	V	L	N	V	I	S	G	V	A	K	L	K	F	D	D	A	V	R	G	V	F	P	Y	V	L	V	L	Y	S	L	L	V	V	F	V	F	I	P	D	L	I	I	L	P
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.
Sequence		L	K	W	I	N
Secondary structure
SS confidence
Disorder				?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qnq chain D Region: 78 - 208 Aligned: 131 Modelled: 131 Confidence: 51.8% Identity: 7% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 1y5i chain C domain 1 Region: 166 - 307 Aligned: 142 Modelled: 142 Confidence: 30.0% Identity: 11% Fold: Heme-binding four-helical bundle Superfamily: Respiratory nitrate reductase 1 gamma chain Family: Respiratory nitrate reductase 1 gamma chain Phyre2 PDB 1fft chain B domain 2 Region: 170 - 236 Aligned: 67 Modelled: 67 Confidence: 18.7% Identity: 10% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 PDB 2w8a chain C Region: 27 - 218 Aligned: 180 Modelled: 191 Confidence: 17.8% Identity: 13% PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Phyre2 PDB 2bbj chain B Region: 155 - 197 Aligned: 40 Modelled: 43 Confidence: 17.4% Identity: 8% PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter Phyre2 PDB 2knc chain A Region: 164 - 209 Aligned: 46 Modelled: 46 Confidence: 14.0% Identity: 9% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 2rdd chain B Region: 174 - 202 Aligned: 29 Modelled: 29 Confidence: 13.4% Identity: 7% PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. Phyre2 PDB 2xq2 chain A Region: 10 - 256 Aligned: 234 Modelled: 234 Confidence: 13.2% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Phyre2 PDB 2xut chain C Region: 63 - 219 Aligned: 157 Modelled: 157 Confidence: 13.0% Identity: 4% PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Phyre2 PDB 2oar chain A domain 1 Region: 165 - 210 Aligned: 46 Modelled: 46 Confidence: 12.6% Identity: 11% Fold: Gated mechanosensitive channel Superfamily: Gated mechanosensitive channel Family: Gated mechanosensitive channel Phyre2 PDB 2jln chain A Region: 174 - 212 Aligned: 39 Modelled: 39 Confidence: 12.2% Identity: 8% PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Phyre2 PDB 1j4n chain A Region: 134 - 206 Aligned: 73 Modelled: 73 Confidence: 12.1% Identity: 7% Fold: Aquaporin-like Superfamily: Aquaporin-like Family: Aquaporin-like Phyre2 PDB 1u5t chain A domain 1 Region: 343 - 356 Aligned: 14 Modelled: 14 Confidence: 12.1% Identity: 36% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Vacuolar sorting protein domain Phyre2 PDB 3mk7 chain F Region: 170 - 235 Aligned: 66 Modelled: 66 Confidence: 11.8% Identity: 8% PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase Phyre2 PDB 3ehb chain B domain 2 Region: 167 - 236 Aligned: 70 Modelled: 70 Confidence: 10.8% Identity: 13% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 PDB 1vry chain A Region: 18 - 70 Aligned: 51 Modelled: 53 Confidence: 10.4% Identity: 12% PDB header:membrane protein Chain: A: PDB Molecule:glycine receptor alpha-1 chain; PDBTitle: second and third transmembrane domains of the alpha-12 subunit of human glycine receptor Phyre2 PDB 1m57 chain H Region: 167 - 233 Aligned: 67 Modelled: 67 Confidence: 9.9% Identity: 12% PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) Phyre2 PDB 3dtu chain B domain 2 Region: 167 - 236 Aligned: 70 Modelled: 70 Confidence: 9.6% Identity: 11% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 PDB 1ymg chain A Region: 103 - 207 Aligned: 105 Modelled: 105 Confidence: 9.0% Identity: 9% PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution Phyre2 PDB 1ymg chain A domain 1 Region: 103 - 207 Aligned: 105 Modelled: 105 Confidence: 9.0% Identity: 9% Fold: Aquaporin-like Superfamily: Aquaporin-like Family: Aquaporin-like Phyre2 1 c3qnqD_ 2 d1y5ic1 3 d1fftb2 4 c2w8aC_ 5 c2bbjB_ 6 c2kncA_ 7 c2rddB_ 8 c2xq2A_ 9 c2xutC_ 10 d2oara1 11 c2jlnA_ 12 d1j4na_ 13 d1u5ta1 14 c3mk7F_ 15 d3ehbb2 16 c1vryA_ 17 c1m57H_ 18 d3dtub2 19 c1ymgA_ 20 d1ymga1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qnqD_ 51.8 7 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 2 d1y5ic1 30.0 11 Fold:Heme-binding four-helical bundle Superfamily:Respiratory nitrate reductase 1 gamma chain Family:Respiratory nitrate reductase 1 gamma chain 3 d1fftb2 18.7 10 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 4 c2w8aC_ 17.8 13 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 5 c2bbjB_ 17.4 8 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 6 c2kncA_ 14.0 9 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 7 c2rddB_ 13.4 7 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 8 c2xq2A_ 13.2 10 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 9 c2xutC_ 13.0 4 PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. 10 d2oara1 12.6 11 Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel 11 c2jlnA_ 12.2 8 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 12 d1j4na_ 12.1 7 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 13 d1u5ta1 12.1 36 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 14 c3mk7F_ 11.8 8 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 15 d3ehbb2 10.8 13 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 16 c1vryA_ 10.4 12 PDB header:membrane protein Chain: A: PDB Molecule:glycine receptor alpha-1 chain; PDBTitle: second and third transmembrane domains of the alpha-12 subunit of human glycine receptor 17 c1m57H_ 9.9 12 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 18 d3dtub2 9.6 11 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 19 c1ymgA_ 9.0 9 PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution 20 d1ymga1 9.0 9 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 21 c1fftG_ not modelled 8.9 12 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 22 c2kncB_ not modelled 8.8 16 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 23 d1bg6a1 not modelled 8.8 21 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:N-(1-D-carboxylethyl)-L-norvaline dehydrogenase 24 d1o82a_ not modelled 8.7 22 Fold:Saposin-like Superfamily:Bacteriocin AS-48 Family:Bacteriocin AS-48 25 c1qleB_ not modelled 8.5 13 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 26 c1ar1B_ not modelled 8.5 13 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 27 c3cuqA_ not modelled 8.5 23 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 28 c1u5tA_ not modelled 8.3 36 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 29 c2zmeA_ not modelled 8.1 23 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 30 c3si5X_ not modelled 8.1 30 PDB header:cell cycle Chain: X: PDB Molecule:protein casc5; PDBTitle: kinetochore-bubr1 kinase complex 31 c3si5Y_ not modelled 7.9 30 PDB header:cell cycle Chain: Y: PDB Molecule:protein casc5; PDBTitle: kinetochore-bubr1 kinase complex 32 d1mmsa2 not modelled 7.8 19 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 33 d2d6fc1 not modelled 7.7 33 Fold:GatB/YqeY motif Superfamily:GatB/YqeY motif Family:GatB/GatE C-terminal domain-like 34 d3cjsb1 not modelled 7.6 24 Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain 35 d1rc2a_ not modelled 7.5 10 Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like 36 c2oarA_ not modelled 7.4 4 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) 37 c2ksfA_ not modelled 7.2 15 PDB header:transferase Chain: A: PDB Molecule:sensor protein kdpd; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor kdpd, center for structures of3 membrane proteins (csmp) target 4312c 38 d2iuba2 not modelled 7.2 4 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 39 d1eysh2 not modelled 7.1 20 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 40 c3rkoM_ not modelled 7.0 8 PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 41 c3cjtP_ not modelled 6.9 24 PDB header:transferase/ribosomal protein Chain: P: PDB Molecule:50s ribosomal protein l11; PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11 42 c2l2tA_ not modelled 6.8 21 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 43 c3ke2A_ not modelled 6.8 9 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution 44 d2a65a1 not modelled 6.7 9 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 45 d1tm9a_ not modelled 6.6 14 Fold:Hypothetical protein MG354 Superfamily:Hypothetical protein MG354 Family:Hypothetical protein MG354 46 c1c9bI_ not modelled 6.4 22 PDB header:transcription/dna Chain: I: PDB Molecule:general transcription factor iib; PDBTitle: crystal structure of a human tbp core domain-human tfiib2 core domain complex bound to an extended, modified3 adenoviral major late promoter (admlp) 47 c1s5rA_ not modelled 6.3 31 PDB header:transcription Chain: A: PDB Molecule:high mobility group box transcription factor 1; PDBTitle: solution structure of hbp1 sid-msin3a pah2 complex 48 d2vv5a3 not modelled 6.2 5 Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region 49 d2csba3 not modelled 6.2 13 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 50 c3gdzA_ not modelled 6.1 17 PDB header:ligase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of arginyl-trna synthetase from klebsiella2 pneumoniae subsp. pneumoniae 51 c3kl4B_ not modelled 6.1 15 PDB header:hydrolase Chain: B: PDB Molecule:signal peptide of yeast dipeptidyl aminopeptidase b; PDBTitle: recognition of a signal peptide by the signal recognition particle 52 c1ponB_ not modelled 6.0 18 PDB header:calcium-binding protein Chain: B: PDB Molecule:troponin c; PDBTitle: site iii-site iv troponin c heterodimer, nmr 53 c3rfrI_ not modelled 5.9 3 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 54 c2kluA_ not modelled 5.8 9 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 55 d2h8aa1 not modelled 5.7 14 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 56 c2k6oA_ not modelled 5.6 27 PDB header:antimicrobial protein Chain: A: PDB Molecule:cathelicidin antimicrobial peptide; PDBTitle: human ll-37 structure 57 d2pp6a1 not modelled 5.6 24 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like 58 c1tr8A_ not modelled 5.6 19 PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) 59 d1nera_ not modelled 5.5 8 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 60 d1vola2 not modelled 5.5 22 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 61 d2bnma1 not modelled 5.4 41 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 62 d1rzsa_ not modelled 5.4 23 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 63 c1s6cB_ not modelled 5.4 0 PDB header:transport protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily d member 2; PDBTitle: crystal structure of the complex between kchip1 and kv4.2 n1-30 64 c1yewC_ not modelled 5.4 10 PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase 65 c2dalA_ not modelled 5.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein kiaa0794; PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human fas associated factor 1 protein 66 d1gyxa_ not modelled 5.3 17 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 67 c2op8A_ not modelled 5.3 8 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 68 d1v92a_ not modelled 5.2 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like 69 d1khia2 not modelled 5.2 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 70 d1xmta_ not modelled 5.2 10 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 71 c3rgbA_ not modelled 5.2 4 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 72 d1dwka1 not modelled 5.2 5 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Cyanase N-terminal domain 73 c2vv5D_ not modelled 5.1 8 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 74 d1qd1a2 not modelled 5.1 17 Fold:Ferredoxin-like Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase. 75 c2jp3A_ not modelled 5.1 7 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 76 c1kftA_ not modelled 5.1 19 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 77 d1kfta_ not modelled 5.1 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 78 c2g9pA_ not modelled 5.1 25 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom 79 c2bg9C_ not modelled 5.1 13 PDB header:ion channel/receptor Chain: C: PDB Molecule:acetylcholine receptor protein, delta chain; PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution. 80 c1bvyF_ not modelled 5.0 10 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0