08/01/2012 09:10:28 : INFO  : Run start: Sun Jan  8 09:10:27 GMT 2012
08/01/2012 09:10:36 : INFO  : Initialised job
08/01/2012 09:10:39 : INFO  : Renaming log file 'phyre2_20120108_091026.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c134bca4058c2675/phyre_20120108_091026.log'
08/01/2012 09:10:40 : INFO  : Initialised job:
Sequence
>batch____
MAVLIFLGCLLGGIAIGLPIAWALLLCGAALMFWLDMFDVQIMAQTLVNGADSFSLLAIP
FFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAMIMASLSGSAVADTAAVAA
LLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFGVSSGLSISKLFMAGIAPGMM
MGATLMLTWWWQASRLNLPRQQKATMQEIWHSFVSGIWALFLPVIIIGGFRSGLFTPTEA
GAVAAFYALFVATVIYREMTFATLWHVLIGAAKTTSVVMFLVASAQVSAWLITIAELPMM
VSDLLQPLVDSPRLLFIVIMVAILIVGMVMDLTPTVLILTPVLMPLVKEAGIDPIYFGVM
FIINCSIGLITPPIGNVLNVISGVAKLKFDDAVRGVFPYVLVLYSLLVVFVFIPDLIILP
LKWIN

08/01/2012 09:10:42 : INFO  : Checked sequence
08/01/2012 09:10:48 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 09:10:50 : INFO  : PSI-BLAST 3 iterations
08/01/2012 09:14:09 : INFO  : PSI-BLAST 5 iterations
08/01/2012 09:18:18 : INFO  : Finished PSI-BLAST
08/01/2012 09:18:21 : INFO  : Running Buildali to generate a3m file
08/01/2012 09:38:17 : INFO  : Converting to HMM
08/01/2012 09:38:24 : INFO  : Calibrating HMM
08/01/2012 09:38:44 : INFO  : Searching HMM database
08/01/2012 09:46:01 : INFO  : Finished buildali
08/01/2012 09:46:04 : INFO  : Predicting secondary structure
08/01/2012 09:46:17 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 09:46:19 : INFO  : Predicting Disordered regions
08/01/2012 09:46:26 : INFO  : Predicted Disorder (Disopred)
08/01/2012 09:46:29 : INFO  : Running memsat_svm check
08/01/2012 09:50:33 : INFO  : Running memsat_svm full
08/01/2012 09:54:22 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c134bca4058c2675'
08/01/2012 09:54:25 : INFO  : Initialising fold library search
08/01/2012 09:54:30 : INFO  : Initialised search input
08/01/2012 09:54:34 : INFO  : Building Ensemble models
08/01/2012 09:54:39 : INFO  : Building hh.c3qnqD_.model.1.pdb
08/01/2012 09:55:04 : INFO  : Building c3qnqD_.1.pdb
08/01/2012 09:55:27 : INFO  : Building d1y5ic1.2.pdb
08/01/2012 09:55:51 : INFO  : Building d1fftb2.3.pdb
08/01/2012 09:56:09 : INFO  : Building c2w8aC_.4.pdb
08/01/2012 09:56:32 : INFO  : Building c2bbjB_.5.pdb
08/01/2012 09:56:55 : INFO  : Building c2kncA_.6.pdb
08/01/2012 09:57:18 : INFO  : Building c2rddB_.7.pdb
08/01/2012 09:57:41 : INFO  : Building c2xq2A_.8.pdb
08/01/2012 09:58:04 : INFO  : Building c2xutC_.9.pdb
08/01/2012 09:58:27 : INFO  : Building d2oara1.10.pdb
08/01/2012 09:58:50 : INFO  : Building c2jlnA_.11.pdb
08/01/2012 09:59:14 : INFO  : Building d1j4na_.12.pdb
08/01/2012 09:59:37 : INFO  : Building d1u5ta1.13.pdb
08/01/2012 10:00:01 : INFO  : Building c3mk7F_.14.pdb
08/01/2012 10:00:25 : INFO  : Building d3ehbb2.15.pdb
08/01/2012 10:00:49 : INFO  : Building c1vryA_.16.pdb
08/01/2012 10:01:11 : INFO  : Building c1m57H_.17.pdb
08/01/2012 10:01:35 : INFO  : Building d3dtub2.18.pdb
08/01/2012 10:01:57 : INFO  : Building c1ymgA_.19.pdb
08/01/2012 10:02:20 : INFO  : Building d1ymga1.20.pdb
08/01/2012 10:03:09 : INFO  : Finished HH model building
08/01/2012 10:03:13 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 10:04:51 : INFO  : html domain output complete ID 'c134bca4058c2675'
08/01/2012 10:18:27 : INFO  : Run end  : Sun Jan  8 10:18:26 GMT 2012
