Phyre 2 Results for P37675

Email | l.a.kelley@imperial.ac.uk
Description | P37675
Date | Thu Jan 5 11:56:49 GMT 2012
Unique Job ID | c134bca4058c2675

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3qnqD_ |
|  | 51.8 | 7 | PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
2 | d1y5ic1 |
|  | 30.0 | 11 | Fold:Heme-binding four-helical bundle Superfamily:Respiratory nitrate reductase 1 gamma chain Family:Respiratory nitrate reductase 1 gamma chain
3 | d1fftb2 |
|  | 18.7 | 10 | Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region
4 | c2w8aC_ |
|  | 17.8 | 13 | PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
5 | c2bbjB_ |
|  | 17.4 | 8 | PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter
6 | c2kncA_ |
|  | 14.0 | 9 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
7 | c2rddB_ |
|  | 13.4 | 7 | PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
8 | c2xq2A_ |
|  | 13.2 | 10 | PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt
9 | c2xutC_ |
|  | 13.0 | 4 | PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.
10 | d2oara1 |
|  | 12.6 | 11 | Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel
11 | c2jlnA_ |
|  | 12.2 | 8 | PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
12 | d1j4na_ |
|  | 12.1 | 7 | Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like
13 | d1u5ta1 |
|  | 12.1 | 36 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain
14 | c3mk7F_ |
|  | 11.8 | 8 | PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase
15 | d3ehbb2 |
|  | 10.8 | 13 | Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region
16 | c1vryA_ |
|  | 10.4 | 12 | PDB header:membrane protein Chain: A: PDB Molecule:glycine receptor alpha-1 chain; PDBTitle: second and third transmembrane domains of the alpha-12 subunit of human glycine receptor
17 | c1m57H_ |
|  | 9.9 | 12 | PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
18 | d3dtub2 |
|  | 9.6 | 11 | Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region
19 | c1ymgA_ |
|  | 9.0 | 9 | PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution
20 | d1ymga1 |
|  | 9.0 | 9 | Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like
21 | c1fftG_ |
| not modelled | 8.9 | 12 | PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli
22 | c2kncB_ |
| not modelled | 8.8 | 16 | PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
23 | d1bg6a1 |
| not modelled | 8.8 | 21 | Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
24 | d1o82a_ |
| not modelled | 8.7 | 22 | Fold:Saposin-like Superfamily:Bacteriocin AS-48 Family:Bacteriocin AS-48
25 | c1qleB_ |
| not modelled | 8.5 | 13 | PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment
26 | c1ar1B_ |
| not modelled | 8.5 | 13 | PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment
27 | c3cuqA_ |
| not modelled | 8.5 | 23 | PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
28 | c1u5tA_ |
| not modelled | 8.3 | 36 | PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex
29 | c2zmeA_ |
| not modelled | 8.1 | 23 | PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
30 | c3si5X_ |
| not modelled | 8.1 | 30 | PDB header:cell cycle Chain: X: PDB Molecule:protein casc5; PDBTitle: kinetochore-bubr1 kinase complex
31 | c3si5Y_ |
| not modelled | 7.9 | 30 | PDB header:cell cycle Chain: Y: PDB Molecule:protein casc5; PDBTitle: kinetochore-bubr1 kinase complex
32 | d1mmsa2 |
| not modelled | 7.8 | 19 | Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain
33 | d2d6fc1 |
| not modelled | 7.7 | 33 | Fold:GatB/YqeY motif Superfamily:GatB/YqeY motif Family:GatB/GatE C-terminal domain-like
34 | d3cjsb1 |
| not modelled | 7.6 | 24 | Fold:Ribosomal L11/L12e N-terminal domain Superfamily:Ribosomal L11/L12e N-terminal domain Family:Ribosomal L11/L12e N-terminal domain
35 | d1rc2a_ |
| not modelled | 7.5 | 10 | Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like
36 | c2oarA_ |
| not modelled | 7.4 | 4 | PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl)
37 | c2ksfA_ |
| not modelled | 7.2 | 15 | PDB header:transferase Chain: A: PDB Molecule:sensor protein kdpd; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor kdpd, center for structures of3 membrane proteins (csmp) target 4312c
38 | d2iuba2 |
| not modelled | 7.2 | 4 | Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region
39 | d1eysh2 |
| not modelled | 7.1 | 20 | Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region
40 | c3rkoM_ |
| not modelled | 7.0 | 8 | PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
41 | c3cjtP_ |
| not modelled | 6.9 | 24 | PDB header:transferase/ribosomal protein Chain: P: PDB Molecule:50s ribosomal protein l11; PDBTitle: ribosomal protein l11 methyltransferase (prma) in complex with2 dimethylated ribosomal protein l11
42 | c2l2tA_ |
| not modelled | 6.8 | 21 | PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain
43 | c3ke2A_ |
| not modelled | 6.8 | 9 | PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution
44 | d2a65a1 |
| not modelled | 6.7 | 9 | Fold:SNF-like Superfamily:SNF-like Family:SNF-like
45 | d1tm9a_ |
| not modelled | 6.6 | 14 | Fold:Hypothetical protein MG354 Superfamily:Hypothetical protein MG354 Family:Hypothetical protein MG354
46 | c1c9bI_ |
| not modelled | 6.4 | 22 | PDB header:transcription/dna Chain: I: PDB Molecule:general transcription factor iib; PDBTitle: crystal structure of a human tbp core domain-human tfiib2 core domain complex bound to an extended, modified3 adenoviral major late promoter (admlp)
47 | c1s5rA_ |
| not modelled | 6.3 | 31 | PDB header:transcription Chain: A: PDB Molecule:high mobility group box transcription factor 1; PDBTitle: solution structure of hbp1 sid-msin3a pah2 complex
48 | d2vv5a3 |
| not modelled | 6.2 | 5 | Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region
49 | d2csba3 |
| not modelled | 6.2 | 13 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain
50 | c3gdzA_ |
| not modelled | 6.1 | 17 | PDB header:ligase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of arginyl-trna synthetase from klebsiella2 pneumoniae subsp. pneumoniae
51 | c3kl4B_ |
| not modelled | 6.1 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:signal peptide of yeast dipeptidyl aminopeptidase b; PDBTitle: recognition of a signal peptide by the signal recognition particle
52 | c1ponB_ |
| not modelled | 6.0 | 18 | PDB header:calcium-binding protein Chain: B: PDB Molecule:troponin c; PDBTitle: site iii-site iv troponin c heterodimer, nmr
53 | c3rfrI_ |
| not modelled | 5.9 | 3 | PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
54 | c2kluA_ |
| not modelled | 5.8 | 9 | PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
55 | d2h8aa1 |
| not modelled | 5.7 | 14 | Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain
56 | c2k6oA_ |
| not modelled | 5.6 | 27 | PDB header:antimicrobial protein Chain: A: PDB Molecule:cathelicidin antimicrobial peptide; PDBTitle: human ll-37 structure
57 | d2pp6a1 |
| not modelled | 5.6 | 24 | Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like
58 | c1tr8A_ |
| not modelled | 5.6 | 19 | PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac)
59 | d1nera_ |
| not modelled | 5.5 | 8 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
60 | d1vola2 |
| not modelled | 5.5 | 22 | Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain
61 | d2bnma1 |
| not modelled | 5.4 | 41 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like
62 | d1rzsa_ |
| not modelled | 5.4 | 23 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
63 | c1s6cB_ |
| not modelled | 5.4 | 0 | PDB header:transport protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily d member 2; PDBTitle: crystal structure of the complex between kchip1 and kv4.2 n1-30
64 | c1yewC_ |
| not modelled | 5.4 | 10 | PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase
65 | c2dalA_ |
| not modelled | 5.4 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein kiaa0794; PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human fas associated factor 1 protein
66 | d1gyxa_ |
| not modelled | 5.3 | 17 | Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like
67 | c2op8A_ |
| not modelled | 5.3 | 8 | PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
68 | d1v92a_ |
| not modelled | 5.2 | 13 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TAP-C domain-like
69 | d1khia2 |
| not modelled | 5.2 | 14 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
70 | d1xmta_ |
| not modelled | 5.2 | 10 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
71 | c3rgbA_ |
| not modelled | 5.2 | 4 | PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
72 | d1dwka1 |
| not modelled | 5.2 | 5 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Cyanase N-terminal domain
73 | c2vv5D_ |
| not modelled | 5.1 | 8 | PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs
74 | d1qd1a2 |
| not modelled | 5.1 | 17 | Fold:Ferredoxin-like Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
75 | c2jp3A_ |
| not modelled | 5.1 | 7 | PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
76 | c1kftA_ |
| not modelled | 5.1 | 19 | PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
77 | d1kfta_ |
| not modelled | 5.1 | 19 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain
78 | c2g9pA_ |
| not modelled | 5.1 | 25 | PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
79 | c2bg9C_ |
| not modelled | 5.1 | 13 | PDB header:ion channel/receptor Chain: C: PDB Molecule:acetylcholine receptor protein, delta chain; PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
80 | c1bvyF_ |
| not modelled | 5.0 | 10 | PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)