Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	Q	K	Q	I	E	E	I	V	R	S	V	M	A	S	M	G	Q	A	A	P	A	P	S	E	A	K	C	A	T	T	N	C	A	A	P	V	T	S	E	S	C	A	L	D	L	G	S	A	E	A	K	A	W	I	G	V	E	N
Secondary structure
SS confidence
Disorder		?	?																	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	H	R	A	D	V	L	T	E	L	R	R	S	T	V	A	R	V	C	T	G	R	A	G	P	R	P	R	T	Q	A	L	L	R	F	L	A	D	H	S	R	S	K	D	T	V	L	K	E	V	P	E	E	W	V	K	A	Q	G	L
Secondary structure
SS confidence
Disorder																																																									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	E	V	R	S	E	I	S	D	K	N	L	Y	L	T	R	P	D	M	G	R	R	L	C	A	E	A	V	E	A	L	K	A	Q	C	V	A	N	P	D	V	Q	V	V	I	S	D	G	L	S	T	D	A	I	T	V	N	Y	E	E
Secondary structure
SS confidence
Disorder						?																													?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	L	P	P	L	M	A	G	L	K	Q	A	G	L	K	V	G	T	P	F	F	V	R	Y	G	R	V	K	I	E	D	Q	I	G	E	I	L	G	A	K	V	V	I	L	L	V	G	E	R	P	G	L	G	Q	S	E	S	L	S	C
Secondary structure
SS confidence
Disorder													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Sequence		Y	A	V	Y	S	P	R	M	A	T	T	V	E	A	D	R	T	C	I	S	N	I	H	Q	G	G	T	P	P	V	E	A	A	A	V	I	V	D	L	A	K	R	M	L	E	Q	K	A	S	G	I	N	M	T	R
Secondary structure
SS confidence
Disorder																										?																					?			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3abs chain D Region: 44 - 295 Aligned: 252 Modelled: 252 Confidence: 100.0% Identity: 100% PDB header:lyase Chain: D: PDB Molecule:ethanolamine ammonia-lyase light chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with adeninylpentylcobalamin and ethanolamine Phyre2 PDB 3any chain B Region: 44 - 295 Aligned: 252 Modelled: 252 Confidence: 100.0% Identity: 100% PDB header:lyase Chain: B: PDB Molecule:ethanolamine ammonia-lyase light chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and (r)-2-amino-1-propanol Phyre2 PDB 2e5c chain A Region: 136 - 201 Aligned: 58 Modelled: 58 Confidence: 75.7% Identity: 28% PDB header:transferase Chain: A: PDB Molecule:nicotinamide phosphoribosyltransferase; PDBTitle: crystal structure of human nmprtase complexed with 5'-phosphoribosyl-2 1'-pyrophosphate Phyre2 PDB 2f7f chain A domain 1 Region: 136 - 176 Aligned: 39 Modelled: 41 Confidence: 55.6% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like Family: NadC C-terminal domain-like Phyre2 PDB 2i14 chain B Region: 136 - 176 Aligned: 39 Modelled: 41 Confidence: 51.5% Identity: 33% PDB header:transferase Chain: B: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide2 pyrophosphorylase from pyrococcus furiosus Phyre2 PDB 1yir chain A domain 1 Region: 136 - 176 Aligned: 41 Modelled: 41 Confidence: 50.4% Identity: 20% Fold: TIM beta/alpha-barrel Superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like Family: Monomeric nicotinate phosphoribosyltransferase C-terminal domain Phyre2 PDB 1dys chain A Region: 179 - 258 Aligned: 73 Modelled: 80 Confidence: 49.6% Identity: 18% Fold: 7-stranded beta/alpha barrel Superfamily: Glycosyl hydrolases family 6, cellulases Family: Glycosyl hydrolases family 6, cellulases Phyre2 PDB 1yir chain A Region: 136 - 176 Aligned: 41 Modelled: 41 Confidence: 46.1% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase 2; PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase Phyre2 PDB 2huh chain A domain 1 Region: 228 - 246 Aligned: 16 Modelled: 19 Confidence: 44.4% Identity: 38% Fold: C2 domain-like Superfamily: Smr-associated domain-like Family: Smr-associated domain Phyre2 PDB 3bgs chain A domain 1 Region: 145 - 170 Aligned: 26 Modelled: 26 Confidence: 43.7% Identity: 23% Fold: Phosphorylase/hydrolase-like Superfamily: Purine and uridine phosphorylases Family: Purine and uridine phosphorylases Phyre2 PDB 2i14 chain A domain 1 Region: 136 - 176 Aligned: 39 Modelled: 41 Confidence: 43.4% Identity: 31% Fold: TIM beta/alpha-barrel Superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like Family: NadC C-terminal domain-like Phyre2 PDB 3pnp chain A Region: 145 - 170 Aligned: 26 Modelled: 26 Confidence: 42.0% Identity: 23% Fold: Phosphorylase/hydrolase-like Superfamily: Purine and uridine phosphorylases Family: Purine and uridine phosphorylases Phyre2 PDB 3os4 chain A Region: 136 - 176 Aligned: 41 Modelled: 41 Confidence: 41.2% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: the crystal structure of nicotinate phosphoribosyltransferase from2 yersinia pestis Phyre2 PDB 1ytd chain A domain 1 Region: 136 - 176 Aligned: 39 Modelled: 41 Confidence: 36.8% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like Family: NadC C-terminal domain-like Phyre2 PDB 3ggs chain A Region: 145 - 170 Aligned: 26 Modelled: 26 Confidence: 36.3% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: human purine nucleoside phosphorylase double mutant e201q,n243d2 complexed with 2-fluoro-2'-deoxyadenosine Phyre2 PDB 2p4s chain A Region: 145 - 173 Aligned: 29 Modelled: 29 Confidence: 35.9% Identity: 28% PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: structure of purine nucleoside phosphorylase from anopheles gambiae in2 complex with dadme-immh Phyre2 PDB 1qjw chain A Region: 179 - 258 Aligned: 74 Modelled: 80 Confidence: 34.0% Identity: 22% Fold: 7-stranded beta/alpha barrel Superfamily: Glycosyl hydrolases family 6, cellulases Family: Glycosyl hydrolases family 6, cellulases Phyre2 PDB 3l0o chain B Region: 205 - 230 Aligned: 26 Modelled: 26 Confidence: 33.8% Identity: 35% PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima Phyre2 PDB 2f7f chain A Region: 136 - 176 Aligned: 39 Modelled: 41 Confidence: 32.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase, putative; PDBTitle: crystal structure of enterococcus faecalis putative nicotinate2 phosphoribosyltransferase, new york structural genomics consortium Phyre2 PDB 1ng6 chain A Region: 1 - 23 Aligned: 23 Modelled: 23 Confidence: 31.7% Identity: 22% Fold: GatB/YqeY motif Superfamily: GatB/YqeY motif Family: GatB/YqeY domain Phyre2 1 c3absD_ 2 c3anyB_ 3 c2e5cA_ 4 d2f7fa1 5 c2i14B_ 6 d1yira1 7 d1dysa_ 8 c1yirA_ 9 d2huha1 10 d3bgsa1 11 d2i14a1 12 d3pnpa_ 13 c3os4A_ 14 d1ytda1 15 c3ggsA_ 16 c2p4sA_ 17 d1qjwa_ 18 c3l0oB_ 19 c2f7fA_ 20 d1ng6a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3absD_ 100.0 100 PDB header:lyase Chain: D: PDB Molecule:ethanolamine ammonia-lyase light chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with adeninylpentylcobalamin and ethanolamine 2 c3anyB_ 100.0 100 PDB header:lyase Chain: B: PDB Molecule:ethanolamine ammonia-lyase light chain; PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and (r)-2-amino-1-propanol 3 c2e5cA_ 75.7 28 PDB header:transferase Chain: A: PDB Molecule:nicotinamide phosphoribosyltransferase; PDBTitle: crystal structure of human nmprtase complexed with 5'-phosphoribosyl-2 1'-pyrophosphate 4 d2f7fa1 55.6 21 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 5 c2i14B_ 51.5 33 PDB header:transferase Chain: B: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide2 pyrophosphorylase from pyrococcus furiosus 6 d1yira1 50.4 20 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain 7 d1dysa_ 49.6 18 Fold:7-stranded beta/alpha barrel Superfamily:Glycosyl hydrolases family 6, cellulases Family:Glycosyl hydrolases family 6, cellulases 8 c1yirA_ 46.1 20 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase 2; PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase 9 d2huha1 44.4 38 Fold:C2 domain-like Superfamily:Smr-associated domain-like Family:Smr-associated domain 10 d3bgsa1 43.7 23 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 11 d2i14a1 43.4 31 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 12 d3pnpa_ 42.0 23 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 13 c3os4A_ 41.2 20 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: the crystal structure of nicotinate phosphoribosyltransferase from2 yersinia pestis 14 d1ytda1 36.8 21 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 15 c3ggsA_ 36.3 23 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: human purine nucleoside phosphorylase double mutant e201q,n243d2 complexed with 2-fluoro-2'-deoxyadenosine 16 c2p4sA_ 35.9 28 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: structure of purine nucleoside phosphorylase from anopheles gambiae in2 complex with dadme-immh 17 d1qjwa_ 34.0 22 Fold:7-stranded beta/alpha barrel Superfamily:Glycosyl hydrolases family 6, cellulases Family:Glycosyl hydrolases family 6, cellulases 18 c3l0oB_ 33.8 35 PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima 19 c2f7fA_ 32.0 21 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase, putative; PDBTitle: crystal structure of enterococcus faecalis putative nicotinate2 phosphoribosyltransferase, new york structural genomics consortium 20 d1ng6a_ 31.7 22 Fold:GatB/YqeY motif Superfamily:GatB/YqeY motif Family:GatB/YqeY domain 21 c1xpuB_ not modelled 31.5 38 PDB header:transcription/rna Chain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb) 22 c3otbB_ not modelled 31.2 28 PDB header:transferase Chain: B: PDB Molecule:trna(his) guanylyltransferase; PDBTitle: crystal structure of human trnahis guanylyltransferase (thg1) - dgtp2 complex 23 c2gsoB_ not modelled 31.1 20 PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate 24 d2vapa1 not modelled 29.4 19 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 25 c1tcvB_ not modelled 29.0 12 PDB header:transferase Chain: B: PDB Molecule:purine-nucleoside phosphorylase; PDBTitle: crystal structure of the purine nucleoside phosphorylase2 from schistosoma mansoni in complex with non-detergent3 sulfobetaine 195 and acetate 26 d1oc7a_ not modelled 27.1 19 Fold:7-stranded beta/alpha barrel Superfamily:Glycosyl hydrolases family 6, cellulases Family:Glycosyl hydrolases family 6, cellulases 27 c3a64A_ not modelled 25.2 22 PDB header:hydrolase Chain: A: PDB Molecule:cellobiohydrolase; PDBTitle: crystal structure of cccel6c, a glycoside hydrolase family 62 enzyme, from coprinopsis cinerea 28 d2jeka1 not modelled 25.2 23 Fold:Rv1873-like Superfamily:Rv1873-like Family:Rv1873-like 29 d1dk0a_ not modelled 24.7 25 Fold:Heme-binding protein A (HasA) Superfamily:Heme-binding protein A (HasA) Family:Heme-binding protein A (HasA) 30 d1ofua1 not modelled 24.5 17 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 31 c3la8A_ not modelled 24.5 27 PDB header:transferase Chain: A: PDB Molecule:putative purine nucleoside phosphorylase; PDBTitle: the crystal structure of smu.1229 from streptococcus mutans ua159 32 d1qe5a_ not modelled 23.9 15 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 33 c3ddrC_ not modelled 21.7 25 PDB header:membrane protein/heme binding protein Chain: C: PDB Molecule:hemophore hasa; PDBTitle: structure of the serratia marcescens hemophore receptor hasr-ile671gly2 mutant in complex with its hemophore hasa and heme 34 d1gdta1 not modelled 21.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 35 c2zf8A_ not modelled 21.4 24 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 36 c1ybeA_ not modelled 21.2 27 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase 37 d1vmka_ not modelled 20.8 15 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 38 d1rvxa_ not modelled 20.6 26 Fold:Viral protein domain Superfamily:Viral protein domain Family:Influenza hemagglutinin headpiece 39 c1vlpA_ not modelled 19.7 15 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of a putative nicotinate phosphoribosyltransferase2 (yor209c, npt1) from saccharomyces cerevisiae at 1.75 a resolution 40 c3dmaA_ not modelled 19.1 5 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:exopolyphosphatase-related protein; PDBTitle: crystal structure of an exopolyphosphatase-related protein2 from bacteroides fragilis. northeast structural genomics3 target bfr192 41 c1ytkA_ not modelled 19.0 23 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase from thermoplasma PDBTitle: crystal structure of a nicotinate phosphoribosyltransferase from2 thermoplasma acidophilum with nicotinate mononucleotide 42 c2rhoB_ not modelled 18.8 19 PDB header:cell cycle Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: synthetic gene encoded bacillus subtilis ftsz ncs dimer with2 bound gdp and gtp-gamma-s 43 c1w5fA_ not modelled 18.6 17 PDB header:cell division Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz, t7 mutated, domain swapped (t. maritima) 44 c3crqA_ not modelled 18.4 12 PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel 45 c1b0aA_ not modelled 18.3 20 PDB header:oxidoreductase,hydrolase Chain: A: PDB Molecule:protein (fold bifunctional protein); PDBTitle: 5,10, methylene-tetrahydropholate2 dehydrogenase/cyclohydrolase from e coli. 46 c3szzA_ not modelled 18.1 18 PDB header:hydrolase Chain: A: PDB Molecule:phosphonoacetate hydrolase; PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate 47 c2p10D_ not modelled 17.1 14 PDB header:hydrolase Chain: D: PDB Molecule:mll9387 protein; PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution 48 c2c2pA_ not modelled 16.8 24 PDB header:hydrolase Chain: A: PDB Molecule:g/u mismatch-specific dna glycosylase; PDBTitle: the crystal structure of mismatch specific uracil-dna2 glycosylase (mug) from deinococcus radiodurans 49 d1rq2a1 not modelled 16.6 20 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 50 d2p10a1 not modelled 16.2 14 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Mll9387-like 51 c2vg2C_ not modelled 16.1 25 PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp 52 d1ybea1 not modelled 15.7 27 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain 53 d1xpua3 not modelled 15.5 27 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 54 d2jdia3 not modelled 15.5 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 55 c2vawA_ not modelled 15.2 20 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz pseudomonas aeruginosa gdp 56 c3q3qA_ not modelled 15.1 14 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 57 d1jlja_ not modelled 14.6 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 58 d1ns5a_ not modelled 14.6 24 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 59 d1w5fa1 not modelled 14.3 17 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 60 d1q6za1 not modelled 14.3 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 61 c3khsB_ not modelled 14.1 27 PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase 62 c2vxyA_ not modelled 14.0 20 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: the structure of ftsz from bacillus subtilis at 1.7a2 resolution 63 c2r6r1_ not modelled 13.9 17 PDB header:cell cycle Chain: 1: PDB Molecule:cell division protein ftsz; PDBTitle: aquifex aeolicus ftsz 64 c1e9kA_ not modelled 13.8 29 PDB header:hydrolase Chain: A: PDB Molecule:camp specific phosphodiesterase pde4d5; PDBTitle: the structure of the rack1 interaction sites located within2 the unique n-terminal region of the camp-specific3 phosphodiesterase, pde4d5. 65 c1ofuB_ not modelled 13.4 20 PDB header:bacterial cell division inhibitor Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: crystal structure of sula:ftsz from pseudomonas aeruginosa 66 d1muga_ not modelled 13.1 24 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like 67 d2jdid3 not modelled 13.0 50 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 68 c2d3yA_ not modelled 12.9 33 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8 69 c3ikbB_ not modelled 12.9 56 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159. 70 d1fx0a3 not modelled 12.9 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 71 d1yo6a1 not modelled 12.8 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 72 d1skye3 not modelled 12.1 50 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 73 c3cvjB_ not modelled 11.8 21 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 74 d1fx0b3 not modelled 11.8 50 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 75 c2rbaB_ not modelled 11.6 24 PDB header:hydrolase/dna Chain: B: PDB Molecule:g/t mismatch-specific thymine dna glycosylase; PDBTitle: structure of human thymine dna glycosylase bound to abasic and2 undamaged dna 76 c1w59B_ not modelled 11.6 23 PDB header:cell division Chain: B: PDB Molecule:cell division protein ftsz homolog 1; PDBTitle: ftsz dimer, empty (m. jannaschii) 77 c2c2xB_ not modelled 11.6 18 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase- PDBTitle: three dimensional structure of bifunctional2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase3 from mycobacterium tuberculosis 78 d1skyb3 not modelled 11.4 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 79 c2d07A_ not modelled 11.1 39 PDB header:hydrolase Chain: A: PDB Molecule:g/t mismatch-specific thymine dna glycosylase; PDBTitle: crystal structure of sumo-3-modified thymine-dna glycosylase 80 c3ragA_ not modelled 10.5 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein aaci_0196 from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446 81 d1ecfa1 not modelled 10.2 24 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 82 d1d0gr1 not modelled 10.1 45 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 83 c2l25A_ not modelled 9.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: np_888769.1 84 c3nglA_ not modelled 9.8 20 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of bifunctional 5,10-methylenetetrahydrofolate2 dehydrogenase / cyclohydrolase from thermoplasma acidophilum 85 c3lxqB_ not modelled 9.8 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a 86 c3kzvA_ not modelled 9.6 24 PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized oxidoreductase yir035c; PDBTitle: the crystal structure of a cytoplasmic protein with unknown function2 from saccharomyces cerevisiae 87 d1fsua_ not modelled 9.4 18 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 88 c2q1yB_ not modelled 9.4 19 PDB header:cell cycle, signaling protein Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: crystal structure of cell division protein ftsz from mycobacterium2 tuberculosis in complex with gtp-gamma-s 89 c2l6pA_ not modelled 9.3 18 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:phac1, phac2 and phad genes; PDBTitle: nmr solution structure of the protein np_253742.1 90 c1ecjB_ not modelled 8.9 24 PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer 91 d1ei6a_ not modelled 8.9 22 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Phosphonoacetate hydrolase 92 c3fybA_ not modelled 8.7 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function (duf1244); PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis 93 d1kifa1 not modelled 7.8 22 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:D-aminoacid oxidase, N-terminal domain 94 d1yt3a1 not modelled 7.8 12 Fold:SAM domain-like Superfamily:HRDC-like Family:RNase D C-terminal domains 95 d1g2oa_ not modelled 7.8 24 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 96 c3h87D_ not modelled 7.7 25 PDB header:toxin/antitoxin Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis 97 d1wura1 not modelled 7.5 10 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 98 c1wm9D_ not modelled 7.5 10 PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8 99 d1hdha_ not modelled 7.4 31 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0