Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	A	I	P	W	R	P	F	N	L	R	G	I	K	M	K	G	L	L	S	L	L	I	F	S	M	V	L	P	A	H	A	G	I	V	I	Y	G	T	R	I	I	Y	P	A	E	N	K	E	V	M	V	Q	L	M	N	Q	G	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?																					?	?	?	?	?			?											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	S	S	L	L	Q	A	W	I	D	D	G	D	T	S	L	P	P	E	K	I	Q	V	P	F	M	L	T	P	P	V	A	K	I	G	A	N	S	G	Q	Q	V	K	I	K	I	M	P	N	K	L	P	T	N	K	E	S	I	F	Y
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?	?	?	?	?						?	?	?					?												?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	N	V	L	D	I	P	P	N	S	P	E	Q	E	G	K	N	A	L	K	F	A	M	Q	N	R	I	K	L	F	Y	R	P	A	G	I	A	P	V	N	K	A	T	F	K	K	L	L	V	N	R	S	G	N	G	L	V	I	K	N
Secondary structure
SS confidence
Disorder					?			?	?	?	?	?	?	?	?	?	?	?																			?	?	?	?	?	?	?	?	?								?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence		D	S	A	N	W	V	T	I	S	D	V	K	A	N	N	V	K	V	N	Y	E	T	I	M	I	A	P	L	E	S	Q	S	V	N	V	K	S	N	N	A	N	N	W	H	L	T	I	I	D	D	H	G	N	Y	I	S	D	K	I
Secondary structure
SS confidence
Disorder															?	?		?	?	?	?	?	?	?							?							?	?		?															?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1z9s chain A Region: 30 - 237 Aligned: 190 Modelled: 208 Confidence: 100.0% Identity: 29% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 1qun chain A Region: 34 - 237 Aligned: 192 Modelled: 204 Confidence: 100.0% Identity: 30% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 2co7 chain B Region: 29 - 237 Aligned: 192 Modelled: 209 Confidence: 100.0% Identity: 21% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 3q48 chain B Region: 36 - 238 Aligned: 181 Modelled: 187 Confidence: 100.0% Identity: 33% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 1qpx chain A Region: 34 - 236 Aligned: 186 Modelled: 203 Confidence: 100.0% Identity: 31% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 1l4i chain A Region: 34 - 237 Aligned: 182 Modelled: 199 Confidence: 100.0% Identity: 32% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 3f6i chain B Region: 34 - 239 Aligned: 182 Modelled: 198 Confidence: 100.0% Identity: 24% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 2co7 chain B domain 1 Region: 29 - 156 Aligned: 117 Modelled: 128 Confidence: 100.0% Identity: 26% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1p5v chain A domain 1 Region: 29 - 156 Aligned: 111 Modelled: 128 Confidence: 100.0% Identity: 35% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 34 - 160 Aligned: 121 Modelled: 127 Confidence: 100.0% Identity: 36% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 34 - 157 Aligned: 114 Modelled: 124 Confidence: 100.0% Identity: 38% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 34 - 156 Aligned: 110 Modelled: 123 Confidence: 100.0% Identity: 36% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 2 Region: 159 - 238 Aligned: 78 Modelled: 80 Confidence: 99.7% Identity: 22% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1p5v chain A domain 2 Region: 157 - 237 Aligned: 74 Modelled: 81 Confidence: 99.7% Identity: 18% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2co7 chain B domain 2 Region: 157 - 237 Aligned: 75 Modelled: 81 Confidence: 99.6% Identity: 15% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1l4i chain A domain 2 Region: 159 - 238 Aligned: 71 Modelled: 80 Confidence: 99.6% Identity: 25% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2j2z chain A domain 2 Region: 164 - 236 Aligned: 71 Modelled: 73 Confidence: 99.6% Identity: 27% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1m1s chain A Region: 32 - 132 Aligned: 88 Modelled: 101 Confidence: 97.8% Identity: 13% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1row chain A Region: 35 - 132 Aligned: 85 Modelled: 98 Confidence: 97.3% Identity: 13% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1grw chain A Region: 33 - 153 Aligned: 111 Modelled: 121 Confidence: 97.2% Identity: 9% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 1 c1z9sA_ 2 c1qunA_ 3 c2co7B_ 4 c3q48B_ 5 c1qpxA_ 6 c1l4iA_ 7 c3f6iB_ 8 d2co7b1 9 d1p5va1 10 d2j2za1 11 d3bwuc1 12 d1l4ia1 13 d3bwuc2 14 d1p5va2 15 d2co7b2 16 d1l4ia2 17 d2j2za2 18 d1m1sa_ 19 d1rowa_ 20 d1grwa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1z9sA_ 100.0 29 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 2 c1qunA_ 100.0 30 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 3 c2co7B_ 100.0 21 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 4 c3q48B_ 100.0 33 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 5 c1qpxA_ 100.0 31 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 6 c1l4iA_ 100.0 32 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 7 c3f6iB_ 100.0 24 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 8 d2co7b1 100.0 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d1p5va1 100.0 35 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d2j2za1 100.0 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d3bwuc1 100.0 38 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 100.0 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 d3bwuc2 99.7 22 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 14 d1p5va2 99.7 18 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 15 d2co7b2 99.6 15 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 16 d1l4ia2 99.6 25 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 17 d2j2za2 99.6 27 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 18 d1m1sa_ 97.8 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 19 d1rowa_ 97.3 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 d1grwa_ 97.2 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 21 c2qsvA_ not modelled 96.8 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 22 c1z9oB_ not modelled 96.5 15 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 23 d1mspa_ not modelled 95.8 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 24 c2ys4A_ not modelled 95.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 25 c2e6jA_ not modelled 94.5 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 26 d1wica_ not modelled 93.6 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 27 c3qisA_ not modelled 92.3 9 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 28 c3o0lB_ not modelled 91.2 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 29 c3qbtH_ not modelled 90.9 9 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 30 d2vzsa2 not modelled 90.8 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 31 c3ac0B_ not modelled 88.8 11 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 32 c2x41A_ not modelled 87.2 11 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 33 c2je8B_ not modelled 83.2 12 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 34 d4ubpb_ not modelled 76.9 11 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 35 c3ginB_ not modelled 75.6 9 PDB header:metal binding protein Chain: B: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: crystal structure of e454k-cbd1 36 d1ejxb_ not modelled 72.8 8 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 37 d1e9ya1 not modelled 71.0 11 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 38 c3qgaD_ not modelled 65.2 15 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 39 d2dpka1 not modelled 62.8 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 40 c2qvkA_ not modelled 58.6 11 PDB header:metal binding protein Chain: A: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis 41 d1ufga_ not modelled 56.4 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 42 d1e42a1 not modelled 55.9 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 43 c1e9zA_ not modelled 55.9 11 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 44 d1k3ra1 not modelled 49.1 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 45 c2lllA_ not modelled 49.0 21 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 46 c2f1eA_ not modelled 48.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein 47 c3jt0B_ not modelled 48.2 11 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 48 c3eujB_ not modelled 45.5 20 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer 49 c3rb7E_ not modelled 45.2 10 PDB header:metal binding protein Chain: E: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of cbd12 from calx1.2 50 c1e42A_ not modelled 37.6 23 PDB header:endocytosis Chain: A: PDB Molecule:ap-2 complex subunit beta; PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2 51 d1aoza2 not modelled 36.3 6 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 52 d1w8oa1 not modelled 33.3 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 53 d1tzaa_ not modelled 31.2 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 54 d1ifra_ not modelled 30.7 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 55 d1hfua2 not modelled 30.4 6 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 56 c2r39A_ not modelled 30.3 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus 57 d2fwua1 not modelled 26.2 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 58 c1yycA_ not modelled 25.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 59 c3isyA_ not modelled 24.0 12 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 60 d1kyaa2 not modelled 23.7 4 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 61 c3cfuA_ not modelled 23.2 11 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 62 d1xo8a_ not modelled 22.4 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 63 d1v8ha1 not modelled 22.2 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:SoxZ-like 64 d1v10a2 not modelled 21.0 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 65 c3butA_ not modelled 20.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus 66 c2vzvB_ not modelled 17.8 13 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 67 d1ivta_ not modelled 17.1 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 68 d1gyca2 not modelled 16.1 8 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 69 d1xq4a_ not modelled 16.0 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 70 d1jz8a2 not modelled 15.7 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 71 d1v7wa1 not modelled 15.1 12 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glycosyltransferase family 36 C-terminal domain 72 d1ahsa_ not modelled 14.8 25 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 73 c2l02B_ not modelled 14.6 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375 74 c1l9mB_ not modelled 14.4 10 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 75 c1wkwB_ not modelled 13.7 67 PDB header:translation/protein binding Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e PDBTitle: crystal structure of the ternary complex of eif4e-m7gpppa-2 4ebp1 peptide 76 d1ex0a2 not modelled 12.8 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 77 c2l0dA_ not modelled 12.4 21 PDB header:cell adhesion Chain: A: PDB Molecule:cell surface protein; PDBTitle: solution nmr structure of putative cell surface protein ma_4588 (272-2 376 domain) from methanosarcina acetivorans, northeast structural3 genomics consortium target mvr254a 78 d2pwwa1 not modelled 11.9 17 Fold:TBP-like Superfamily:YugN-like Family:YugN-like 79 c3h6aB_ not modelled 11.8 6 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-4; PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium 80 d1cuoa_ not modelled 11.5 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 81 c3k6sB_ not modelled 11.1 11 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain 82 d1xvsa_ not modelled 10.5 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:ApaG-like Family:ApaG-like 83 d1hmja_ not modelled 9.8 23 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 84 d2ccwa1 not modelled 9.7 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 85 c3qe5A_ not modelled 9.3 17 PDB header:cell adhesion Chain: A: PDB Molecule:major cell-surface adhesin pac; PDBTitle: complete structure of streptococcus mutans antigen i/ii carboxy-2 terminus 86 c2h47C_ not modelled 9.3 17 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:azurin; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 87 d1vjja2 not modelled 9.2 5 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 88 c2f7fA_ not modelled 9.2 13 PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase, putative; PDBTitle: crystal structure of enterococcus faecalis putative nicotinate2 phosphoribosyltransferase, new york structural genomics consortium 89 d1cc3a_ not modelled 9.1 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 90 c2kl6A_ not modelled 8.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a 91 c1v7wA_ not modelled 8.8 12 PDB header:transferase Chain: A: PDB Molecule:chitobiose phosphorylase; PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac 92 d1g0da2 not modelled 8.7 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 93 c2qziA_ not modelled 8.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311. 94 d2q9oa2 not modelled 8.5 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 95 c2ii8F_ not modelled 8.0 16 PDB header:signaling protein Chain: F: PDB Molecule:anabaena sensory rhodopsin transducer protein; PDBTitle: anabaena sensory rhodopsin transducer 96 c3rfrI_ not modelled 7.9 18 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 97 d1dd1a_ not modelled 7.9 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 98 c3tqzA_ not modelled 7.8 18 PDB header:hydrolase Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)2 from coxiella burnetii 99 d1jzga_ not modelled 7.8 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0