Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76398
DateThu Jan 5 12:22:39 GMT 2012
Unique Job IDbba10a0ebc260423

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3k07A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
Confidence and coverage
Confidence:100.0% Coverage: 96%
995 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLY
Secondary structure 
SS confidence 
Disorder  ?????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAA
Secondary structure 
SS confidence 
Disorder 
??????
???
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  INAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQISG
Secondary structure 
SS confidence 
Disorder 
????
??
?
???
??
?
?
??
????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  VGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPSRAVTLSA
Secondary structure 
SS confidence 
Disorder  ?
????
?
???????
??
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  NDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAWANKEQAIVMNVQRQPGA
Secondary structure 
SS confidence 
Disorder  ????
???
???
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  NIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDTQFELMMAIALVVMIIYL
Secondary structure 
SS confidence 
Disorder  ?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  FLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENIS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  RYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVAI
Secondary structure 
SS confidence 
Disorder 
?
?
?
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  LISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIAAYGRGLAKVLNHPWLTL
Secondary structure 
SS confidence 
Disorder 
??????????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  SVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDP
Secondary structure 
SS confidence 
Disorder 
???
?
?
??
?
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  AVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQP
Secondary structure 
SS confidence 
Disorder 
?
??????????
?
??
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  TQDLTIDTQVSRTQYQFTLQATSLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYV
Secondary structure 
SS confidence 
Disorder  ?????????????
?
?
??
????
?
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  NVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTI
Secondary structure 
SS confidence 
Disorder 
?
????
?
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  RLTSSDGGVVPLSSIAKIEQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEK
Secondary structure 
SS confidence 
Disorder 
?
?
??
?
??????
???
??????
Disorder confidence 
 
   .........850.........860.........870.........880.........890.........900
Sequence  TLNLPVDITTQFQGSTLAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPT
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........910.........920.........930.........940.........950.........960
Sequence  AGVGALLALLIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPREAIYQA
Secondary structure 
SS confidence 
Disorder 
?
???
Disorder confidence 
 
   .........970.........980.........990.........1000.........1010.........1020
Sequence  CLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQVLTLFTTPVIYL
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........1030.........1040
Sequence  LFDRLALWTKSRFARHEEEA
Secondary structure 
SS confidence 
Disorder 
?????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3k07 chain A

3D model

Region: 12 - 1023
Aligned: 995
Modelled: 995
Confidence: 100.0%
Identity: 22%
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa

Phyre2

PDB 1oy8 chain A

3D model

Region: 18 - 1029
Aligned: 989
Modelled: 1012
Confidence: 100.0%
Identity: 29%
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump

Phyre2

PDB 3aqp chain B

3D model

Region: 95 - 1025
Aligned: 677
Modelled: 701
Confidence: 100.0%
Identity: 15%
PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus

Phyre2

PDB 1iwg chain A domain 8

3D model

Region: 829 - 1029
Aligned: 201
Modelled: 201
Confidence: 100.0%
Identity: 30%
Fold: Multidrug efflux transporter AcrB transmembrane domain
Superfamily: Multidrug efflux transporter AcrB transmembrane domain
Family: Multidrug efflux transporter AcrB transmembrane domain

Phyre2

PDB 1iwg chain A domain 7

3D model

Region: 307 - 500
Aligned: 194
Modelled: 194
Confidence: 100.0%
Identity: 39%
Fold: Multidrug efflux transporter AcrB transmembrane domain
Superfamily: Multidrug efflux transporter AcrB transmembrane domain
Family: Multidrug efflux transporter AcrB transmembrane domain

Phyre2

PDB 1iwg chain A domain 1

3D model

Region: 49 - 137
Aligned: 89
Modelled: 89
Confidence: 99.9%
Identity: 30%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 1iwg chain A domain 2

3D model

Region: 235 - 333
Aligned: 99
Modelled: 99
Confidence: 99.7%
Identity: 25%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 1iwg chain A domain 5

3D model

Region: 193 - 276
Aligned: 84
Modelled: 84
Confidence: 99.5%
Identity: 32%
Fold: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains

Phyre2

PDB 1iwg chain A domain 6

3D model

Region: 192 - 275
Aligned: 84
Modelled: 84
Confidence: 99.3%
Identity: 11%
Fold: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains

Phyre2

PDB 1iwg chain A domain 3

3D model

Region: 565 - 665
Aligned: 101
Modelled: 101
Confidence: 98.9%
Identity: 16%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 1iwg chain A domain 4

3D model

Region: 681 - 852
Aligned: 82
Modelled: 84
Confidence: 97.4%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family: Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

Phyre2

PDB 2rop chain A

3D model

Region: 73 - 219
Aligned: 119
Modelled: 147
Confidence: 95.9%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of domains 3 and 4 of human atp7b

Phyre2

PDB 2ew9 chain A

3D model

Region: 74 - 219
Aligned: 121
Modelled: 146
Confidence: 95.7%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of apowln5-6

Phyre2

PDB 2rml chain A

3D model

Region: 74 - 219
Aligned: 113
Modelled: 125
Confidence: 94.6%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting p-type atpase copa;
PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa

Phyre2

PDB 1q8l chain A

3D model

Region: 169 - 219
Aligned: 45
Modelled: 46
Confidence: 89.5%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2kkh chain A

3D model

Region: 169 - 219
Aligned: 45
Modelled: 51
Confidence: 88.9%
Identity: 13%
PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4

Phyre2

PDB 1s6u chain A

3D model

Region: 168 - 219
Aligned: 46
Modelled: 52
Confidence: 88.4%
Identity: 17%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2aw0 chain A

3D model

Region: 168 - 219
Aligned: 46
Modelled: 52
Confidence: 88.4%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2qif chain A domain 1

3D model

Region: 168 - 220
Aligned: 47
Modelled: 53
Confidence: 88.3%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2

PDB 2l3m chain A

3D model

Region: 168 - 219
Aligned: 46
Modelled: 52
Confidence: 88.0%
Identity: 15%
PDB header:metal binding protein
Chain: A: PDB Molecule:copper-ion-binding protein;
PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames

Phyre2
1
c3k07A_
2
c1oy8A_
3
c3aqpB_
4
d1iwga8
5
d1iwga7
6
d1iwga1
7
d1iwga2
8
d1iwga5
9
d1iwga6
10
d1iwga3
11
d1iwga4
12
c2ropA_
13
c2ew9A_
14
c2rmlA_
15
d1q8la_
16
c2kkhA_
17
d1s6ua_
18
d2aw0a_
19
d2qifa1
20
c2l3mA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3k07A_
100.0 22 PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
2c1oy8A_
100.0 29 PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
3c3aqpB_
100.0 15 PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
4d1iwga8
100.0 30 Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
5d1iwga7
100.0 39 Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
6d1iwga1
99.9 30 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
7d1iwga2
99.7 25 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
8d1iwga5
99.5 32 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
9d1iwga6
99.3 11 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
10d1iwga3
98.9 16 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
11d1iwga4
97.4 20 Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
12c2ropA_
95.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of domains 3 and 4 of human atp7b
13c2ew9A_
95.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: solution structure of apowln5-6
14c2rmlA_
94.6 14 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting p-type atpase copa;
PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa
15d1q8la_
89.5 18 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
16c2kkhA_
88.9 13 PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4
17d1s6ua_
88.4 17 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
18d2aw0a_
88.4 26 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
19d2qifa1
88.3 19 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
20c2l3mA_
88.0 15 PDB header:metal binding protein
Chain: A: PDB Molecule:copper-ion-binding protein;
PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames
21d1cpza_
not modelled 87.3 22 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
22d1osda_
not modelled 87.3 19 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
23d1afia_
not modelled 86.4 17 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
24c1yjrA_
not modelled 86.3 9 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein
25d1p6ta2
not modelled 86.2 17 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
26c2ofhX_
not modelled 86.2 11 PDB header:hydrolase, membrane protein
Chain: X: PDB Molecule:zinc-transporting atpase;
PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form
27d1p6ta1
not modelled 86.1 13 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
28c2ga7A_
not modelled 85.8 24 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein)
29c3dxsX_
not modelled 85.2 15 PDB header:hydrolase
Chain: X: PDB Molecule:copper-transporting atpase ran1;
PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase
30d1kvja_
not modelled 85.2 22 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
31c2ldiA_
not modelled 84.6 11 PDB header:hydrolase
Chain: A: PDB Molecule:zinc-transporting atpase;
PDBTitle: nmr solution structure of ziaan sub mutant
32c1y3kA_
not modelled 83.7 7 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein
33c2yvxD_
not modelled 82.0 12 PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
34c2kt2A_
not modelled 76.1 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase
35c1yg0A_
not modelled 68.1 13 PDB header:metal transport
Chain: A: PDB Molecule:cop associated protein;
PDBTitle: solution structure of apo-copp from helicobacter pylori
36c2aj1A_
not modelled 67.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:probable cadmium-transporting atpase;
PDBTitle: solution structure of apocada
37d1uwda_
not modelled 66.6 19 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
38d2cu6a1
not modelled 65.6 23 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
39c2gcfA_
not modelled 60.2 9 PDB header:hydrolase
Chain: A: PDB Molecule:cation-transporting atpase pacs;
PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form
40d1mwza_
not modelled 56.3 20 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
41c1jk9D_
not modelled 55.9 7 PDB header:oxidoreductase
Chain: D: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: heterodimer between h48f-ysod1 and yccs
42d1qupa2
not modelled 54.9 7 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
43d2ggpb1
not modelled 53.9 7 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
44c3j09A_
not modelled 53.4 13 PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
45c2zztA_
not modelled 53.0 0 PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the cytosolic domain of the cation2 diffusion facilitator family protein
46c1yj7A_
not modelled 51.6 10 PDB header:protein transport
Chain: A: PDB Molecule:escj;
PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj
47c1ciiA_
not modelled 49.5 12 PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
48c2k2pA_
not modelled 45.9 5 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1203;
PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
49c2rogA_
not modelled 42.7 16 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells
50c1qupA_
not modelled 42.0 7 PDB header:chaperone
Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone;
PDBTitle: crystal structure of the copper chaperone for superoxide2 dismutase
51c3lnoA_
not modelled 40.8 16 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis
52c2crlA_
not modelled 40.1 23 PDB header:chaperone
Chain: A: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase
53d2nwwa1
not modelled 39.4 9 Fold:Proton glutamate symport protein
Superfamily:Proton glutamate symport protein
Family:Proton glutamate symport protein
54d2cfxa2
not modelled 37.2 0 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
55c1nwaA_
not modelled 35.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: structure of mycobacterium tuberculosis methionine2 sulfoxide reductase a in complex with protein-bound3 methionine
56d1nwaa_
not modelled 35.0 21 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
57d1sb6a_
not modelled 33.4 7 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
58c2bbjB_
not modelled 32.5 15 PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
59d2cyya2
not modelled 30.9 4 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
60d2vv5a2
not modelled 29.9 14 Fold:Ferredoxin-like
Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain
Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain
61c2yy3B_
not modelled 29.3 4 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-beta;
PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii
62d1cc8a_
not modelled 29.3 15 Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
63d2cg4a2
not modelled 26.3 5 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
64c2kncA_
not modelled 25.9 13 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
65d2phcb2
not modelled 23.9 16 Fold:DCoH-like
Superfamily:PH0987 N-terminal domain-like
Family:PH0987 N-terminal domain-like
66c3g7sA_
not modelled 23.7 12 PDB header:ligase
Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1);
PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus
67c2zbcH_
not modelled 21.3 7 PDB header:transcription
Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc;
PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7.
68c3bqhA_
not modelled 21.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb;
PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form)
69c2e1cA_
not modelled 20.2 4 PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
70c2kyzA_
not modelled 20.0 17 PDB header:metal binding protein
Chain: A: PDB Molecule:heavy metal binding protein;
PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima
71c2jnvA_
not modelled 18.8 16 PDB header:metal transport
Chain: A: PDB Molecule:nifu-like protein 1, chloroplast;
PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa
72d1i1ga2
not modelled 17.6 7 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
73c3iplB_
not modelled 16.7 9 PDB header:ligase
Chain: B: PDB Molecule:2-succinylbenzoate--coa ligase;
PDBTitle: crystal structure of o-succinylbenzoic acid-coa ligase from2 staphylococcus aureus subsp. aureus mu50
74c2e1aD_
not modelled 16.6 11 PDB header:transcription
Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc;
PDBTitle: crystal structure of ffrp-dm1
75c2djwF_
not modelled 15.9 13 PDB header:unknown function
Chain: F: PDB Molecule:probable transcriptional regulator, asnc family;
PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8
76c3e0mB_
not modelled 15.6 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb
77c3aqoD_
not modelled 14.6 18 PDB header:membrane protein
Chain: D: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: structure and function of a membrane component secdf that enhances2 protein export
78c2hdiA_
not modelled 14.6 12 PDB header:protein transport,antimicrobial protein
Chain: A: PDB Molecule:colicin i receptor;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
79c2j89A_
not modelled 14.4 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases
80d1oeya_
not modelled 12.2 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
81c3s6eB_
not modelled 12.0 4 PDB header:rna binding protein
Chain: B: PDB Molecule:rna-binding protein 39;
PDBTitle: crystal structure of a rna binding motif protein 39 (rbm39) from mus2 musculus at 0.95 a resolution
82d1jb0i_
not modelled 11.9 19 Fold:Single transmembrane helix
Superfamily:Subunit VIII of photosystem I reaction centre, PsaI
Family:Subunit VIII of photosystem I reaction centre, PsaI
83d2gufa1
not modelled 11.8 17 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
84c2vbzA_
not modelled 11.8 9 PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
85d1xhja_
not modelled 11.3 14 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
86d1a87a_
not modelled 10.6 13 Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
87c1a87A_
not modelled 10.6 13 PDB header:bacteriocin
Chain: A: PDB Molecule:colicin n;
PDBTitle: colicin n
88c3fryB_
not modelled 10.4 12 PDB header:hydrolase
Chain: B: PDB Molecule:probable copper-exporting p-type atpase a;
PDBTitle: crystal structure of the copa c-terminal metal binding domain
89c3pilA_
not modelled 10.1 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form
90c2ki0A_
not modelled 10.1 29 PDB header:de novo protein
Chain: A: PDB Molecule:ds119;
PDBTitle: nmr structure of a de novo designed beta alpha beta
91d1th5a1
not modelled 9.6 22 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
92c1vbkA_
not modelled 9.6 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1313;
PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3
93d1ff3a_
not modelled 9.5 25 Fold:Ferredoxin-like
Superfamily:Peptide methionine sulfoxide reductase
Family:Peptide methionine sulfoxide reductase
94d1vbka2
not modelled 9.5 18 Fold:THUMP domain
Superfamily:THUMP domain-like
Family:THUMP domain
95c2vv5D_
not modelled 9.3 14 PDB header:membrane protein
Chain: D: PDB Molecule:small-conductance mechanosensitive channel;
PDBTitle: the open structure of mscs
96d1j27a_
not modelled 9.1 12 Fold:Ferredoxin-like
Superfamily:Hypothetical protein TT1725
Family:Hypothetical protein TT1725
97c3eynB_
not modelled 9.0 11 PDB header:ligase
Chain: B: PDB Molecule:acyl-coenzyme a synthetase acsm2a;
PDBTitle: crystal structure of human acyl-coa synthetase medium-chain2 family member 2a (l64p mutation) in a complex with coa
98d1dt9a3
not modelled 8.9 18 Fold:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Superfamily:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Family:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
99c2i88A_
not modelled 8.9 6 PDB header:membrane protein
Chain: A: PDB Molecule:colicin-e1;
PDBTitle: crystal structure of the channel-forming domain of colicin2 e1

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0