Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	R	E	L	A	I	E	F	S	R	V	T	E	S	A	A	L	A	G	Y	K	W	L	G	R	G	D	K	N	T	A	D	G	A	A	V	N	A	M	R	I	M	L	N	Q	V	N	I	D	G	T	I	V	I	G	E	G	E	I
Secondary structure
SS confidence
Disorder		?	?	?	?																					?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	E	A	P	M	L	Y	I	G	E	K	V	G	T	G	R	G	D	A	V	D	I	A	V	D	P	I	E	G	T	R	M	T	A	M	G	Q	A	N	A	L	A	V	L	A	V	G	D	K	G	C	F	L	N	A	P	D	M	Y	M
Secondary structure
SS confidence
Disorder																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	K	L	I	V	G	P	G	A	K	G	T	I	D	L	N	L	P	L	A	D	N	L	R	N	V	A	A	A	L	G	K	P	L	S	E	L	T	V	T	I	L	A	K	P	R	H	D	A	V	I	A	E	M	Q	Q	L	G	V	R
Secondary structure
SS confidence
Disorder																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	F	A	I	P	D	G	D	V	A	A	S	I	L	T	C	M	P	D	S	E	V	D	V	L	Y	G	I	G	G	A	P	E	G	V	V	S	A	A	V	I	R	A	L	D	G	D	M	N	G	R	L	L	A	R	H	D	V	K	G
Secondary structure
SS confidence
Disorder																	?																																										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	N	E	E	N	R	R	I	G	E	Q	E	L	A	R	C	K	A	M	G	I	E	A	G	K	V	L	R	L	G	D	M	A	R	S	D	N	V	I	F	S	A	T	G	I	T	K	G	D	L	L	E	G	I	S	R	K	G	N	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Sequence		A	T	T	E	T	L	L	I	R	G	K	S	R	T	I	R	R	I	Q	S	I	H	Y	L	D	R	K	D	P	E	M	Q	V	H	I	L
Secondary structure
SS confidence
Disorder										?																	?				?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ni9 chain A Region: 1 - 325 Aligned: 289 Modelled: 300 Confidence: 100.0% Identity: 100% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: GlpX-like bacterial fructose-1,6-bisphosphatase Phyre2 PDB 3luz chain A Region: 8 - 228 Aligned: 198 Modelled: 218 Confidence: 97.5% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:extragenic suppressor protein suhb; PDBTitle: crystal structure of extragenic suppressor protein suhb from2 bartonella henselae, via combined iodide sad molecular replacement Phyre2 PDB 2p3n chain B Region: 1 - 228 Aligned: 202 Modelled: 210 Confidence: 96.9% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: thermotoga maritima impase tm1415 Phyre2 PDB 2qfl chain A Region: 4 - 228 Aligned: 201 Modelled: 208 Confidence: 96.8% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: structure of suhb: inositol monophosphatase and extragenic2 suppressor from e. coli Phyre2 PDB 1lbv chain A Region: 8 - 110 Aligned: 87 Modelled: 90 Confidence: 96.7% Identity: 23% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 2czh chain B Region: 8 - 110 Aligned: 87 Modelled: 87 Confidence: 96.6% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: crystal structure of human myo-inositol monophosphatase 22 (impa2) with phosphate ion (orthorhombic form) Phyre2 PDB 2fvz chain B Region: 8 - 110 Aligned: 89 Modelled: 89 Confidence: 96.6% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: human inositol monophosphosphatase 2 Phyre2 PDB 1xi6 chain A Region: 3 - 110 Aligned: 93 Modelled: 108 Confidence: 96.5% Identity: 22% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1g0h chain A Region: 7 - 110 Aligned: 89 Modelled: 104 Confidence: 96.4% Identity: 20% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 2pcr chain A Region: 8 - 110 Aligned: 78 Modelled: 83 Confidence: 96.3% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: crystal structure of myo-inositol-1(or 4)-monophosphatase (aq_1983)2 from aquifex aeolicus vf5 Phyre2 PDB 2q74 chain B Region: 8 - 228 Aligned: 195 Modelled: 199 Confidence: 96.2% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: mycobacterium tuberculosis suhb Phyre2 PDB 3b8b chain A Region: 31 - 228 Aligned: 184 Modelled: 182 Confidence: 95.9% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:cysq, sulfite synthesis pathway protein; PDBTitle: crystal structure of cysq from bacteroides thetaiotaomicron, a2 bacterial member of the inositol monophosphatase family Phyre2 PDB 2hhm chain A Region: 8 - 110 Aligned: 89 Modelled: 89 Confidence: 95.4% Identity: 16% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1vdw chain A Region: 3 - 110 Aligned: 93 Modelled: 96 Confidence: 95.0% Identity: 20% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1jp4 chain A Region: 3 - 228 Aligned: 211 Modelled: 214 Confidence: 91.8% Identity: 19% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1inp chain A Region: 4 - 110 Aligned: 107 Modelled: 107 Confidence: 90.4% Identity: 23% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1d9q chain A Region: 8 - 98 Aligned: 83 Modelled: 86 Confidence: 87.5% Identity: 14% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1ka1 chain A Region: 1 - 110 Aligned: 95 Modelled: 96 Confidence: 86.2% Identity: 31% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 3uks chain B Region: 31 - 98 Aligned: 60 Modelled: 68 Confidence: 83.6% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative; PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii Phyre2 PDB 1j5t chain A Region: 141 - 312 Aligned: 144 Modelled: 154 Confidence: 75.6% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: Ribulose-phoshate binding barrel Family: Tryptophan biosynthesis enzymes Phyre2 1 d1ni9a_ 2 c3luzA_ 3 c2p3nB_ 4 c2qflA_ 5 d1lbva_ 6 c2czhB_ 7 c2fvzB_ 8 d1xi6a_ 9 d1g0ha_ 10 c2pcrA_ 11 c2q74B_ 12 c3b8bA_ 13 d2hhma_ 14 d1vdwa_ 15 d1jp4a_ 16 d1inpa_ 17 d1d9qa_ 18 d1ka1a_ 19 c3uksB_ 20 d1j5ta_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ni9a_ 100.0 100 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:GlpX-like bacterial fructose-1,6-bisphosphatase 2 c3luzA_ 97.5 15 PDB header:hydrolase Chain: A: PDB Molecule:extragenic suppressor protein suhb; PDBTitle: crystal structure of extragenic suppressor protein suhb from2 bartonella henselae, via combined iodide sad molecular replacement 3 c2p3nB_ 96.9 18 PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: thermotoga maritima impase tm1415 4 c2qflA_ 96.8 20 PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: structure of suhb: inositol monophosphatase and extragenic2 suppressor from e. coli 5 d1lbva_ 96.7 23 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 6 c2czhB_ 96.6 16 PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: crystal structure of human myo-inositol monophosphatase 22 (impa2) with phosphate ion (orthorhombic form) 7 c2fvzB_ 96.6 16 PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: human inositol monophosphosphatase 2 8 d1xi6a_ 96.5 22 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 9 d1g0ha_ 96.4 20 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 10 c2pcrA_ 96.3 27 PDB header:hydrolase Chain: A: PDB Molecule:inositol-1-monophosphatase; PDBTitle: crystal structure of myo-inositol-1(or 4)-monophosphatase (aq_1983)2 from aquifex aeolicus vf5 11 c2q74B_ 96.2 18 PDB header:hydrolase Chain: B: PDB Molecule:inositol-1-monophosphatase; PDBTitle: mycobacterium tuberculosis suhb 12 c3b8bA_ 95.9 16 PDB header:hydrolase Chain: A: PDB Molecule:cysq, sulfite synthesis pathway protein; PDBTitle: crystal structure of cysq from bacteroides thetaiotaomicron, a2 bacterial member of the inositol monophosphatase family 13 d2hhma_ 95.4 16 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 14 d1vdwa_ 95.0 20 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 15 d1jp4a_ 91.8 19 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 16 d1inpa_ 90.4 23 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 17 d1d9qa_ 87.5 14 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 18 d1ka1a_ 86.2 31 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 19 c3uksB_ 83.6 17 PDB header:hydrolase Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative; PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii 20 d1j5ta_ 75.6 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 21 c2yvkA_ not modelled 74.4 20 PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis 22 d1t5oa_ not modelled 68.8 23 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 23 d1g6sa_ not modelled 64.4 19 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 24 d2a0ua1 not modelled 63.4 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 25 c3j08A_ not modelled 62.8 17 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 26 c3j09A_ not modelled 59.4 17 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 27 c3a11D_ not modelled 57.9 16 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 28 d2aeea1 not modelled 56.4 18 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 29 c2b8eB_ not modelled 56.3 18 PDB header:membrane protein Chain: B: PDB Molecule:cation-transporting atpase; PDBTitle: copa atp binding domain 30 c3ecsD_ not modelled 50.7 19 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 31 c3dezA_ not modelled 47.5 14 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 streptococcus mutans 32 d1t9ka_ not modelled 46.9 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 33 d1cjca2 not modelled 45.3 11 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 34 c3n91A_ not modelled 44.0 34 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a structural genomics, unknown function2 (bacova_03430) from bacteroides ovatus at 2.40 a resolution 35 c3rfuC_ not modelled 42.2 17 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 36 c3pajA_ not modelled 41.9 14 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating; PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961 37 c2kg4A_ not modelled 39.2 17 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein PDBTitle: three-dimensional structure of human gadd45alpha in2 solution by nmr 38 c3rf7A_ not modelled 37.0 11 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution 39 d1vb5a_ not modelled 35.0 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 40 c3gwpA_ not modelled 33.0 25 PDB header:lyase Chain: A: PDB Molecule:carbon-sulfur lyase involved in aluminum resistance; PDBTitle: crystal structure of carbon-sulfur lyase involved in aluminum2 resistance (yp_878183.1) from clostridium novyi nt at 2.90 a3 resolution 41 d1lmb3_ not modelled 31.4 26 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 42 c2k2wA_ not modelled 30.1 12 PDB header:cell cycle Chain: A: PDB Molecule:recombination and dna repair protein; PDBTitle: second brct domain of nbs1 43 c2ejaB_ not modelled 29.3 18 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus 44 d1spia_ not modelled 28.8 20 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 45 c3roiA_ not modelled 27.7 18 PDB header:transferase Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase; PDBTitle: 2.20 angstrom resolution structure of 3-phosphoshikimate 1-2 carboxyvinyltransferase (aroa) from coxiella burnetii 46 d7reqa2 not modelled 27.5 15 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 47 d1vlja_ not modelled 27.4 16 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 48 c2ewtA_ not modelled 26.7 27 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of the dna-binding domain of bldd 49 c2decA_ not modelled 25.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:325aa long hypothetical protein; PDBTitle: crystal structure of the ph0510 protein from pyrococcus horikoshii ot3 50 d1u7pa_ not modelled 25.4 23 Fold:HAD-like Superfamily:HAD-like Family:Magnesium-dependent phosphatase-1, Mdp1 51 c3pdiB_ not modelled 25.1 12 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 52 c1shyB_ not modelled 25.1 10 PDB header:growth factor/growth factor receptor Chain: B: PDB Molecule:hepatocyte growth factor receptor; PDBTitle: the crystal structure of hgf beta-chain in complex with the sema2 domain of the met receptor. 53 c3bfjK_ not modelled 24.1 15 PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase 54 c3t76A_ not modelled 23.8 8 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii 55 c3knzA_ not modelled 23.6 12 PDB header:sugar binding protein Chain: A: PDB Molecule:putative sugar binding protein; PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution 56 c1w2wJ_ not modelled 23.2 19 PDB header:isomerase Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 57 d1m1nb_ not modelled 22.3 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 58 d1wpga2 not modelled 22.0 21 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 59 c3e59A_ not modelled 21.9 19 PDB header:transferase Chain: A: PDB Molecule:pyoverdine biosynthesis protein pvca; PDBTitle: crystal structure of the pvca (pa2254) protein from pseudomonas2 aeruginosa 60 c2infB_ not modelled 21.7 21 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 bacillus subtilis 61 c3ox4D_ not modelled 21.4 13 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 2; PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor 62 c1ri9A_ not modelled 21.1 18 PDB header:signaling protein Chain: A: PDB Molecule:fyn-binding protein; PDBTitle: structure of a helically extended sh3 domain of the t cell2 adapter protein adap 63 d1ri9a_ not modelled 21.1 18 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 64 d1uc8a1 not modelled 20.4 13 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Lysine biosynthesis enzyme LysX, N-terminal domain 65 d1i4na_ not modelled 19.6 14 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 66 c2gq1A_ not modelled 19.4 17 PDB header:hydrolase Chain: A: PDB Molecule:fructose-1,6-bisphosphatase; PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions 67 d1m1na_ not modelled 19.0 22 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 68 c3r38A_ not modelled 18.8 27 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase 1; PDBTitle: 2.23 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase (mura) from listeria monocytogenes egd-e 69 d1v8ba2 not modelled 18.6 19 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:S-adenosylhomocystein hydrolase 70 c3h1qB_ not modelled 18.4 22 PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans 71 c1x1oC_ not modelled 18.4 18 PDB header:transferase Chain: C: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of project id tt0268 from thermus thermophilus hb8 72 c3ht4B_ not modelled 18.1 18 PDB header:lyase Chain: B: PDB Molecule:aluminum resistance protein; PDBTitle: crystal structure of the q81a77_baccr protein from bacillus2 cereus. northeast structural genomics consortium target3 bcr213 73 d1miob_ not modelled 18.0 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 74 c2z01A_ not modelled 17.6 13 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of phosphoribosylaminoimidazole2 synthetase from geobacillus kaustophilus 75 c3dnfB_ not modelled 16.6 28 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 76 d1llib_ not modelled 16.6 28 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 77 c2duwA_ not modelled 16.1 10 PDB header:ligand binding protein Chain: A: PDB Molecule:putative coa-binding protein; PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae 78 c2xdqA_ not modelled 16.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 79 d2ofya1 not modelled 15.7 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 80 d1a8pa2 not modelled 15.6 13 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 81 d1utxa_ not modelled 15.4 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 82 c3bs3A_ not modelled 15.3 32 PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis 83 c3ej6D_ not modelled 15.2 25 PDB header:oxidoreductase Chain: D: PDB Molecule:catalase-3; PDBTitle: neurospora crassa catalase-3 crystal structure 84 c3b7hA_ not modelled 15.2 25 PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11 85 d1d7ya2 not modelled 15.1 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 86 c2jtvA_ not modelled 15.1 17 PDB header:structural genomics Chain: A: PDB Molecule:protein of unknown function; PDBTitle: solution structure of protein rpa3401, northeast structural genomics2 consortium target rpt7, ontario center for structural proteomics3 target rp3384 87 c3al8B_ not modelled 15.0 15 PDB header:signaling protein Chain: B: PDB Molecule:plexin-a2; PDBTitle: plexin a2 / semaphorin 6a complex 88 c3al9B_ not modelled 14.9 15 PDB header:signaling protein Chain: B: PDB Molecule:plexin-a2; PDBTitle: mouse plexin a2 extracellular domain 89 c3fkjA_ not modelled 14.5 15 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerases; PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution 90 d1ejda_ not modelled 14.1 21 Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT 91 c3aerC_ not modelled 13.9 21 PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 92 c3lisB_ not modelled 13.8 27 PDB header:transcription Chain: B: PDB Molecule:csp231i c protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form) 93 d1twia2 not modelled 13.7 14 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 94 d1ccwa_ not modelled 13.2 17 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 95 c3clhA_ not modelled 13.1 19 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori 96 d1mioa_ not modelled 12.9 16 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 97 c3fj1A_ not modelled 12.6 16 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution 98 c3mwdB_ not modelled 12.4 14 PDB header:transferase Chain: B: PDB Molecule:atp-citrate synthase; PDBTitle: truncated human atp-citrate lyase with citrate bound 99 d1jzta_ not modelled 12.4 15 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0