Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AF08
DateThu Jan 5 11:24:49 GMT 2012
Unique Job IDb4c9fd98d9fb5655

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2afhe1
Top template information
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
Confidence and coverage
Confidence:100.0% Coverage: 67%
246 residues ( 67% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
322 residues ( 87%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAWMDDTLHVELVMPFVWH
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Disorder  ?????????




































?












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   .........70.........80.........90.........100.........110.........120
Sequence  SAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPGINGVKNIIAVSSGKGGVG
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????????????????????












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   .........130.........140.........150.........160.........170.........180
Sequence  KSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGTHMAPIMSHGLAT
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   .........190.........200.........210.........220.........230.........240
Sequence  NSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPV
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Disorder 



?

?????????????





































??
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   .........250.........260.........270.........280.........290.........300
Sequence  TGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSVHICSNCGHHEPIFGTGGAEK
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???????
????
?


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   .........310.........320.........330.........340.........350.........360
Sequence  LAEKYHTQLLGQMPLHISLREDLDKGTPTVISRPESEFTAIYRQLADRVAAQLYWQGEVI
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?
??????
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   .........
Sequence  PGEISFRAV
Secondary structure 





SS confidence 








Disorder  ?????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2afh chain E domain 1

3D model

Region: 108 - 369
Aligned: 246
Modelled: 262
Confidence: 100.0%
Identity: 22%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 2ph1 chain A

3D model

Region: 104 - 328
Aligned: 225
Modelled: 225
Confidence: 100.0%
Identity: 41%
PDB header:ligand binding protein
Chain: A: PDB Molecule:nucleotide-binding protein;
PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165

Phyre2

PDB 3end chain A

3D model

Region: 106 - 365
Aligned: 239
Modelled: 247
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase
PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein

Phyre2

PDB 1cp2 chain A

3D model

Region: 108 - 369
Aligned: 246
Modelled: 262
Confidence: 100.0%
Identity: 21%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1ion chain A

3D model

Region: 106 - 358
Aligned: 241
Modelled: 242
Confidence: 100.0%
Identity: 23%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1g3q chain A

3D model

Region: 107 - 351
Aligned: 233
Modelled: 235
Confidence: 100.0%
Identity: 25%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 3q9l chain B

3D model

Region: 107 - 352
Aligned: 237
Modelled: 246
Confidence: 100.0%
Identity: 19%
PDB header:cell cycle, hydrolase
Chain: B: PDB Molecule:septum site-determining protein mind;
PDBTitle: the structure of the dimeric e.coli mind-atp complex

Phyre2

PDB 1hyq chain A

3D model

Region: 108 - 350
Aligned: 231
Modelled: 243
Confidence: 100.0%
Identity: 24%
PDB header:cell cycle
Chain: A: PDB Molecule:cell division inhibitor (mind-1);
PDBTitle: mind bacterial cell division regulator from a. fulgidus

Phyre2

PDB 1hyq chain A

3D model

Region: 108 - 350
Aligned: 231
Modelled: 243
Confidence: 100.0%
Identity: 24%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 3ea0 chain B

3D model

Region: 104 - 349
Aligned: 232
Modelled: 234
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:atpase, para family;
PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls

Phyre2

PDB 3kjg chain B

3D model

Region: 110 - 353
Aligned: 222
Modelled: 229
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1

Phyre2

PDB 2bek chain B

3D model

Region: 108 - 353
Aligned: 233
Modelled: 244
Confidence: 100.0%
Identity: 24%
PDB header:chromosome segregation
Chain: B: PDB Molecule:segregation protein;
PDBTitle: structure of the bacterial chromosome segregation protein2 soj

Phyre2

PDB 2oze chain A

3D model

Region: 104 - 353
Aligned: 241
Modelled: 250
Confidence: 100.0%
Identity: 12%
PDB header:dna binding protein
Chain: A: PDB Molecule:orf delta';
PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes

Phyre2

PDB 3ez6 chain B

3D model

Region: 92 - 353
Aligned: 252
Modelled: 262
Confidence: 100.0%
Identity: 17%
PDB header:dna binding protein
Chain: B: PDB Molecule:plasmid partition protein a;
PDBTitle: structure of para-adp complex:tetragonal form

Phyre2

PDB 2xj9 chain B

3D model

Region: 107 - 349
Aligned: 228
Modelled: 243
Confidence: 100.0%
Identity: 18%
PDB header:replication
Chain: B: PDB Molecule:mipz;
PDBTitle: dimer structure of the bacterial cell division regulator mipz

Phyre2

PDB 3fkq chain A

3D model

Region: 95 - 327
Aligned: 215
Modelled: 215
Confidence: 100.0%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntrc-like two-domain protein;
PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution

Phyre2

PDB 3zq6 chain D

3D model

Region: 98 - 317
Aligned: 219
Modelled: 220
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: D: PDB Molecule:putative arsenical pump-driving atpase;
PDBTitle: adp-alf4 complex of m. therm. trc40

Phyre2

PDB 3cwq chain B

3D model

Region: 109 - 354
Aligned: 192
Modelled: 207
Confidence: 100.0%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:para family chromosome partitioning protein;
PDBTitle: crystal structure of chromosome partitioning protein (para) in complex2 with adp from synechocystis sp. northeast structural genomics3 consortium target sgr89

Phyre2

PDB 2woo chain C

3D model

Region: 108 - 351
Aligned: 225
Modelled: 228
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: C: PDB Molecule:atpase get3;
PDBTitle: nucleotide-free form of s. pombe get3

Phyre2

PDB 3ug7 chain D

3D model

Region: 107 - 349
Aligned: 224
Modelled: 227
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: D: PDB Molecule:arsenical pump-driving atpase;
PDBTitle: crystal structure of get3 from methanocaldococcus jannaschii

Phyre2

PDB 3la6 chain P

3D model

Region: 67 - 285
Aligned: 218
Modelled: 218
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: P: PDB Molecule:tyrosine-protein kinase wzc;
PDBTitle: octameric kinase domain of the e. coli tyrosine kinase wzc with bound2 adp

Phyre2

PDB 3lno chain A

3D model

Region: 6 - 100
Aligned: 95
Modelled: 88
Confidence: 99.7%
Identity: 14%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis

Phyre2

PDB 2cu6 chain A domain 1

3D model

Region: 13 - 102
Aligned: 90
Modelled: 89
Confidence: 99.6%
Identity: 13%
Fold: Alpha-lytic protease prodomain-like
Superfamily: Fe-S cluster assembly (FSCA) domain-like
Family: PaaD-like

Phyre2

PDB 1uwd chain A

3D model

Region: 14 - 100
Aligned: 87
Modelled: 87
Confidence: 99.6%
Identity: 13%
Fold: Alpha-lytic protease prodomain-like
Superfamily: Fe-S cluster assembly (FSCA) domain-like
Family: PaaD-like

Phyre2
1

d2afhe1
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c2ph1A_
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c3endA_
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d1cp2a_
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d1iona_
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d1g3qa_
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c3q9lB_
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c1hyqA_
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d1hyqa_
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c3ea0B_
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c3kjgB_
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c2bekB_
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c2ozeA_
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c3ez6B_
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c2xj9B_
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c3fkqA_
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c3zq6D_
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c3cwqB_
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c2wooC_
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c3ug7D_
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c3la6P_
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c3lnoA_
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d2cu6a1
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d1uwda_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2afhe1



100.0 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
2c2ph1A_



100.0 41 PDB header:ligand binding protein
Chain: A: PDB Molecule:nucleotide-binding protein;
PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165
3c3endA_



100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase
PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein
4d1cp2a_



100.0 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
5d1iona_



100.0 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
6d1g3qa_



100.0 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
7c3q9lB_



100.0 19 PDB header:cell cycle, hydrolase
Chain: B: PDB Molecule:septum site-determining protein mind;
PDBTitle: the structure of the dimeric e.coli mind-atp complex
8c1hyqA_



100.0 24 PDB header:cell cycle
Chain: A: PDB Molecule:cell division inhibitor (mind-1);
PDBTitle: mind bacterial cell division regulator from a. fulgidus
9d1hyqa_



100.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
10c3ea0B_



100.0 17 PDB header:hydrolase
Chain: B: PDB Molecule:atpase, para family;
PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls
11c3kjgB_



100.0 17 PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1
12c2bekB_



100.0 24 PDB header:chromosome segregation
Chain: B: PDB Molecule:segregation protein;
PDBTitle: structure of the bacterial chromosome segregation protein2 soj
13c2ozeA_



100.0 12 PDB header:dna binding protein
Chain: A: PDB Molecule:orf delta';
PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes
14c3ez6B_



100.0 17 PDB header:dna binding protein
Chain: B: PDB Molecule:plasmid partition protein a;
PDBTitle: structure of para-adp complex:tetragonal form
15c2xj9B_



100.0 18 PDB header:replication
Chain: B: PDB Molecule:mipz;
PDBTitle: dimer structure of the bacterial cell division regulator mipz
16c3fkqA_



100.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntrc-like two-domain protein;
PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution
17c3zq6D_



100.0 21 PDB header:hydrolase
Chain: D: PDB Molecule:putative arsenical pump-driving atpase;
PDBTitle: adp-alf4 complex of m. therm. trc40
18c3cwqB_



100.0 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:para family chromosome partitioning protein;
PDBTitle: crystal structure of chromosome partitioning protein (para) in complex2 with adp from synechocystis sp. northeast structural genomics3 consortium target sgr89
19c2wooC_



100.0 21 PDB header:hydrolase
Chain: C: PDB Molecule:atpase get3;
PDBTitle: nucleotide-free form of s. pombe get3
20c3ug7D_



100.0 22 PDB header:hydrolase
Chain: D: PDB Molecule:arsenical pump-driving atpase;
PDBTitle: crystal structure of get3 from methanocaldococcus jannaschii
21c3k9gA_



not modelled 100.0 17 PDB header:biosynthetic protein
Chain: A: PDB Molecule:pf-32 protein;
PDBTitle: crystal structure of a plasmid partition protein from borrelia2 burgdorferi at 2.25a resolution, iodide soak
22c1ii0A_



not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:arsenical pump-driving atpase;
PDBTitle: crystal structure of the escherichia coli arsenite-translocating2 atpase
23c3ezfA_



not modelled 100.0 14 PDB header:biosynthetic protein
Chain: A: PDB Molecule:para;
PDBTitle: partition protein
24c3pg5A_



not modelled 100.0 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein dip2308 from corynebacterium diphtheriae,2 northeast structural genomics consortium target cdr78
25c2wojD_



not modelled 100.0 18 PDB header:hydrolase
Chain: D: PDB Molecule:atpase get3;
PDBTitle: adp-alf4 complex of s. cerevisiae get3
26c3ibgF_



not modelled 100.0 24 PDB header:hydrolase
Chain: F: PDB Molecule:atpase, subunit of the get complex;
PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp
27c3cioA_



not modelled 100.0 16 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:tyrosine-protein kinase etk;
PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk
28d1byia_



not modelled 100.0 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
29c3la6P_



100.0 15 PDB header:transferase
Chain: P: PDB Molecule:tyrosine-protein kinase wzc;
PDBTitle: octameric kinase domain of the e. coli tyrosine kinase wzc with bound2 adp
30c3of5A_



not modelled 100.0 12 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of a dethiobiotin synthetase from francisella2 tularensis subsp. tularensis schu s4
31d1ihua2



not modelled 100.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
32c2vedA_



not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:membrane protein capa1, protein tyrosine kinase;
PDBTitle: crystal structure of the chimerical mutant capabk55m2 protein
33c3io3A_



not modelled 100.0 18 PDB header:chaperone
Chain: A: PDB Molecule:deha2d07832p;
PDBTitle: get3 with adp from d. hansenii in closed form
34d1ihua1



not modelled 100.0 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
35c3igfB_



not modelled 100.0 18 PDB header:atp binding protein
Chain: B: PDB Molecule:all4481 protein;
PDBTitle: crystal structure of the all4481 protein from nostoc sp. pcc 7120,2 northeast structural genomics consortium target nsr300
36c2qmoA_



not modelled 99.9 9 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of dethiobiotin synthetase (biod) from helicobacter2 pylori
37c3fmfA_



not modelled 99.9 15 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate
38c3lnoA_



99.7 14 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis
39d2cu6a1



99.6 13 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
40d1uwda_



99.6 13 Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
41c1zu4A_



not modelled 99.6 15 PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
42c2qy9A_



not modelled 99.5 16 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
43c1vmaA_



not modelled 99.5 17 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
44c3dm5A_



not modelled 99.5 15 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
45c2iy3A_



not modelled 99.4 18 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
46c2cnwF_



not modelled 99.4 17 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
47c2og2A_



not modelled 99.4 16 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
48c2j37W_



not modelled 99.4 17 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
49c2j7pA_



not modelled 99.4 17 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
50c3b9qA_



not modelled 99.4 17 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
51c2v3cC_



not modelled 99.3 21 PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
52c2yhsA_



not modelled 99.3 18 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
53c1qzwC_



not modelled 99.3 17 PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
54c2j289_



not modelled 99.1 18 PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
55c3dmdA_



not modelled 99.1 17 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
56d1vmaa2



not modelled 98.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
57d1qzxa3



not modelled 98.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
58d1j8yf2



not modelled 98.4 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
59c1j8yF_



not modelled 98.3 17 PDB header:signaling protein
Chain: F: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant
60c2px0D_



not modelled 98.3 14 PDB header:biosynthetic protein
Chain: D: PDB Molecule:flagellar biosynthesis protein flhf;
PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
61d1okkd2



not modelled 98.2 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
62d1ls1a2



not modelled 98.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
63d2qy9a2



not modelled 98.0 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
64c2npiB_



not modelled 98.0 16 PDB header:transcription
Chain: B: PDB Molecule:protein clp1;
PDBTitle: clp1-atp-pcf11 complex
65c2h5eB_



not modelled 97.8 18 PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor rf-3;
PDBTitle: crystal structure of e.coli polypeptide release factor rf3
66d2qm8a1



not modelled 97.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
67c2recB_



not modelled 97.6 24 PDB header:helicase
PDB COMPND:
68d1x6va3



not modelled 97.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Adenosine-5'phosphosulfate kinase (APS kinase)
69c1xp8A_



not modelled 97.4 24 PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
70c2ywfA_



not modelled 97.3 15 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
71d1mo6a1



not modelled 97.3 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
72c2zroA_



not modelled 97.2 23 PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
73c1xnjB_



not modelled 97.2 21 PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: aps complex of human paps synthetase 1
74c2f1rA_



not modelled 97.2 19 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
75c3hr8A_



not modelled 97.2 19 PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca
76c1zunB_



not modelled 97.1 13 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylate transferase, subunit
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
77d1n0ua2



not modelled 97.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
78c3b8hA_



not modelled 97.1 16 PDB header:biosynthetic protein/transferase
Chain: A: PDB Molecule:elongation factor 2;
PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
79d1nija1



not modelled 97.1 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
80d1xjca_



not modelled 97.1 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
81c3bgwD_



not modelled 97.0 14 PDB header:replication
Chain: D: PDB Molecule:dnab-like replicative helicase;
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
82d1u94a1



not modelled 96.9 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
83c2q6tB_



not modelled 96.8 28 PDB header:hydrolase
Chain: B: PDB Molecule:dnab replication fork helicase;
PDBTitle: crystal structure of the thermus aquaticus dnab monomer
84c3tr5C_



not modelled 96.8 13 PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
85d1np6a_



not modelled 96.8 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
86d1nlfa_



not modelled 96.8 33 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
87c2gksB_



not modelled 96.8 34 PDB header:transferase
Chain: B: PDB Molecule:bifunctional sat/aps kinase;
PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
88d1ubea1



not modelled 96.7 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
89c1d2eA_



not modelled 96.7 15 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
90c2vyeA_



not modelled 96.7 25 PDB header:hydrolase
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex
91c3cr8C_



not modelled 96.7 33 PDB header:transferase
Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate
PDBTitle: hexameric aps kinase from thiobacillus denitrificans
92c3bh0A_



not modelled 96.6 14 PDB header:replication
Chain: A: PDB Molecule:dnab-like replicative helicase;
PDBTitle: atpase domain of g40p
93d1xp8a1



not modelled 96.6 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
94d1rz3a_



not modelled 96.5 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
95c2dy1A_



not modelled 96.5 13 PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus
96c2ztsB_



not modelled 96.5 19 PDB header:atp-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein ph0186;
PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
97c2w0mA_



not modelled 96.5 14 PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
98c1zn0B_



not modelled 96.5 16 PDB header:translation/biosynthetic protein/rna
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf
99c2xexA_



not modelled 96.4 15 PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
100c2dr3A_



not modelled 96.4 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0273 protein ph0284;
PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
101c3do6B_



not modelled 96.4 29 PDB header:ligase
Chain: B: PDB Molecule:formate--tetrahydrofolate ligase;
PDBTitle: crystal structure of putative formyltetrahydrofolate2 synthetase (tm1766) from thermotoga maritima at 1.85 a3 resolution
102d1tf7a2



not modelled 96.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
103c3c8uA_



not modelled 96.3 30 PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
104d2p67a1



not modelled 96.3 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
105d1eg7a_



not modelled 96.3 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
106d1knqa_



not modelled 96.3 34 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Gluconate kinase
107c2i1vB_



not modelled 96.3 17 PDB header:transferase, hydrolase
Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6-
PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate
108d1g64b_



not modelled 96.2 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
109c3tqcB_



not modelled 96.2 30 PDB header:transferase
Chain: B: PDB Molecule:pantothenate kinase;
PDBTitle: structure of the pantothenate kinase (coaa) from coxiella burnetii
110d1yrba1



not modelled 96.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
111c2bm0A_



not modelled 96.1 16 PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
112d1sq5a_



not modelled 96.1 32 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
113d1ki9a_



not modelled 96.0 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
114c2gesA_



not modelled 95.9 39 PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase;
PDBTitle: pantothenate kinase from mycobacterium tuberculosis (mtpank) in2 complex with a coenzyme a derivative, form-i (rt)
115c3cb4D_



not modelled 95.9 11 PDB header:translation
Chain: D: PDB Molecule:gtp-binding protein lepa;
PDBTitle: the crystal structure of lepa
116c2wwwB_



not modelled 95.9 22 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
117c3cmvG_



not modelled 95.9 25 PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
118d1odfa_



not modelled 95.9 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
119c1fnnB_



not modelled 95.9 17 PDB header:cell cycle
Chain: B: PDB Molecule:cell division control protein 6;
PDBTitle: crystal structure of cdc6p from pyrobaculum aerophilum
120d1k6ma1



not modelled 95.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0